Miyakogusa Predicted Gene

Lj1g3v4931160.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4931160.1 Non Chatacterized Hit- tr|I3T2E9|I3T2E9_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=4
SV=1,90.91,0.000000000000001,DUF543,Protein of unknown function
DUF543; seg,NULL,CUFF.33631.1
         (73 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G72170.1 | Symbols:  | Domain of unknown function (DUF543) | ...    67   2e-12
AT1G22520.1 | Symbols:  | Domain of unknown function (DUF543) | ...    49   5e-07
AT1G22520.2 | Symbols:  | Domain of unknown function (DUF543) | ...    49   6e-07

>AT1G72170.1 | Symbols:  | Domain of unknown function (DUF543) |
          chr1:27156403-27157516 FORWARD LENGTH=102
          Length = 102

 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 29/44 (65%), Positives = 36/44 (81%)

Query: 1  MADNKEIIPPQYGLDAKWDACLDLTVCRFVFSSFVGALGGLLFF 44
          MA+ K+ +PP+Y ++AKWDACLDLTV RFV+SS  GA  GLLFF
Sbjct: 1  MAEKKDSVPPEYDVNAKWDACLDLTVRRFVYSSLGGAFAGLLFF 44


>AT1G22520.1 | Symbols:  | Domain of unknown function (DUF543) |
          chr1:7953299-7954304 REVERSE LENGTH=99
          Length = 99

 Score = 49.3 bits (116), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 22/34 (64%), Positives = 26/34 (76%)

Query: 11 QYGLDAKWDACLDLTVCRFVFSSFVGALGGLLFF 44
          +  ++AKWDACLDLT  RFV+SS  GA  GLLFF
Sbjct: 10 ESDVNAKWDACLDLTARRFVYSSLGGAFAGLLFF 43


>AT1G22520.2 | Symbols:  | Domain of unknown function (DUF543) |
          chr1:7952996-7954304 REVERSE LENGTH=179
          Length = 179

 Score = 49.3 bits (116), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 22/34 (64%), Positives = 26/34 (76%)

Query: 11 QYGLDAKWDACLDLTVCRFVFSSFVGALGGLLFF 44
          +  ++AKWDACLDLT  RFV+SS  GA  GLLFF
Sbjct: 10 ESDVNAKWDACLDLTARRFVYSSLGGAFAGLLFF 43