Miyakogusa Predicted Gene

Lj1g3v4955410.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4955410.2 Non Chatacterized Hit- tr|Q01BE3|Q01BE3_OSTTA
Putative HASTY (ISS) (Fragment) OS=Ostreococcus tauri
,41.46,8e-17,seg,NULL; EXPORTIN 5,NULL; EXPORTIN 1/5,NULL; no
description,Armadillo-like helical; Xpo1,Exportin-1,CUFF.33716.2
         (308 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G05040.1 | Symbols: HST, HST1 | ARM repeat superfamily protei...   327   9e-90

>AT3G05040.1 | Symbols: HST, HST1 | ARM repeat superfamily protein |
           chr3:1401479-1408095 REVERSE LENGTH=1202
          Length = 1202

 Score =  327 bits (837), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 166/304 (54%), Positives = 206/304 (67%), Gaps = 2/304 (0%)

Query: 1   MDDTHT--NNVAQAIATALDWASTPSARQSAAAFLDSIKAGDVRVLANTSFLLVKKNWSP 58
           M+D+++  +NVA+AI   +D++ST   R+SA  FLDS+K+GDVRVLA TSF LVKK WS 
Sbjct: 1   MEDSNSTASNVARAILAVVDFSSTSDTRKSAVQFLDSVKSGDVRVLAKTSFHLVKKEWSS 60

Query: 59  EIRLHAFKMLQHLVRLRWEELSPAEHRNFANLSVDLMSEIADPGENWALKSQTAALVAEI 118
           EIRLHAFKMLQHLVRLRW+ELSP E R   NLS++LMSE+A+  ENW LKSQ+AALVAEI
Sbjct: 61  EIRLHAFKMLQHLVRLRWDELSPPECRGLVNLSIELMSEVANASENWPLKSQSAALVAEI 120

Query: 119 VRSEGLNLWQEMLPSLVSLSDKGPIQAELVSMMLRWLPEDITVHNEXXXXXXXXXXXXXX 178
           VR EG + WQE+   L SLS +GP+QAELV M LRWLPEDIT++N+              
Sbjct: 121 VRREGPDRWQEIFTLLTSLSAQGPLQAELVLMTLRWLPEDITIYNDDLEGDRRRLLLRGL 180

Query: 179 XXXXXXXXXXXXXXXXRHFTAALNEAGRKQMDIAKLHXXXXXXXXXXXXXXXEWAPLSDL 238
                           RHF AA++EAG +  D+AK H               EWAP+ DL
Sbjct: 181 TQSLPEILPLLYNLLERHFGAAMSEAGMQHFDLAKQHADVVIACLNAIVAYTEWAPVPDL 240

Query: 239 AKSGIIHGCAFLLSAPDFRLHASEFFKLVSPRKRPADPSASEFDQAMRSIFQTLMNISRD 298
           A+ GI+ GC+FLLS+ DFRLHA E FKLV  RKRP+D S +EFD A+ ++FQ L N SR+
Sbjct: 241 ARYGILSGCSFLLSSSDFRLHACEVFKLVCSRKRPSDASTAEFDSAISNLFQILTNASRE 300

Query: 299 FLYR 302
           FL R
Sbjct: 301 FLCR 304