Miyakogusa Predicted Gene

Lj1g3v4931290.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4931290.1 Non Chatacterized Hit- tr|I0Z6E7|I0Z6E7_9CHLO
Uncharacterized protein OS=Coccomyxa subellipsoidea
C-,53.42,6e-16,seg,NULL; SUBFAMILY NOT NAMED,NULL; AMP-ACTIVATED
PROTEIN KINASE, GAMMA REGULATORY SUBUNIT,NULL;
Dom,NODE_3758_length_2301_cov_122.059975.path2.1
         (483 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G09020.1 | Symbols: SNF4, ATSNF4 | homolog of yeast sucrose n...   652   0.0  
AT1G27070.1 | Symbols:  | 5'-AMP-activated protein kinase-relate...    55   8e-08
AT4G16360.3 | Symbols:  | 5'-AMP-activated protein kinase beta-2...    50   3e-06
AT4G16360.1 | Symbols:  | 5'-AMP-activated protein kinase beta-2...    50   3e-06
AT4G16360.2 | Symbols:  | 5'-AMP-activated protein kinase beta-2...    50   3e-06
AT3G01510.1 | Symbols: LSF1 | like SEX4 1 | chr3:198855-201682 R...    49   6e-06

>AT1G09020.1 | Symbols: SNF4, ATSNF4 | homolog of yeast sucrose
           nonfermenting 4 | chr1:2900149-2904212 REVERSE
           LENGTH=487
          Length = 487

 Score =  652 bits (1683), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/488 (65%), Positives = 378/488 (77%), Gaps = 7/488 (1%)

Query: 1   MFAXXXXXXXXXXXXXXXILIPKRFVWPYGGTRVSLIGSFTRWSEHIPMSPMEGCPAVFQ 60
           MF                +L P RFVWPYGG RV L GSFTRW+EH+PMSP+EGCP VFQ
Sbjct: 1   MFGSTLDSSRGNSAASGQLLTPTRFVWPYGGRRVFLSGSFTRWTEHVPMSPLEGCPTVFQ 60

Query: 61  VIWSLTPGYHQYKFIVDGEWRHDEQKPFVNGNYGPMNTIYLAREPNTLPTISSAETPGRS 120
           VI +LTPGYHQYKF VDGEWRHDE +PFV+GN G +NTI++   P+ +P   S ET GRS
Sbjct: 61  VICNLTPGYHQYKFFVDGEWRHDEHQPFVSGNGGVVNTIFIT-GPDMVPAGFSPETLGRS 119

Query: 121 NMDVDNDVFGHVG-----TNPRMLGSDLEVSRHRISIFLSTHTAYDLLPESGKVVALDIN 175
           NMDVD DVF           PRM G DLE+SRHRIS+ LST TAY+LLPESGKV+ALD+N
Sbjct: 120 NMDVD-DVFLRTADPSQEAVPRMSGVDLELSRHRISVLLSTRTAYELLPESGKVIALDVN 178

Query: 176 LPVKQAFHALHEQGVSMAPLWDFGRSKFVGVLSAMDFILILKELGNHGSKLTEEQLETHT 235
           LPVKQAFH L+EQG+ +APLWDFG+ +FVGVL  +DFILIL+ELG HGS LTEE+LETHT
Sbjct: 179 LPVKQAFHILYEQGIPLAPLWDFGKGQFVGVLGPLDFILILRELGTHGSNLTEEELETHT 238

Query: 236 IAAWKEGKLQQRRAVDSNGGSYPSLFVHAGPHEHLKDVALKVLQNKVSTVPIIHSPSEDG 295
           IAAWKEGK    R  D +G  YP   V  GP+++LKDVALK+LQNKV+ VP+I+S  +DG
Sbjct: 239 IAAWKEGKAHISRQYDGSGRPYPRPLVQVGPYDNLKDVALKILQNKVAAVPVIYSSLQDG 298

Query: 296 SFPQLLHLACLSGILKCICRHFKYXXXXXXXXXXXXXXXXXXTWVPKVGEPNGQPFAMLR 355
           S+PQLLHLA LSGILKCICR+F++                  TWVP++GE + +P A LR
Sbjct: 299 SYPQLLHLASLSGILKCICRYFRHSSSSLPILQQPICSIPLGTWVPRIGESSSKPLATLR 358

Query: 356 PNASLGAALSMFVQAGVSSIPIVDDNDSLVDIYSRSDITALAKDKAYTRISLDQISIHQA 415
           P+ASLG+AL++ VQA VSSIP+VDDNDSL+DIYSRSDITALAKDKAY +I LD +++HQA
Sbjct: 359 PHASLGSALALLVQAEVSSIPVVDDNDSLIDIYSRSDITALAKDKAYAQIHLDDMTVHQA 418

Query: 416 LLLGQDVNSPFGLHSGPRCYMCLRSDSLHKVMERLASPGVRRLVIVEAGSKRVEGIISLS 475
           L LGQD + P+G+ +G RC+MCLRSDSL KVMERLA+PGVRRLVIVEAGSKRVEGIISLS
Sbjct: 419 LQLGQDASPPYGIFNGQRCHMCLRSDSLVKVMERLANPGVRRLVIVEAGSKRVEGIISLS 478

Query: 476 DVFKFLLG 483
           DVF+FLLG
Sbjct: 479 DVFQFLLG 486


>AT1G27070.1 | Symbols:  | 5'-AMP-activated protein kinase-related |
           chr1:9396945-9399225 REVERSE LENGTH=532
          Length = 532

 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 39/76 (51%), Gaps = 3/76 (3%)

Query: 19  ILIPKRFVWPYGGTRVSLIGSFTRWSEHIPMSPMEGCPAVFQVIWSLTPGYHQYKFIVDG 78
           +L     VWP   + V L GSF  WS    M   E    VF +   L PG ++ KFIVDG
Sbjct: 451 LLRTASIVWPNSASEVLLTGSFDGWSTQRKMKKAEN--GVFSLSLKLYPGKYEIKFIVDG 508

Query: 79  EWRHDEQKPFV-NGNY 93
           +W+ D  +P V +G Y
Sbjct: 509 QWKVDPLRPIVTSGGY 524


>AT4G16360.3 | Symbols:  | 5'-AMP-activated protein kinase beta-2
           subunit protein | chr4:9245571-9246833 FORWARD
           LENGTH=261
          Length = 261

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 5/112 (4%)

Query: 21  IPKRFVWPYGGTRVSLIGSFTRWSEHIPMSPMEGCPAVFQVIWSLTPGYHQYKFIVDGEW 80
           IP    W +GG  +++ GS+  W      S ++     F ++  L  G ++Y+FIVDG+W
Sbjct: 74  IPTMITWCHGGKEIAVEGSWDNWKTR---SRLQRSGKDFTIMKVLPSGVYEYRFIVDGQW 130

Query: 81  RHDEQKPFVNGNYGPMNTIYLARE--PNTLPTISSAETPGRSNMDVDNDVFG 130
           RH  + P    + G    I   ++  P  + +IS  E P        N + G
Sbjct: 131 RHAPELPLARDDAGNTFNILDLQDYVPEDIQSISGFEPPQSPENSYSNLLLG 182


>AT4G16360.1 | Symbols:  | 5'-AMP-activated protein kinase beta-2
           subunit protein | chr4:9245662-9246833 FORWARD
           LENGTH=259
          Length = 259

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 5/112 (4%)

Query: 21  IPKRFVWPYGGTRVSLIGSFTRWSEHIPMSPMEGCPAVFQVIWSLTPGYHQYKFIVDGEW 80
           IP    W +GG  +++ GS+  W      S ++     F ++  L  G ++Y+FIVDG+W
Sbjct: 72  IPTMITWCHGGKEIAVEGSWDNWKTR---SRLQRSGKDFTIMKVLPSGVYEYRFIVDGQW 128

Query: 81  RHDEQKPFVNGNYGPMNTIYLARE--PNTLPTISSAETPGRSNMDVDNDVFG 130
           RH  + P    + G    I   ++  P  + +IS  E P        N + G
Sbjct: 129 RHAPELPLARDDAGNTFNILDLQDYVPEDIQSISGFEPPQSPENSYSNLLLG 180


>AT4G16360.2 | Symbols:  | 5'-AMP-activated protein kinase beta-2
           subunit protein | chr4:9245662-9246833 FORWARD
           LENGTH=258
          Length = 258

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 6/112 (5%)

Query: 21  IPKRFVWPYGGTRVSLIGSFTRWSEHIPMSPMEGCPAVFQVIWSLTPGYHQYKFIVDGEW 80
           IP    W +GG  +++ GS+  W      S ++     F ++  L  G ++Y+FIVDG+W
Sbjct: 72  IPTMITWCHGGKEIAVEGSWDNWK----TSRLQRSGKDFTIMKVLPSGVYEYRFIVDGQW 127

Query: 81  RHDEQKPFVNGNYGPMNTIYLARE--PNTLPTISSAETPGRSNMDVDNDVFG 130
           RH  + P    + G    I   ++  P  + +IS  E P        N + G
Sbjct: 128 RHAPELPLARDDAGNTFNILDLQDYVPEDIQSISGFEPPQSPENSYSNLLLG 179


>AT3G01510.1 | Symbols: LSF1 | like SEX4 1 | chr3:198855-201682
           REVERSE LENGTH=591
          Length = 591

 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 46/90 (51%), Gaps = 5/90 (5%)

Query: 25  FVWP-YGGTRVSLIGSFT-RWSEHIPMSPMEGCPAVFQVIWSLTPGYHQYKFIVDGEWRH 82
           FVW  + G  V L+G FT  W E I  +  +G P  F+    LT G + YK+I++G+WRH
Sbjct: 459 FVWNGHEGEEVLLVGDFTGNWKEPIKAT-HKGGPR-FETEVRLTQGKYYYKYIINGDWRH 516

Query: 83  DEQKPFVNGNYGPMNTIYLARE-PNTLPTI 111
               P    + G  N I +  +  N  PTI
Sbjct: 517 SATSPTERDDRGNTNNIIVVGDVANVRPTI 546