Miyakogusa Predicted Gene

Lj1g3v4931740.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4931740.1 Non Chatacterized Hit- tr|B8LNX3|B8LNX3_PICSI
Putative uncharacterized protein OS=Picea sitchensis
P,48.96,5e-19,Yip1,Yip1 domain; UNCHARACTERIZED,NULL,CUFF.34043.1
         (126 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G27490.1 | Symbols:  | Integral membrane Yip1 family protein ...   172   4e-44
AT3G05280.1 | Symbols:  | Integral membrane Yip1 family protein ...   169   4e-43
AT2G39805.1 | Symbols:  | Integral membrane Yip1 family protein ...    89   5e-19
AT2G39805.2 | Symbols:  | Integral membrane Yip1 family protein ...    89   6e-19

>AT5G27490.1 | Symbols:  | Integral membrane Yip1 family protein |
           chr5:9703130-9704653 REVERSE LENGTH=282
          Length = 282

 Score =  172 bits (437), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 83/102 (81%), Positives = 91/102 (89%), Gaps = 3/102 (2%)

Query: 16  NVRRYGPFWICTTLIFVAASIGTFVTYLAHKLKDKEWNYDINLVTWSAGLFYGYVTVVPL 75
           N   YGPFWICTTLIFVAASIGTFVTY+AHKLK +EWNYDINLVTWSAG+FYGYVT+VPL
Sbjct: 122 NPDLYGPFWICTTLIFVAASIGTFVTYIAHKLKKQEWNYDINLVTWSAGVFYGYVTIVPL 181

Query: 76  CLYVILKYFSAPASLVQLFCLYGYSLFVFIPAMVSFCTSISP 117
            LYV+LKYFSAP+ LVQLFCLYGYSLFVFIPA+   C S+ P
Sbjct: 182 ALYVVLKYFSAPSGLVQLFCLYGYSLFVFIPAL---CLSVVP 220


>AT3G05280.1 | Symbols:  | Integral membrane Yip1 family protein |
           chr3:1503992-1505554 REVERSE LENGTH=281
          Length = 281

 Score =  169 bits (428), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 81/98 (82%), Positives = 89/98 (90%), Gaps = 3/98 (3%)

Query: 20  YGPFWICTTLIFVAASIGTFVTYLAHKLKDKEWNYDINLVTWSAGLFYGYVTVVPLCLYV 79
           YGPFWICTTLIFVAASIGTFVTY+AHK K +EWNYDINLVTWSAG+FYGYVT+VPL LYV
Sbjct: 125 YGPFWICTTLIFVAASIGTFVTYIAHKWKKQEWNYDINLVTWSAGVFYGYVTIVPLALYV 184

Query: 80  ILKYFSAPASLVQLFCLYGYSLFVFIPAMVSFCTSISP 117
           +LKYFSAP+ LVQLFCLYGYSLFVFIPA+   C S+ P
Sbjct: 185 VLKYFSAPSGLVQLFCLYGYSLFVFIPAL---CLSVVP 219


>AT2G39805.1 | Symbols:  | Integral membrane Yip1 family protein |
           chr2:16610216-16612353 REVERSE LENGTH=275
          Length = 275

 Score = 89.4 bits (220), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 43/97 (44%), Positives = 60/97 (61%), Gaps = 2/97 (2%)

Query: 12  EFTVNVRRYGPFWICTTLIFVAASIGTFVTYLAHKLKDKE--WNYDINLVTWSAGLFYGY 69
           +   N   YG  WICTTL+FV AS+G   TYL  K  D    W +D+N +  +A + YGY
Sbjct: 113 KIDANPDLYGLVWICTTLVFVLASLGNCATYLVKKRTDSNAPWIFDVNYMNLAASIIYGY 172

Query: 70  VTVVPLCLYVILKYFSAPASLVQLFCLYGYSLFVFIP 106
             +VPL  Y  L+Y  + A L++ +CL+GYSLF+F+P
Sbjct: 173 AIIVPLGFYFALRYMGSKADLLRFWCLWGYSLFIFVP 209


>AT2G39805.2 | Symbols:  | Integral membrane Yip1 family protein |
           chr2:16610216-16612353 REVERSE LENGTH=276
          Length = 276

 Score = 89.4 bits (220), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 43/97 (44%), Positives = 60/97 (61%), Gaps = 2/97 (2%)

Query: 12  EFTVNVRRYGPFWICTTLIFVAASIGTFVTYLAHKLKDKE--WNYDINLVTWSAGLFYGY 69
           +   N   YG  WICTTL+FV AS+G   TYL  K  D    W +D+N +  +A + YGY
Sbjct: 114 KIDANPDLYGLVWICTTLVFVLASLGNCATYLVKKRTDSNAPWIFDVNYMNLAASIIYGY 173

Query: 70  VTVVPLCLYVILKYFSAPASLVQLFCLYGYSLFVFIP 106
             +VPL  Y  L+Y  + A L++ +CL+GYSLF+F+P
Sbjct: 174 AIIVPLGFYFALRYMGSKADLLRFWCLWGYSLFIFVP 210