Miyakogusa Predicted Gene

Lj1g3v4919900.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4919900.1 Non Chatacterized Hit- tr|I0YUM6|I0YUM6_9CHLO
Uncharacterized protein (Fragment) OS=Coccomyxa
subell,51.04,0.000000000000006,Rad9,Rad9/Ddc1; seg,NULL; SUBFAMILY NOT
NAMED,NULL; DNA REPAIR PROTEIN RAD9,Rad9,CUFF.33611.1
         (302 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G05480.1 | Symbols: ATRAD9, RAD9 | cell cycle checkpoint cont...   323   1e-88
AT3G05480.3 | Symbols: RAD9 | cell cycle checkpoint control prot...   322   1e-88
AT3G05480.2 | Symbols: ATRAD9, RAD9 | cell cycle checkpoint cont...   243   2e-64

>AT3G05480.1 | Symbols: ATRAD9, RAD9 | cell cycle checkpoint control
           protein family | chr3:1585383-1588238 FORWARD LENGTH=439
          Length = 439

 Score =  323 bits (827), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 172/304 (56%), Positives = 206/304 (67%), Gaps = 15/304 (4%)

Query: 1   MNRLLSNFQSSLQEITVIATEPASLPPDSANDIGGKAVELRSYIDPTKDNDSSLHTQLWI 60
           +++LL NFQSSLQEIT+IAT+  S P D+A++IGGKAVE RSY+DPTKD DS LHTQLWI
Sbjct: 148 LSKLLGNFQSSLQEITIIATDQTSFPSDAASEIGGKAVEFRSYVDPTKDGDSLLHTQLWI 207

Query: 61  DPKEEFLQYVHTGDPIDVTFSVKELKAFLSFCEGCEVDIHFHFEKAGEPILMAPKFGLED 120
           DP EEFLQY H GDP+D+TFS+KELKAFL+FCEGCE DIH  FEKAGEPILMAPKFGL D
Sbjct: 208 DPSEEFLQYTHAGDPVDITFSLKELKAFLAFCEGCEADIHLFFEKAGEPILMAPKFGLGD 267

Query: 121 GSHSNFDATLVLATMLTSQLHEGAASEPLVVDARTHAQTEERNGSHAEEENCRTNTSELQ 180
           GS S+FDATLVLATML SQL EG  +EP      T     E+ GS  +E + R N SE  
Sbjct: 268 GSSSSFDATLVLATMLVSQLQEGIPAEPPEAANSTGGHAAEQVGSRPQERS-RQNASEHP 326

Query: 181 SDHTRVWSDLSATAVKNMSGLEERP-AQEQTVLNDNEQREIQRISTIRISRKTSAAGNNP 239
           SDHTRVWS+LS TA K+++G E+RP AQ Q  L      +I RI  + IS+        P
Sbjct: 327 SDHTRVWSELSGTATKSVNGTEDRPQAQGQPDL------DIHRIRNMEISKGGPVGDTAP 380

Query: 240 TGSNIC-RPTEKDSVQAPQDMLQDNNQAFSQHHPSNWVXXXXXXXXXXXXXXQYIQATPP 298
                  RPT+ D  +  +  +Q  NQ+FSQHHPSNWV                ++ATPP
Sbjct: 381 AAPPKSQRPTQIDHAEGSRVRVQ--NQSFSQHHPSNWVDANEEEEDDDEG----VEATPP 434

Query: 299 YYED 302
           + ED
Sbjct: 435 HNED 438


>AT3G05480.3 | Symbols: RAD9 | cell cycle checkpoint control protein
           family | chr3:1585383-1588238 FORWARD LENGTH=456
          Length = 456

 Score =  322 bits (826), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 172/304 (56%), Positives = 206/304 (67%), Gaps = 15/304 (4%)

Query: 1   MNRLLSNFQSSLQEITVIATEPASLPPDSANDIGGKAVELRSYIDPTKDNDSSLHTQLWI 60
           +++LL NFQSSLQEIT+IAT+  S P D+A++IGGKAVE RSY+DPTKD DS LHTQLWI
Sbjct: 165 LSKLLGNFQSSLQEITIIATDQTSFPSDAASEIGGKAVEFRSYVDPTKDGDSLLHTQLWI 224

Query: 61  DPKEEFLQYVHTGDPIDVTFSVKELKAFLSFCEGCEVDIHFHFEKAGEPILMAPKFGLED 120
           DP EEFLQY H GDP+D+TFS+KELKAFL+FCEGCE DIH  FEKAGEPILMAPKFGL D
Sbjct: 225 DPSEEFLQYTHAGDPVDITFSLKELKAFLAFCEGCEADIHLFFEKAGEPILMAPKFGLGD 284

Query: 121 GSHSNFDATLVLATMLTSQLHEGAASEPLVVDARTHAQTEERNGSHAEEENCRTNTSELQ 180
           GS S+FDATLVLATML SQL EG  +EP      T     E+ GS  +E + R N SE  
Sbjct: 285 GSSSSFDATLVLATMLVSQLQEGIPAEPPEAANSTGGHAAEQVGSRPQERS-RQNASEHP 343

Query: 181 SDHTRVWSDLSATAVKNMSGLEERP-AQEQTVLNDNEQREIQRISTIRISRKTSAAGNNP 239
           SDHTRVWS+LS TA K+++G E+RP AQ Q  L      +I RI  + IS+        P
Sbjct: 344 SDHTRVWSELSGTATKSVNGTEDRPQAQGQPDL------DIHRIRNMEISKGGPVGDTAP 397

Query: 240 TGSNIC-RPTEKDSVQAPQDMLQDNNQAFSQHHPSNWVXXXXXXXXXXXXXXQYIQATPP 298
                  RPT+ D  +  +  +Q  NQ+FSQHHPSNWV                ++ATPP
Sbjct: 398 AAPPKSQRPTQIDHAEGSRVRVQ--NQSFSQHHPSNWVDANEEEEDDDEG----VEATPP 451

Query: 299 YYED 302
           + ED
Sbjct: 452 HNED 455


>AT3G05480.2 | Symbols: ATRAD9, RAD9 | cell cycle checkpoint control
           protein family | chr3:1585383-1588238 FORWARD LENGTH=420
          Length = 420

 Score =  243 bits (619), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 147/304 (48%), Positives = 181/304 (59%), Gaps = 34/304 (11%)

Query: 1   MNRLLSNFQSSLQEITVIATEPASLPPDSANDIGGKAVELRSYIDPTKDNDSSLHTQLWI 60
           +++LL NFQSSLQEIT+IAT+  S P D+A++IGGKAVE RSY+DPTKD DS LHTQLWI
Sbjct: 148 LSKLLGNFQSSLQEITIIATDQTSFPSDAASEIGGKAVEFRSYVDPTKDGDSLLHTQLWI 207

Query: 61  DPKEEFLQYVHTGDPIDVTFSVKELKAFLSFCEGCEVDIHFHFEKAGEPILMAPKFGLED 120
           DP EEFLQY H    + VT               C  +++F       PILMAPKFGL D
Sbjct: 208 DPSEEFLQYTHAVTILSVT--------------ECH-NMYF----VARPILMAPKFGLGD 248

Query: 121 GSHSNFDATLVLATMLTSQLHEGAASEPLVVDARTHAQTEERNGSHAEEENCRTNTSELQ 180
           GS S+FDATLVLATML SQL EG  +EP      T     E+ GS  +E + R N SE  
Sbjct: 249 GSSSSFDATLVLATMLVSQLQEGIPAEPPEAANSTGGHAAEQVGSRPQERS-RQNASEHP 307

Query: 181 SDHTRVWSDLSATAVKNMSGLEERP-AQEQTVLNDNEQREIQRISTIRISRKTSAAGNNP 239
           SDHTRVWS+LS TA K+++G E+RP AQ Q  L      +I RI  + IS+        P
Sbjct: 308 SDHTRVWSELSGTATKSVNGTEDRPQAQGQPDL------DIHRIRNMEISKGGPVGDTAP 361

Query: 240 TGSNIC-RPTEKDSVQAPQDMLQDNNQAFSQHHPSNWVXXXXXXXXXXXXXXQYIQATPP 298
                  RPT+ D  +  +  +Q  NQ+FSQHHPSNWV                ++ATPP
Sbjct: 362 AAPPKSQRPTQIDHAEGSRVRVQ--NQSFSQHHPSNWVDANEEEEDDDEG----VEATPP 415

Query: 299 YYED 302
           + ED
Sbjct: 416 HNED 419