Miyakogusa Predicted Gene

Lj1g3v4931730.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4931730.2 Non Chatacterized Hit- tr|I1HIT8|I1HIT8_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,38.46,1e-17,seg,NULL; UNCHARACTERIZED,NULL,CUFF.34042.2
         (153 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G27490.1 | Symbols:  | Integral membrane Yip1 family protein ...   229   6e-61
AT3G05280.1 | Symbols:  | Integral membrane Yip1 family protein ...   218   2e-57
AT2G39805.1 | Symbols:  | Integral membrane Yip1 family protein ...    84   5e-17
AT2G39805.2 | Symbols:  | Integral membrane Yip1 family protein ...    84   5e-17

>AT5G27490.1 | Symbols:  | Integral membrane Yip1 family protein |
           chr5:9703130-9704653 REVERSE LENGTH=282
          Length = 282

 Score =  229 bits (584), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 108/153 (70%), Positives = 126/153 (82%), Gaps = 1/153 (0%)

Query: 1   MMSG-KYTSIDNQQLQGSXXXXXXXXXXXXKFTDSNLKTFPPSETQGKITGGSRPPRDAD 59
           MMSG  YT+ID+Q++ GS            KF DSNL+TFPPS TQGKI+GG+ PPRDAD
Sbjct: 2   MMSGGSYTNIDHQKVSGSVPAVPDPGHVTVKFADSNLQTFPPSATQGKISGGTNPPRDAD 61

Query: 60  DSFSKPVSGSDEPQQQGGWLHTFTVAAYKPYFDIDSSDVLERIKDSLFPFRGTFNEKTAT 119
           D+FS+PV+G+ +  Q  GWLH FTV AYKPYFD+D+SDV+ER+K+SLFPFRGTF EKTA 
Sbjct: 62  DTFSRPVNGTTDEPQSSGWLHRFTVGAYKPYFDVDTSDVVERLKESLFPFRGTFTEKTAN 121

Query: 120 NPDLYGPFWICTTLIFVAASIGTFVTYLAHKLK 152
           NPDLYGPFWICTTLIFVAASIGTFVTY+AHKLK
Sbjct: 122 NPDLYGPFWICTTLIFVAASIGTFVTYIAHKLK 154


>AT3G05280.1 | Symbols:  | Integral membrane Yip1 family protein |
           chr3:1503992-1505554 REVERSE LENGTH=281
          Length = 281

 Score =  218 bits (554), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 106/153 (69%), Positives = 122/153 (79%), Gaps = 1/153 (0%)

Query: 1   MMSG-KYTSIDNQQLQGSXXXXXXXXXXXXKFTDSNLKTFPPSETQGKITGGSRPPRDAD 59
           MMSG  YT+ID+Q++ GS            KF +SNL+TFPPS TQGKI+GGS PPRDAD
Sbjct: 1   MMSGGNYTTIDSQKVSGSVPSVPDPGHTTVKFAESNLQTFPPSATQGKISGGSNPPRDAD 60

Query: 60  DSFSKPVSGSDEPQQQGGWLHTFTVAAYKPYFDIDSSDVLERIKDSLFPFRGTFNEKTAT 119
           DSFS   +GS +  Q GGWLH FTV AYKP+FD+D+SDV+ER+K+SLFPFRGTF EKTA 
Sbjct: 61  DSFSGHGNGSTDEPQSGGWLHKFTVGAYKPFFDVDTSDVVERLKESLFPFRGTFTEKTAD 120

Query: 120 NPDLYGPFWICTTLIFVAASIGTFVTYLAHKLK 152
            PDLYGPFWICTTLIFVAASIGTFVTY+AHK K
Sbjct: 121 KPDLYGPFWICTTLIFVAASIGTFVTYIAHKWK 153


>AT2G39805.1 | Symbols:  | Integral membrane Yip1 family protein |
           chr2:16610216-16612353 REVERSE LENGTH=275
          Length = 275

 Score = 83.6 bits (205), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 50/122 (40%), Positives = 64/122 (52%), Gaps = 14/122 (11%)

Query: 34  SNLKTFPPSETQGKITGGSRPPRDADDSFSKPVSGSDEPQQQ--GGWLHTFTVAAYKPYF 91
           ++++ FPP+   G  T G +       +   P  G   P QQ    W   F V +Y  YF
Sbjct: 41  ASMQIFPPN--LGNNTKGYQ-------TLESPTEG---PAQQPSNNWKGFFNVYSYTQYF 88

Query: 92  DIDSSDVLERIKDSLFPFRGTFNEKTATNPDLYGPFWICTTLIFVAASIGTFVTYLAHKL 151
           D+D+  VL R+  SL+P  G F  K   NPDLYG  WICTTL+FV AS+G   TYL  K 
Sbjct: 89  DVDTDVVLNRLMSSLYPTSGDFFNKIDANPDLYGLVWICTTLVFVLASLGNCATYLVKKR 148

Query: 152 KD 153
            D
Sbjct: 149 TD 150


>AT2G39805.2 | Symbols:  | Integral membrane Yip1 family protein |
           chr2:16610216-16612353 REVERSE LENGTH=276
          Length = 276

 Score = 83.6 bits (205), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 47/120 (39%), Positives = 61/120 (50%), Gaps = 9/120 (7%)

Query: 34  SNLKTFPPSETQGKITGGSRPPRDADDSFSKPVSGSDEPQQQGGWLHTFTVAAYKPYFDI 93
           ++++ FPP+   G  T G +       +   P       Q    W   F V +Y  YFD+
Sbjct: 41  ASMQIFPPN--LGNNTKGYQ-------TLESPTVEGPAQQPSNNWKGFFNVYSYTQYFDV 91

Query: 94  DSSDVLERIKDSLFPFRGTFNEKTATNPDLYGPFWICTTLIFVAASIGTFVTYLAHKLKD 153
           D+  VL R+  SL+P  G F  K   NPDLYG  WICTTL+FV AS+G   TYL  K  D
Sbjct: 92  DTDVVLNRLMSSLYPTSGDFFNKIDANPDLYGLVWICTTLVFVLASLGNCATYLVKKRTD 151