Miyakogusa Predicted Gene
- Lj1g3v4931370.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v4931370.1 Non Chatacterized Hit- tr|I1JRC0|I1JRC0_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.45854
PE,69.2,0,ZF_RANBP2_1,Zinc finger, RanBP2-type; Zinc finger
domain,Zinc finger, RanBP2-type; no
description,NU,NODE_34375_length_3045_cov_30.137274.path2.1
(914 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G55040.1 | Symbols: | zinc finger (Ran-binding) family prote... 557 e-158
AT1G70650.1 | Symbols: | Ran BP2/NZF zinc finger-like superfami... 197 3e-50
AT1G70650.2 | Symbols: | Ran BP2/NZF zinc finger-like superfami... 196 6e-50
AT1G48570.1 | Symbols: | zinc finger (Ran-binding) family prote... 167 2e-41
AT5G17790.1 | Symbols: VAR3 | zinc finger (Ran-binding) family p... 155 1e-37
AT1G53460.1 | Symbols: | BEST Arabidopsis thaliana protein matc... 61 3e-09
>AT1G55040.1 | Symbols: | zinc finger (Ran-binding) family protein
| chr1:20534895-20538901 FORWARD LENGTH=849
Length = 849
Score = 557 bits (1435), Expect = e-158, Method: Compositional matrix adjust.
Identities = 338/682 (49%), Positives = 430/682 (63%), Gaps = 73/682 (10%)
Query: 20 NPKS-----PFFLKPYSTIPDT---TSNQNNPKPSSLSARLSFVFDQIDVIEKERSQKHD 71
NPKS PF K ST P + ++++ N KPSSLS+RLSFVFDQID IEK S+K +
Sbjct: 19 NPKSHRLFQPFLTKSLSTSPQSNTESTHEPNHKPSSLSSRLSFVFDQIDAIEKRHSEKDE 78
Query: 72 TLQRIRAWRESKTAQNDVVVTREQPVPPE--PTTPAAYEVIS-----------PAEVTKK 118
TL+RIRAWR+SK + P P+ P V+S P ++
Sbjct: 79 TLERIRAWRQSKQTHQ----LKTPPSAPQQDPDLREVESVVSNDKLDSCVVLEPIQIDSG 134
Query: 119 E-------VELVHPWPEWIQLMERLVHQNYFDHKRTDEDK-MVQDLGFEPPKVV----DD 166
E +ELVHPWPEW++LMERLV QNYFDH+R +D MV LG + V ++
Sbjct: 135 ELSKEKGVIELVHPWPEWMELMERLVKQNYFDHRRERDDDDMVNSLGIDVSSVGLGEDEN 194
Query: 167 AGLDFTKDLKSVLEACLNFGRDRFDILRSLSRQDIQILVGFGCPTVDKRVVFSSKVLRKH 226
G+ +D ++V AC NFG+DRFDILRSLSR DIQILVG GCP D++VVFS K+LRK
Sbjct: 195 VGVALFQDFRAVQNACSNFGKDRFDILRSLSRNDIQILVGHGCPATDRKVVFSGKLLRKR 254
Query: 227 VHLDEGDVCSSCILRNTCEKAYLLTNKEDEARTIDVMRLLLTFGFDPINGSVVNKSLLKQ 286
VHLDEGDVCSSC LRN+CEKA+LLTNKEDEARTID+MR+L T+GFDP+NG+V NKSLLK+
Sbjct: 255 VHLDEGDVCSSCSLRNSCEKAFLLTNKEDEARTIDLMRILFTYGFDPLNGTVANKSLLKK 314
Query: 287 KSVRTVVRKLLHEVVKLSSVPIDPNLSXXXXXXXXXXXXXXXXXXXRRVGRDDIEMKKGD 346
KSV++VVRKLLHE+VKLS+VPIDPNL+ RRVGRDD+EMKKGD
Sbjct: 315 KSVKSVVRKLLHEIVKLSAVPIDPNLTPPVIKRAPPKVKQPPPTPKRRVGRDDVEMKKGD 374
Query: 347 WLCPKCDFMNFAKNNACLQCDAKRPKRQLLPGEWECPQCNFLNYRRNVVCFHCECKRPPD 406
WLCPKCDFMNFAKN CLQCDAKRPKRQLLPGEWECP+CNFLNYRRN+ CFHC+CKRP D
Sbjct: 375 WLCPKCDFMNFAKNTICLQCDAKRPKRQLLPGEWECPECNFLNYRRNMACFHCDCKRPAD 434
Query: 407 EFLENKMQDRNHSPKPKFDKMGSRQEVSNAWNFDFDDNESDGADVAAFEYADAHAIDEDF 466
LENK Q+ + + D++ R +VSNAWNFDFDD+ESDGA+VAAFEYAD+ +E
Sbjct: 435 AILENKPQETYRFTEAQTDRVVKRDDVSNAWNFDFDDDESDGAEVAAFEYADSSKKNE-- 492
Query: 467 PSDNNARRGNYKGREDDFEKNGRLQGSHDGEYANPDHSRPRIGXXXXXXXXXXXSYEL-E 525
N R + E++F G L RP +G SYE+ E
Sbjct: 493 ----NLLREGLRDPEEEF---GNLPPGARESSEFGRSRRPGVGFDDFDDEDDIDSYEIDE 545
Query: 526 TQNSSTRMEPSKNN-----ISETEDYLESEDSDDTYDKILTRDKTATGRSRQNRSIRKNT 580
++ +E ++++ SE E + ES+ + + G S + S +K+
Sbjct: 546 SKERDVPVEGARSSFASDEFSEDEKFPESKSGFNAH---------RGGSSNFHNSGKKHG 596
Query: 581 SYTG--SKGDKLDFDSDEELSVLSNFKSSHVSAAGQKRKDRG-PTKKLSFGSESDVDVGA 637
+ G S+ D+L F SD+E+S +KSSHV++ RG P++KL+FGS+ +
Sbjct: 597 NSKGGFSRDDELGFSSDDEVSANPRWKSSHVAST-----QRGPPSRKLTFGSDEEF---- 647
Query: 638 GLYSDEDDDLNESYASRKNKGN 659
GL SD +DD S R + N
Sbjct: 648 GLDSDMEDDSPRSGLRRGQRNN 669
>AT1G70650.1 | Symbols: | Ran BP2/NZF zinc finger-like superfamily
protein | chr1:26638158-26640126 FORWARD LENGTH=466
Length = 466
Score = 197 bits (500), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 114/325 (35%), Positives = 158/325 (48%), Gaps = 74/325 (22%)
Query: 124 HPWPEWIQLMERLVHQNYFDHKRTDEDKMVQDLGFEPPKVVDDAGLDFTKDLKSVLEACL 183
HPWPEW+ LM L + YF E+ ++ L +K+ + ACL
Sbjct: 44 HPWPEWLDLMGMLAKKGYF------EESLIP--------------LMSSKESNHIRTACL 83
Query: 184 NFGRDRFDILRSLSRQDIQILVGFGCPTVDKRVVFSSKVLRKHVHLDEGDVCSSCILRNT 243
NF R RF ++R+LS++DI+++ G GCP+ D++VV S K LR +V +DEG+VC SC LR
Sbjct: 84 NFARHRFTLVRNLSKKDIKVIAGCGCPSTDRKVVNSGKRLRAYVGIDEGNVCGSCNLRGK 143
Query: 244 CEKAYLLTNKEDEARTIDVMRLLLTFGFDPINGSVVNKSLLKQKSVRTVVRKLLHEVVKL 303
CE+AY ++ ARTIDVMRLLLT+G D I+ +V N++ + K V VRKLL E V
Sbjct: 144 CERAYAQARDDEGARTIDVMRLLLTYGLDSISPTVENRA-CQTKLVEDSVRKLLRESVAY 202
Query: 304 SSVPIDPNLSXXXXXXXXXXXXXXXXXXXRRVGRDDIEMKKGDWLCPKCDFMNFAKNNAC 363
S + + + D + GDW C +C F+NFAKN C
Sbjct: 203 SLTDFE--------SAETETAGDELQPNSQDIDERDPRKRPGDWYCTECKFLNFAKNIRC 254
Query: 364 LQCDA---------------------------------------------KRPKRQLLPG 378
L+CD K RQ+ PG
Sbjct: 255 LRCDVFSEERLKQLKEEQKDHLPLKKGDWICQTCNFLNFSKNTRCLRCKDKPTLRQINPG 314
Query: 379 EWECPQCNFLNYRRNVVCFHCECKR 403
EWEC CN++N+RRN +C C+ KR
Sbjct: 315 EWECESCNYINFRRNSICLKCDHKR 339
>AT1G70650.2 | Symbols: | Ran BP2/NZF zinc finger-like superfamily
protein | chr1:26638158-26641949 FORWARD LENGTH=595
Length = 595
Score = 196 bits (498), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 114/325 (35%), Positives = 158/325 (48%), Gaps = 74/325 (22%)
Query: 124 HPWPEWIQLMERLVHQNYFDHKRTDEDKMVQDLGFEPPKVVDDAGLDFTKDLKSVLEACL 183
HPWPEW+ LM L + YF E+ ++ L +K+ + ACL
Sbjct: 44 HPWPEWLDLMGMLAKKGYF------EESLIP--------------LMSSKESNHIRTACL 83
Query: 184 NFGRDRFDILRSLSRQDIQILVGFGCPTVDKRVVFSSKVLRKHVHLDEGDVCSSCILRNT 243
NF R RF ++R+LS++DI+++ G GCP+ D++VV S K LR +V +DEG+VC SC LR
Sbjct: 84 NFARHRFTLVRNLSKKDIKVIAGCGCPSTDRKVVNSGKRLRAYVGIDEGNVCGSCNLRGK 143
Query: 244 CEKAYLLTNKEDEARTIDVMRLLLTFGFDPINGSVVNKSLLKQKSVRTVVRKLLHEVVKL 303
CE+AY ++ ARTIDVMRLLLT+G D I+ +V N++ + K V VRKLL E V
Sbjct: 144 CERAYAQARDDEGARTIDVMRLLLTYGLDSISPTVENRA-CQTKLVEDSVRKLLRESVAY 202
Query: 304 SSVPIDPNLSXXXXXXXXXXXXXXXXXXXRRVGRDDIEMKKGDWLCPKCDFMNFAKNNAC 363
S + + + D + GDW C +C F+NFAKN C
Sbjct: 203 SLTDFE--------SAETETAGDELQPNSQDIDERDPRKRPGDWYCTECKFLNFAKNIRC 254
Query: 364 LQCDA---------------------------------------------KRPKRQLLPG 378
L+CD K RQ+ PG
Sbjct: 255 LRCDVFSEERLKQLKEEQKDHLPLKKGDWICQTCNFLNFSKNTRCLRCKDKPTLRQINPG 314
Query: 379 EWECPQCNFLNYRRNVVCFHCECKR 403
EWEC CN++N+RRN +C C+ KR
Sbjct: 315 EWECESCNYINFRRNSICLKCDHKR 339
>AT1G48570.1 | Symbols: | zinc finger (Ran-binding) family protein
| chr1:17955455-17957661 REVERSE LENGTH=455
Length = 455
Score = 167 bits (424), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 111/335 (33%), Positives = 167/335 (49%), Gaps = 64/335 (19%)
Query: 124 HPWPEWIQLMERLVHQNYFDHKRTDEDKMVQDLGFEPPKVVDDAGLDFTKDLKSVLEACL 183
HPWPEWI ++RL + YF K T++D + Q++ V +ACL
Sbjct: 60 HPWPEWITFVDRLKTKGYFT-KDTEDDTVYQEMIL-------------------VKDACL 99
Query: 184 NFGRDRFDILRSLSRQDIQILVGFGCPTVDKRVVFSSKVLRKHVHLDEGDVCSSCILRNT 243
+F RDR+D+LRSLS D+Q LV GCP + ++ V SSK +R HV L+EGDVC SC LR++
Sbjct: 100 SFARDRYDVLRSLSSGDVQALVERGCPNLFRKTVNSSKRIRAHVKLNEGDVCGSCDLRSS 159
Query: 244 CEKAY-LLTNKEDEARTIDVMR---------LLLTFGFDPINGSVVNKSL------LKQK 287
C++AY +L + E +ART+DVMR ++++ G P +V++S L +
Sbjct: 160 CDRAYVILKDTEADARTVDVMRLLLFNALDSIVISRGEVPPGKELVHESARRLLLELVEF 219
Query: 288 SVRTVVRKLLHEVVKLSSVPIDPNL--SXXXXXXXXXXXXXXXXXXXRRVG--------- 336
S + ++ L K SS+P S +RV
Sbjct: 220 SEKPLIPALPKPSSKESSLPSKERAFKSRNDEPSQRVAFKSRNDDPSQRVAFKSRNDEPS 279
Query: 337 -------------RDDIEMKKGDWLCPKCDFMNFAKNNACLQCDA---KRPKRQLLP-GE 379
+ D + DW CPKCDF+NFA+N C +C+ +RP ++ G+
Sbjct: 280 HRVAFKSRNDESSQRDRPLYSADWACPKCDFVNFARNERCRECNEVADRRPVAAVVKEGD 339
Query: 380 WECPQCNFLNYRRNVVCFHCECKRPPDEFLENKMQ 414
W CP+C+FLN+ RN C C+ K P + N ++
Sbjct: 340 WLCPECSFLNFTRNQSCLKCKAKGPKKTSMVNIVE 374
Score = 89.7 bits (221), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 37/65 (56%), Positives = 45/65 (69%)
Query: 340 IEMKKGDWLCPKCDFMNFAKNNACLQCDAKRPKRQLLPGEWECPQCNFLNYRRNVVCFHC 399
+EMKKGDW C C +MNFA N C +C +R K PG+WECP C+F+N+RRN C C
Sbjct: 373 VEMKKGDWNCTGCGYMNFASNKQCRECREQRHKTLAEPGDWECPSCDFVNFRRNDACKKC 432
Query: 400 ECKRP 404
ECKRP
Sbjct: 433 ECKRP 437
>AT5G17790.1 | Symbols: VAR3 | zinc finger (Ran-binding) family
protein | chr5:5869810-5872671 REVERSE LENGTH=758
Length = 758
Score = 155 bits (392), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 112/350 (32%), Positives = 169/350 (48%), Gaps = 45/350 (12%)
Query: 127 PEWIQLMERLVHQNYFDHKRTDEDKMVQDLGFEPPKVVDDAGLDFTKDLKSVLEACLNFG 186
PEW +L++ L YF +D + G E + F +L ACL
Sbjct: 93 PEWTELLQSLSKAGYF----SDSGSIS---GLE-----SEFFPGFPDELLRPALACLALA 140
Query: 187 RDRFDILRSLSRQDIQILVGFGCPTVDKRVVFSSKVLRKHVHLDEGDVCSSCILRNTCEK 246
R+R ++L LSR+D+++LV G P + K S K + S LR+ +
Sbjct: 141 RERPELLEMLSRRDVEVLVENGKPFLFKTGPDSLKRM-------------SLYLRSGLQG 187
Query: 247 AYLLTNKEDEARTIDVMRLLLTFGFDPINGSVVNKSLLKQKSVRTVVRKLLHEVVKLSSV 306
L + E +A T+D+MRL+L++ D + S +K K+ + + VR LL ++ K+S
Sbjct: 188 IGKLMDME-KASTVDLMRLILSYVVD-VASSEESKQHNKE-IMESSVRSLLSQIAKMSLR 244
Query: 307 PIDPNLSXXXXXXXXXXXXXXXXXXXRRVGRDDIEMKKGDWLCPKCDFMNFAKNNACLQC 366
P + N+ R ++++EMK+GDW+C +C MNFA+N C QC
Sbjct: 245 PPESNVHDTMQNQYSDRDGQGV-----RSFQNNVEMKRGDWICSRCSGMNFARNVKCFQC 299
Query: 367 DAKRPKRQLLPGEWECPQCNFLNYRRNVVCFHCECKRPPDEFLENKMQDRNHSPKPKFD- 425
D RPKRQL EWECPQC+F NY RNV C C+CKRP D L + D +S P+ +
Sbjct: 300 DEARPKRQLTGSEWECPQCDFYNYGRNVACLRCDCKRPRDSSLNSANSD--YSSDPELER 357
Query: 426 KMGSRQEVSNAWNFDFDDNESDGADVAAFEYADAHAIDEDFPSDNNARRG 475
++ ++ + W SD A++ DEDFP R+G
Sbjct: 358 RLVENEKKAQRWLSKVAQGGSD---------ANSVDTDEDFPEIMPLRKG 398
>AT1G53460.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: Ran BP2/NZF zinc finger-like superfamily protein
(TAIR:AT1G70650.2); Has 485 Blast hits to 413 proteins
in 88 species: Archae - 11; Bacteria - 27; Metazoa -
119; Fungi - 17; Plants - 101; Viruses - 2; Other
Eukaryotes - 208 (source: NCBI BLink). |
chr1:19954558-19956509 REVERSE LENGTH=314
Length = 314
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 41/61 (67%)
Query: 185 FGRDRFDILRSLSRQDIQILVGFGCPTVDKRVVFSSKVLRKHVHLDEGDVCSSCILRNTC 244
FG+D +I + LS D++ +V FGCP+++KR VF++K LR + E +VC C+L+ C
Sbjct: 190 FGKDYQEIAKWLSGSDLKKIVLFGCPSLEKRAVFAAKTLRNFFDIHENNVCEKCVLKEKC 249
Query: 245 E 245
+
Sbjct: 250 K 250