Miyakogusa Predicted Gene

Lj1g3v4955350.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4955350.1 tr|Q56VR6|Q56VR6_LOTJA Superoxide dismutase
[Cu-Zn] OS=Lotus japonicus GN=sodCc PE=2 SV=1,100,0,Cu,Zn superoxide
dismutase-like,Superoxide dismutase, copper/zinc binding domain; no
description,Sup,CUFF.33903.1
         (152 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G08830.2 | Symbols: CSD1 | copper/zinc superoxide dismutase 1...   257   2e-69
AT1G08830.1 | Symbols: CSD1 | copper/zinc superoxide dismutase 1...   257   2e-69
AT2G28190.1 | Symbols: CSD2, CZSOD2 | copper/zinc superoxide dis...   201   1e-52
AT5G18100.1 | Symbols: CSD3 | copper/zinc superoxide dismutase 3...   199   8e-52
AT5G18100.2 | Symbols: CSD3 | copper/zinc superoxide dismutase 3...   161   2e-40
AT1G12520.2 | Symbols: ATCCS, CCS | copper chaperone for SOD1 | ...    56   1e-08
AT1G12520.3 | Symbols: ATCCS, CCS | copper chaperone for SOD1 | ...    56   1e-08
AT1G12520.1 | Symbols: ATCCS, CCS | copper chaperone for SOD1 | ...    55   2e-08

>AT1G08830.2 | Symbols: CSD1 | copper/zinc superoxide dismutase 1 |
           chr1:2827700-2829053 FORWARD LENGTH=152
          Length = 152

 Score =  257 bits (656), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 129/152 (84%), Positives = 137/152 (90%)

Query: 1   MVKAVAVLGSSDNVKGTITFSQEGDGPTNVSGTISGLKPGLHGFHVHALGDTTNGCLSTG 60
           M K VAVL SS+ V GTI F+QEGDG T VSGT+SGLKPGLHGFHVHALGDTTNGC+STG
Sbjct: 1   MAKGVAVLNSSEGVTGTIFFTQEGDGVTTVSGTVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPAGKEHGAPEDAIRHAGDLGNVTVGDDGTTSFSITDSQIPLTGPNSIIGRAVVVHA 120
           PHFNP GK HGAPEDA RHAGDLGN+TVGDDGT +F+ITD QIPLTGPNSI+GRAVVVHA
Sbjct: 61  PHFNPDGKTHGAPEDANRHAGDLGNITVGDDGTATFTITDCQIPLTGPNSIVGRAVVVHA 120

Query: 121 DPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 152
           DPDDLGKGGHELS  TGNAGGRVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSLATGNAGGRVACGIIGLQG 152


>AT1G08830.1 | Symbols: CSD1 | copper/zinc superoxide dismutase 1 |
           chr1:2827700-2829053 FORWARD LENGTH=152
          Length = 152

 Score =  257 bits (656), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 129/152 (84%), Positives = 137/152 (90%)

Query: 1   MVKAVAVLGSSDNVKGTITFSQEGDGPTNVSGTISGLKPGLHGFHVHALGDTTNGCLSTG 60
           M K VAVL SS+ V GTI F+QEGDG T VSGT+SGLKPGLHGFHVHALGDTTNGC+STG
Sbjct: 1   MAKGVAVLNSSEGVTGTIFFTQEGDGVTTVSGTVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPAGKEHGAPEDAIRHAGDLGNVTVGDDGTTSFSITDSQIPLTGPNSIIGRAVVVHA 120
           PHFNP GK HGAPEDA RHAGDLGN+TVGDDGT +F+ITD QIPLTGPNSI+GRAVVVHA
Sbjct: 61  PHFNPDGKTHGAPEDANRHAGDLGNITVGDDGTATFTITDCQIPLTGPNSIVGRAVVVHA 120

Query: 121 DPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 152
           DPDDLGKGGHELS  TGNAGGRVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSLATGNAGGRVACGIIGLQG 152


>AT2G28190.1 | Symbols: CSD2, CZSOD2 | copper/zinc superoxide
           dismutase 2 | chr2:12014548-12016303 FORWARD LENGTH=216
          Length = 216

 Score =  201 bits (512), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 97/148 (65%), Positives = 114/148 (77%)

Query: 3   KAVAVLGSSDNVKGTITFSQEGDGPTNVSGTISGLKPGLHGFHVHALGDTTNGCLSTGPH 62
           KAVAVL  + +V+G +T +Q+  GPT V+  I+GL PG HGFH+H  GDTTNGC+STGPH
Sbjct: 66  KAVAVLKGTSDVEGVVTLTQDDSGPTTVNVRITGLTPGPHGFHLHEFGDTTNGCISTGPH 125

Query: 63  FNPAGKEHGAPEDAIRHAGDLGNVTVGDDGTTSFSITDSQIPLTGPNSIIGRAVVVHADP 122
           FNP    HGAPED  RHAGDLGN+    DG    +I D+QIPLTGPNS++GRA VVH   
Sbjct: 126 FNPNNMTHGAPEDECRHAGDLGNINANADGVAETTIVDNQIPLTGPNSVVGRAFVVHELK 185

Query: 123 DDLGKGGHELSKTTGNAGGRVACGIIGL 150
           DDLGKGGHELS TTGNAGGR+ACG+IGL
Sbjct: 186 DDLGKGGHELSLTTGNAGGRLACGVIGL 213


>AT5G18100.1 | Symbols: CSD3 | copper/zinc superoxide dismutase 3 |
           chr5:5987221-5988706 FORWARD LENGTH=164
          Length = 164

 Score =  199 bits (505), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 94/150 (62%), Positives = 115/150 (76%)

Query: 2   VKAVAVLGSSDNVKGTITFSQEGDGPTNVSGTISGLKPGLHGFHVHALGDTTNGCLSTGP 61
           ++AVA++   +NV+G + F Q+  G T+V+G ISGL PG HGFH+H+ GDTTNGC+STGP
Sbjct: 8   LRAVALIAGDNNVRGCLQFVQDISGTTHVTGKISGLSPGFHGFHIHSFGDTTNGCISTGP 67

Query: 62  HFNPAGKEHGAPEDAIRHAGDLGNVTVGDDGTTSFSITDSQIPLTGPNSIIGRAVVVHAD 121
           HFNP  + HG P +  RHAGDLGN+  G +G     I D  IPL+G  SI+GRAVVVHAD
Sbjct: 68  HFNPLNRVHGPPNEEERHAGDLGNILAGSNGVAEILIKDKHIPLSGQYSILGRAVVVHAD 127

Query: 122 PDDLGKGGHELSKTTGNAGGRVACGIIGLQ 151
           PDDLGKGGH+LSK+TGNAG RV CGIIGLQ
Sbjct: 128 PDDLGKGGHKLSKSTGNAGSRVGCGIIGLQ 157


>AT5G18100.2 | Symbols: CSD3 | copper/zinc superoxide dismutase 3 |
           chr5:5987221-5988436 FORWARD LENGTH=137
          Length = 137

 Score =  161 bits (407), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 75/127 (59%), Positives = 94/127 (74%)

Query: 2   VKAVAVLGSSDNVKGTITFSQEGDGPTNVSGTISGLKPGLHGFHVHALGDTTNGCLSTGP 61
           ++AVA++   +NV+G + F Q+  G T+V+G ISGL PG HGFH+H+ GDTTNGC+STGP
Sbjct: 8   LRAVALIAGDNNVRGCLQFVQDISGTTHVTGKISGLSPGFHGFHIHSFGDTTNGCISTGP 67

Query: 62  HFNPAGKEHGAPEDAIRHAGDLGNVTVGDDGTTSFSITDSQIPLTGPNSIIGRAVVVHAD 121
           HFNP  + HG P +  RHAGDLGN+  G +G     I D  IPL+G  SI+GRAVVVHAD
Sbjct: 68  HFNPLNRVHGPPNEEERHAGDLGNILAGSNGVAEILIKDKHIPLSGQYSILGRAVVVHAD 127

Query: 122 PDDLGKG 128
           PDDLGKG
Sbjct: 128 PDDLGKG 134


>AT1G12520.2 | Symbols: ATCCS, CCS | copper chaperone for SOD1 |
           chr1:4267277-4268438 REVERSE LENGTH=229
          Length = 229

 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 8/112 (7%)

Query: 13  NVKGTITFSQEGDGPTNVSGTISGLKPGLHGFHVHALGDTTNGCLSTGPHFNPAGKEHGA 72
           ++ G + F+Q       +    +GL PG H + ++  GD TNG  STG  +NP   + G 
Sbjct: 81  DIFGVVRFAQVSMELARIEANFTGLSPGTHSWCINEYGDLTNGAASTGSLYNPFQDQTGT 140

Query: 73  PEDAIRHAGDLGNVTVGDDGTTSFSITDSQIPLTGPNSIIGRAVVVHADPDD 124
                   GDLG +    +G   +S    ++ +     +IGRAVVV+   D+
Sbjct: 141 -----EPLGDLGTLEADKNGEAFYSGKKEKLKVA---DLIGRAVVVYKTDDN 184


>AT1G12520.3 | Symbols: ATCCS, CCS | copper chaperone for SOD1 |
           chr1:4267277-4268206 REVERSE LENGTH=184
          Length = 184

 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 8/112 (7%)

Query: 13  NVKGTITFSQEGDGPTNVSGTISGLKPGLHGFHVHALGDTTNGCLSTGPHFNPAGKEHGA 72
           ++ G + F+Q       +    +GL PG H + ++  GD TNG  STG  +NP   + G 
Sbjct: 36  DIFGVVRFAQVSMELARIEANFTGLSPGTHSWCINEYGDLTNGAASTGSLYNPFQDQTGT 95

Query: 73  PEDAIRHAGDLGNVTVGDDGTTSFSITDSQIPLTGPNSIIGRAVVVHADPDD 124
                   GDLG +    +G   +S    ++ +     +IGRAVVV+   D+
Sbjct: 96  -----EPLGDLGTLEADKNGEAFYSGKKEKLKVA---DLIGRAVVVYKTDDN 139


>AT1G12520.1 | Symbols: ATCCS, CCS | copper chaperone for SOD1 |
           chr1:4267277-4268900 REVERSE LENGTH=320
          Length = 320

 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 8/112 (7%)

Query: 13  NVKGTITFSQEGDGPTNVSGTISGLKPGLHGFHVHALGDTTNGCLSTGPHFNPAGKEHGA 72
           ++ G + F+Q       +    +GL PG H + ++  GD TNG  STG  +NP   + G 
Sbjct: 172 DIFGVVRFAQVSMELARIEANFTGLSPGTHSWCINEYGDLTNGAASTGSLYNPFQDQTGT 231

Query: 73  PEDAIRHAGDLGNVTVGDDGTTSFSITDSQIPLTGPNSIIGRAVVVHADPDD 124
                   GDLG +    +G   +S    ++ +     +IGRAVVV+   D+
Sbjct: 232 -----EPLGDLGTLEADKNGEAFYSGKKEKLKVA---DLIGRAVVVYKTDDN 275