Miyakogusa Predicted Gene
- Lj1g3v4931460.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v4931460.1 Non Chatacterized Hit- tr|I3SCH1|I3SCH1_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=2
SV,70.49,1e-17,seg,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL,CUFF.33637.1
(183 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G19580.1 | Symbols: TET2 | tetraspanin2 | chr2:8472393-847502... 85 3e-17
AT5G46700.1 | Symbols: TET1, TRN2 | Tetraspanin family protein |... 59 1e-09
AT2G23810.1 | Symbols: TET8 | tetraspanin8 | chr2:10135859-10137... 59 2e-09
AT4G30430.1 | Symbols: TET9 | tetraspanin9 | chr4:14879029-14880... 50 6e-07
AT1G63260.1 | Symbols: TET10 | tetraspanin10 | chr1:23467105-234... 50 1e-06
AT1G63260.3 | Symbols: TET10 | tetraspanin10 | chr1:23466994-234... 50 1e-06
AT1G63260.2 | Symbols: TET10 | tetraspanin10 | chr1:23466975-234... 50 1e-06
AT1G18520.1 | Symbols: TET11 | tetraspanin11 | chr1:6375051-6376... 48 3e-06
AT4G28050.1 | Symbols: TET7 | tetraspanin7 | chr4:13942566-13943... 47 1e-05
>AT2G19580.1 | Symbols: TET2 | tetraspanin2 | chr2:8472393-8475021
REVERSE LENGTH=270
Length = 270
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 34/56 (60%), Positives = 47/56 (83%)
Query: 99 PGRGYRESRLDGFSAWLRNHVTGSRSWNRIRTCLADSDVCIKLTQDYITANQFFNS 154
PGRGY+E RL+GFS WL+ +V S++W R+R CLAD++VC KL Q++ITA+QFF+S
Sbjct: 105 PGRGYKEYRLEGFSNWLKENVVDSKNWGRLRACLADTNVCPKLNQEFITADQFFSS 160
>AT5G46700.1 | Symbols: TET1, TRN2 | Tetraspanin family protein |
chr5:18951035-18952439 FORWARD LENGTH=269
Length = 269
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 33/58 (56%)
Query: 99 PGRGYRESRLDGFSAWLRNHVTGSRSWNRIRTCLADSDVCIKLTQDYITANQFFNSRI 156
P R Y E L FS WLR V S W RIRTCL+ + +C +L Q Y A FFN+ +
Sbjct: 105 PSRAYLEYSLQDFSGWLRRRVQRSYKWERIRTCLSTTTICPELNQRYTLAQDFFNAHL 162
>AT2G23810.1 | Symbols: TET8 | tetraspanin8 | chr2:10135859-10137352
REVERSE LENGTH=273
Length = 273
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 100 GRGYRESRLDGFSAWLRNHVTGSRSWNRIRTCLADSDVCIKLTQDYIT--ANQFFNSRIT 157
G+GY+E +L +S WL+ V ++WN+IR+CL +S VC KL ++ N F+ +T
Sbjct: 107 GKGYKEYKLGDYSTWLQKRVENGKNWNKIRSCLVESKVCSKLEAKFVNVPVNSFYKEHLT 166
>AT4G30430.1 | Symbols: TET9 | tetraspanin9 | chr4:14879029-14880272
REVERSE LENGTH=272
Length = 272
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 8/65 (12%)
Query: 100 GRGYRESRLDGFSAWLRNHVTGSRSWNRIRTCLADSDVCIKLTQDYITANQFFNSRITVS 159
G+ Y+E RL+ +S WL+ V ++ WN IR+CL +S C L + +TAN TVS
Sbjct: 107 GKAYKEYRLEAYSDWLQRRVNNAKHWNSIRSCLYESKFCYNL--ELVTANH------TVS 158
Query: 160 LLYRS 164
Y+
Sbjct: 159 DFYKE 163
>AT1G63260.1 | Symbols: TET10 | tetraspanin10 |
chr1:23467105-23468945 REVERSE LENGTH=284
Length = 284
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 36/59 (61%)
Query: 99 PGRGYRESRLDGFSAWLRNHVTGSRSWNRIRTCLADSDVCIKLTQDYITANQFFNSRIT 157
PG Y+E +L+ +S+W + + +W R+++CL S+ C KL++ Y T Q ++ +T
Sbjct: 106 PGLRYKEYKLNDYSSWFLKQLNNTSNWIRLKSCLVKSEQCRKLSKKYKTIKQLKSAELT 164
>AT1G63260.3 | Symbols: TET10 | tetraspanin10 |
chr1:23466994-23468945 REVERSE LENGTH=277
Length = 277
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 36/59 (61%)
Query: 99 PGRGYRESRLDGFSAWLRNHVTGSRSWNRIRTCLADSDVCIKLTQDYITANQFFNSRIT 157
PG Y+E +L+ +S+W + + +W R+++CL S+ C KL++ Y T Q ++ +T
Sbjct: 106 PGLRYKEYKLNDYSSWFLKQLNNTSNWIRLKSCLVKSEQCRKLSKKYKTIKQLKSAELT 164
>AT1G63260.2 | Symbols: TET10 | tetraspanin10 |
chr1:23466975-23468945 REVERSE LENGTH=258
Length = 258
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 36/59 (61%)
Query: 99 PGRGYRESRLDGFSAWLRNHVTGSRSWNRIRTCLADSDVCIKLTQDYITANQFFNSRIT 157
PG Y+E +L+ +S+W + + +W R+++CL S+ C KL++ Y T Q ++ +T
Sbjct: 106 PGLRYKEYKLNDYSSWFLKQLNNTSNWIRLKSCLVKSEQCRKLSKKYKTIKQLKSAELT 164
>AT1G18520.1 | Symbols: TET11 | tetraspanin11 | chr1:6375051-6376178
FORWARD LENGTH=271
Length = 271
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 96 KLFPGRGYRESRLDGFSAWLRNHVTGSRSWNRIRTCLADSDVCIKLTQDYIT--ANQFFN 153
++ GRGY+E R FS WL V G R W IR+CLA+++VC L+ ++ A+ F++
Sbjct: 104 RVVSGRGYKEYRTVDFSTWLNGFVGGKR-WVGIRSCLAEANVCDDLSDGRVSQIADAFYH 162
Query: 154 SRIT 157
++
Sbjct: 163 KNLS 166
>AT4G28050.1 | Symbols: TET7 | tetraspanin7 | chr4:13942566-13943621
REVERSE LENGTH=263
Length = 263
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 101 RGYRESRLDGFSAWLRNHVTGSRSWNRIRTCLADSDVCIKLTQDY--ITANQFFNSRI 156
RGY+E + +S WL+ V +++W RIR+CL SDVC Y I F+ S +
Sbjct: 108 RGYKEYHVADYSNWLQKRVNNAKNWERIRSCLMYSDVCSTYRTRYASINVEDFYKSNL 165