Miyakogusa Predicted Gene

Lj1g3v4955430.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4955430.1 tr|B9I614|B9I614_POPTR Predicted protein
(Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_241858
PE=4,38.46,0.00000000000001,DS_RBD,Double-stranded RNA-binding;
seg,NULL; Double-stranded RNA binding motif,Double-stranded
RNA-,CUFF.33717.1
         (528 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G26932.2 | Symbols: DRB3 | dsRNA-binding protein 3 | chr3:993...   264   1e-70
AT3G26932.1 | Symbols: DRB3 | dsRNA-binding protein 3 | chr3:993...   264   1e-70
AT5G41070.1 | Symbols: DRB5 | dsRNA-binding protein 5 | chr5:164...   257   1e-68
AT2G28380.1 | Symbols: DRB2 | dsRNA-binding protein 2 | chr2:121...   242   6e-64
AT3G62800.2 | Symbols: DRB4 | double-stranded-RNA-binding protei...   114   1e-25
AT3G62800.1 | Symbols: DRB4 | double-stranded-RNA-binding protei...   114   1e-25
AT3G62800.3 | Symbols:  | double-stranded-RNA-binding protein 4 ...   114   2e-25
AT1G09700.1 | Symbols: HYL1, DRB1 | dsRNA-binding domain-like su...    92   6e-19

>AT3G26932.2 | Symbols: DRB3 | dsRNA-binding protein 3 |
           chr3:9930460-9931714 REVERSE LENGTH=359
          Length = 359

 Score =  264 bits (674), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 122/186 (65%), Positives = 148/186 (79%), Gaps = 5/186 (2%)

Query: 1   MYKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGEAFESPTFCSTLRQAEHAA 60
           MYKN+LQELAQRSCF+LP+Y+C REGPDHAPRFKA+VNFNGE FESPT+CSTLRQAEH+A
Sbjct: 1   MYKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60

Query: 61  AEVALNTFAERGPSRALAARVLDETGVYKNLLQETAHRAGLNLPVYTTIRSGPGHVPNYS 120
           AEVAL+  + +GPS++L ARVLDETG+YKNLLQETAHRAGL+LPVYT++RSGPGH+P +S
Sbjct: 61  AEVALSALSSKGPSKSLTARVLDETGIYKNLLQETAHRAGLDLPVYTSVRSGPGHIPTFS 120

Query: 121 CTVEIAGMHFTGDPARTXXXXXXXXXXXXXXXLRKLPRLHLSSSESKGNEEQEQVIIARV 180
           CTVE+AGM F G+ A+T               LRK+PRL     +    EE+EQ I+ARV
Sbjct: 121 CTVELAGMSFNGESAKTKKQAEKNAAIAAWFSLRKMPRL-----DPLRGEEKEQEIVARV 175

Query: 181 LASLHP 186
           L+   P
Sbjct: 176 LSRFRP 181


>AT3G26932.1 | Symbols: DRB3 | dsRNA-binding protein 3 |
           chr3:9930460-9931714 REVERSE LENGTH=359
          Length = 359

 Score =  264 bits (674), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 122/186 (65%), Positives = 148/186 (79%), Gaps = 5/186 (2%)

Query: 1   MYKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGEAFESPTFCSTLRQAEHAA 60
           MYKN+LQELAQRSCF+LP+Y+C REGPDHAPRFKA+VNFNGE FESPT+CSTLRQAEH+A
Sbjct: 1   MYKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60

Query: 61  AEVALNTFAERGPSRALAARVLDETGVYKNLLQETAHRAGLNLPVYTTIRSGPGHVPNYS 120
           AEVAL+  + +GPS++L ARVLDETG+YKNLLQETAHRAGL+LPVYT++RSGPGH+P +S
Sbjct: 61  AEVALSALSSKGPSKSLTARVLDETGIYKNLLQETAHRAGLDLPVYTSVRSGPGHIPTFS 120

Query: 121 CTVEIAGMHFTGDPARTXXXXXXXXXXXXXXXLRKLPRLHLSSSESKGNEEQEQVIIARV 180
           CTVE+AGM F G+ A+T               LRK+PRL     +    EE+EQ I+ARV
Sbjct: 121 CTVELAGMSFNGESAKTKKQAEKNAAIAAWFSLRKMPRL-----DPLRGEEKEQEIVARV 175

Query: 181 LASLHP 186
           L+   P
Sbjct: 176 LSRFRP 181


>AT5G41070.1 | Symbols: DRB5 | dsRNA-binding protein 5 |
           chr5:16438547-16439916 FORWARD LENGTH=393
          Length = 393

 Score =  257 bits (657), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 118/186 (63%), Positives = 144/186 (77%), Gaps = 6/186 (3%)

Query: 1   MYKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGEAFESPTFCSTLRQAEHAA 60
           MYKN+LQELAQRSCFNLP+Y+CIREGPDHAPRFKA+VNFNGE FESPT+CSTLRQAEHAA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAA 60

Query: 61  AEVALNTFAERGPSRALAARVLDETGVYKNLLQETAHRAGLNLPVYTTIRSGPGHVPNYS 120
           AEV+LN  + R PS++L A++LDETG+YKNLLQETAHRAGL+LP+YT++RSG  H P +S
Sbjct: 61  AEVSLNVLSSRVPSKSLTAKILDETGIYKNLLQETAHRAGLDLPMYTSVRSGSCHFPGFS 120

Query: 121 CTVEIAGMHFTGDPARTXXXXXXXXXXXXXXXLRKLPRLHLSSSESKGNEEQEQVIIARV 180
           CTVE+AGM FTG+ A+T               L+K+      SS    +EE+EQ  +ARV
Sbjct: 121 CTVELAGMTFTGESAKTKKQAEKNAAIAAWSSLKKM------SSLDSQDEEKEQEAVARV 174

Query: 181 LASLHP 186
           L+   P
Sbjct: 175 LSRFKP 180


>AT2G28380.1 | Symbols: DRB2 | dsRNA-binding protein 2 |
           chr2:12134098-12135915 REVERSE LENGTH=434
          Length = 434

 Score =  242 bits (617), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 119/182 (65%), Positives = 137/182 (75%), Gaps = 1/182 (0%)

Query: 1   MYKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGEAFESPTFCSTLRQAEHAA 60
           MYKN+LQELAQRSCFNLP+Y+CIREGPDHAPRFKATVNFNGE FESP +CSTLRQAEH+A
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSA 60

Query: 61  AEVALNTFAERGPSRALAARVLDETGVYKNLLQETAHRAGLNLPVYTTIRSGPGHVPNYS 120
           AEVALN  + RGPS +LAAR+LDETGVYKNLLQE A R G  LP YTT RSG GH P ++
Sbjct: 61  AEVALNALSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPRYTTFRSGLGHQPVFT 120

Query: 121 CTVEIAGMHFTGDPARTXXXXXXXXXXXXXXXLRKLPRLHLSSS-ESKGNEEQEQVIIAR 179
            TVE+AG+ FTGDPA+                L++L +   SS  E +  +E EQVIIAR
Sbjct: 121 GTVELAGITFTGDPAKNKKQAEKNAAMAAWSSLKQLAKETSSSMPEPENIDELEQVIIAR 180

Query: 180 VL 181
            L
Sbjct: 181 AL 182


>AT3G62800.2 | Symbols: DRB4 | double-stranded-RNA-binding protein 4
           | chr3:23225749-23227163 REVERSE LENGTH=355
          Length = 355

 Score =  114 bits (286), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 60/137 (43%), Positives = 79/137 (57%), Gaps = 8/137 (5%)

Query: 1   MYKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGEAFESPTFCSTLRQAEHAA 60
           +YK +LQ  A +    LP Y+  REGP HAPRF+  V F G+ F+S  F  TL+ AEHAA
Sbjct: 4   VYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAA 63

Query: 61  AEVALNTFAERGPSRALAARVLDETGVYKNLLQETAHRAGLNLPVYTTIRSGPGHVPNYS 120
           A++A+ +   + P     A        YKNLLQE A +    LP Y T  SGP H P ++
Sbjct: 64  AKIAVASLTPQSPEGIDVA--------YKNLLQEIAQKESSLLPFYATATSGPSHAPTFT 115

Query: 121 CTVEIAGMHFTGDPART 137
            TVE AG  F+G+ A+T
Sbjct: 116 STVEFAGKVFSGEEAKT 132


>AT3G62800.1 | Symbols: DRB4 | double-stranded-RNA-binding protein 4
           | chr3:23225749-23227163 REVERSE LENGTH=355
          Length = 355

 Score =  114 bits (286), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 60/137 (43%), Positives = 79/137 (57%), Gaps = 8/137 (5%)

Query: 1   MYKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGEAFESPTFCSTLRQAEHAA 60
           +YK +LQ  A +    LP Y+  REGP HAPRF+  V F G+ F+S  F  TL+ AEHAA
Sbjct: 4   VYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAA 63

Query: 61  AEVALNTFAERGPSRALAARVLDETGVYKNLLQETAHRAGLNLPVYTTIRSGPGHVPNYS 120
           A++A+ +   + P     A        YKNLLQE A +    LP Y T  SGP H P ++
Sbjct: 64  AKIAVASLTPQSPEGIDVA--------YKNLLQEIAQKESSLLPFYATATSGPSHAPTFT 115

Query: 121 CTVEIAGMHFTGDPART 137
            TVE AG  F+G+ A+T
Sbjct: 116 STVEFAGKVFSGEEAKT 132


>AT3G62800.3 | Symbols:  | double-stranded-RNA-binding protein 4 |
           chr3:23225749-23227163 REVERSE LENGTH=329
          Length = 329

 Score =  114 bits (285), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 60/137 (43%), Positives = 79/137 (57%), Gaps = 8/137 (5%)

Query: 1   MYKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGEAFESPTFCSTLRQAEHAA 60
           +YK +LQ  A +    LP Y+  REGP HAPRF+  V F G+ F+S  F  TL+ AEHAA
Sbjct: 4   VYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAA 63

Query: 61  AEVALNTFAERGPSRALAARVLDETGVYKNLLQETAHRAGLNLPVYTTIRSGPGHVPNYS 120
           A++A+ +   + P     A        YKNLLQE A +    LP Y T  SGP H P ++
Sbjct: 64  AKIAVASLTPQSPEGIDVA--------YKNLLQEIAQKESSLLPFYATATSGPSHAPTFT 115

Query: 121 CTVEIAGMHFTGDPART 137
            TVE AG  F+G+ A+T
Sbjct: 116 STVEFAGKVFSGEEAKT 132


>AT1G09700.1 | Symbols: HYL1, DRB1 | dsRNA-binding domain-like
           superfamily protein | chr1:3137960-3140118 REVERSE
           LENGTH=419
          Length = 419

 Score = 92.4 bits (228), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 53/139 (38%), Positives = 79/139 (56%), Gaps = 3/139 (2%)

Query: 1   MYKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGEAFES-PTFCSTLRQAEHA 59
           ++K+RLQE AQ+     P Y  ++EGP H   F++TV  +G  + S P F +  + AE +
Sbjct: 15  VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNR-KAAEQS 73

Query: 60  AAEVALNTFAERGPSRALAARVLDETGVYKNLLQETAHRAGLNLPVYTTIR-SGPGHVPN 118
           AAEVAL   A+        ++ + ETG+ KNLLQE A +    +P+Y   +    G V  
Sbjct: 74  AAEVALRELAKSSELSQCVSQPVHETGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQ 133

Query: 119 YSCTVEIAGMHFTGDPART 137
           ++CTVEI G+ +TG   RT
Sbjct: 134 FTCTVEIGGIKYTGAATRT 152