Miyakogusa Predicted Gene

Lj1g3v4916370.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4916370.2 Non Chatacterized Hit- tr|I1JQI6|I1JQI6_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.18502
PE,84.13,0,RF_PROK_I,Peptide chain release factor class I/class II;
prfA: peptide chain release factor 1,Peptid,CUFF.34580.2
         (413 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G62910.1 | Symbols: APG3 | Peptide chain release factor 1 | c...   536   e-152
AT2G47020.1 | Symbols:  | Peptide chain release factor 1 | chr2:...   207   1e-53
AT2G47020.2 | Symbols:  | Peptide chain release factor 1 | chr2:...   156   2e-38
AT5G36170.1 | Symbols: HCF109, ATPRFB | high chlorophyll fluores...   132   4e-31
AT5G36170.2 | Symbols: HCF109, ATPRFB | high chlorophyll fluores...   132   4e-31
AT1G56350.1 | Symbols:  | Peptide chain release factor 2 | chr1:...   116   3e-26
AT5G36170.3 | Symbols: HCF109, ATPRFB | high chlorophyll fluores...    99   8e-21
AT3G57190.1 | Symbols:  | peptide chain release factor, putative...    54   2e-07

>AT3G62910.1 | Symbols: APG3 | Peptide chain release factor 1 |
           chr3:23257661-23260386 REVERSE LENGTH=422
          Length = 422

 Score =  536 bits (1381), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 258/371 (69%), Positives = 295/371 (79%)

Query: 43  IVCMAEPYLITKLDSAEKTWKELSVKLADPDIVNNHTEYQKLAQXXXXXXXXXXXYRRFK 102
           +VCMAEPYLI K++S EKTWKELSVKLADPD+V+N +EYQKLAQ           +RRFK
Sbjct: 49  LVCMAEPYLIRKMESVEKTWKELSVKLADPDVVSNQSEYQKLAQSMSELDEVVTVFRRFK 108

Query: 103 DCEKSLEETKALAKDDGNDEDMAEMISFEVDSLSRQXXXXXXXXXXXXXXXXXXXXRNIM 162
           DCEK L E+K LAK+ G+DEDMAEMI  E++SL+++                    RNI+
Sbjct: 109 DCEKQLLESKVLAKEAGDDEDMAEMIGSEINSLTKEIEELEKQLKVLLLPSDPLDARNIL 168

Query: 163 IEVRAGTGGDEAGIWVGDLVRMYERYSERNSWKHSTISSSEAEKGGFKTFVMEIKGNCVY 222
           +EVRAGTGGDEA IW GDLVRMY+RYSER+SWK S +S SEAE GG+KT VMEIKGN VY
Sbjct: 169 LEVRAGTGGDEAAIWTGDLVRMYQRYSERSSWKFSMVSCSEAEHGGYKTCVMEIKGNRVY 228

Query: 223 SKLKYESGVHRVQRVPLTETQGRVHTSTATVAIMXXXXXXXXXXXXXXXXLTTARSGGAG 282
           SKLKYESGVHRVQRVP TETQGRVHTSTATVAIM                LT+ARSGGAG
Sbjct: 229 SKLKYESGVHRVQRVPQTETQGRVHTSTATVAIMPEADEVEVVIDPKDIELTSARSGGAG 288

Query: 283 GQNVNKVETAIDLFHKPTGIRIFCTEERTQLRNKHRALQLLRAKLYEIKLREQQESIRNE 342
           GQNVNKVETAIDLFHKP+GIRIFCTEERTQ+RNK RA QLLRAKLYEIK+REQQE IRNE
Sbjct: 289 GQNVNKVETAIDLFHKPSGIRIFCTEERTQIRNKARAFQLLRAKLYEIKVREQQEKIRNE 348

Query: 343 RKSQIGTGARAEKIRTYNYKDNRVTDHRLKMNFELTSFLDGDIENAVQSCVTTEQKQLLE 402
           RKSQ+GTGAR+EKIRTYNYKD+RVTDHRLKMNF LT+FLDG +E+AVQ+C   EQK+L+E
Sbjct: 349 RKSQVGTGARSEKIRTYNYKDSRVTDHRLKMNFALTTFLDGALEDAVQACAALEQKELME 408

Query: 403 ELAESANAPAS 413
           EL+ES  A ++
Sbjct: 409 ELSESVAASSA 419


>AT2G47020.1 | Symbols:  | Peptide chain release factor 1 |
           chr2:19320090-19322279 REVERSE LENGTH=413
          Length = 413

 Score =  207 bits (527), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 103/267 (38%), Positives = 156/267 (58%)

Query: 105 EKSLEETKALAKDDGNDEDMAEMISFEVDSLSRQXXXXXXXXXXXXXXXXXXXXRNIMIE 164
           +K ++  K+L  +  +D+DM ++   E+D    +                    R+ ++E
Sbjct: 108 QKEIDGLKSLVSESSDDKDMLDLAVGELDEAVEEEKRLQTLLLKSLLPKDEADERDCILE 167

Query: 165 VRAGTGGDEAGIWVGDLVRMYERYSERNSWKHSTISSSEAEKGGFKTFVMEIKGNCVYSK 224
           VRAGTGG+EA ++  D+ RMYERYS++  WK   +  +E++  G+K     I G  VY K
Sbjct: 168 VRAGTGGEEASLFAMDIFRMYERYSQKKGWKFDIVDITESDMKGYKEASAAICGASVYGK 227

Query: 225 LKYESGVHRVQRVPLTETQGRVHTSTATVAIMXXXXXXXXXXXXXXXXLTTARSGGAGGQ 284
           LK+ESG+HRVQR+P+TE  GR+HTS  +VAI+                + T RSGG+GGQ
Sbjct: 228 LKFESGIHRVQRIPITEKSGRIHTSAISVAILPQADEVDVQLRNEDLRIDTYRSGGSGGQ 287

Query: 285 NVNKVETAIDLFHKPTGIRIFCTEERTQLRNKHRALQLLRAKLYEIKLREQQESIRNERK 344
           + N   +A+ + H PTG+ +   +ER+Q  N+ +AL++L A+LYEI+    Q S    R 
Sbjct: 288 HANTTNSAVRIIHLPTGMMVSIQDERSQHMNRAKALKVLCARLYEIERLRIQSSRSKLRS 347

Query: 345 SQIGTGARAEKIRTYNYKDNRVTDHRL 371
            QIG+G R+ +IRTYN+   RVTDHR+
Sbjct: 348 DQIGSGDRSGRIRTYNFPQGRVTDHRV 374


>AT2G47020.2 | Symbols:  | Peptide chain release factor 1 |
           chr2:19320439-19322002 REVERSE LENGTH=256
          Length = 256

 Score =  156 bits (395), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 75/208 (36%), Positives = 117/208 (56%)

Query: 105 EKSLEETKALAKDDGNDEDMAEMISFEVDSLSRQXXXXXXXXXXXXXXXXXXXXRNIMIE 164
           +K ++  K+L  +  +D+DM ++   E+D    +                    R+ ++E
Sbjct: 43  QKEIDGLKSLVSESSDDKDMLDLAVGELDEAVEEEKRLQTLLLKSLLPKDEADERDCILE 102

Query: 165 VRAGTGGDEAGIWVGDLVRMYERYSERNSWKHSTISSSEAEKGGFKTFVMEIKGNCVYSK 224
           VRAGTGG+EA ++  D+ RMYERYS++  WK   +  +E++  G+K     I G  VY K
Sbjct: 103 VRAGTGGEEASLFAMDIFRMYERYSQKKGWKFDIVDITESDMKGYKEASAAICGASVYGK 162

Query: 225 LKYESGVHRVQRVPLTETQGRVHTSTATVAIMXXXXXXXXXXXXXXXXLTTARSGGAGGQ 284
           LK+ESG+HRVQR+P+TE  GR+HTS  +VAI+                + T RSGG+GGQ
Sbjct: 163 LKFESGIHRVQRIPITEKSGRIHTSAISVAILPQADEVDVQLRNEDLRIDTYRSGGSGGQ 222

Query: 285 NVNKVETAIDLFHKPTGIRIFCTEERTQ 312
           + N   +A+ + H PTG+ +   +ER+Q
Sbjct: 223 HANTTNSAVRIIHLPTGMMVSIQDERSQ 250


>AT5G36170.1 | Symbols: HCF109, ATPRFB | high chlorophyll
           fluorescent 109 | chr5:14236083-14237974 REVERSE
           LENGTH=456
          Length = 456

 Score =  132 bits (332), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 85/243 (34%), Positives = 127/243 (52%), Gaps = 19/243 (7%)

Query: 162 MIEVRAGTGGDEAGIWVGDLVRMYERYSERNSWKHSTISSSEAEKGGFKTFVMEIKGNCV 221
           ++ + AG GG +A  W   L+RMY R+ E+  +K   +  S  E+ G K+  +EI+G   
Sbjct: 208 VVYITAGAGGTDAQDWADMLLRMYMRWGEKQRYKTKVVEMSNGEEAGIKSATLEIEGRYA 267

Query: 222 YSKLKYESGVHRVQRVPLTETQGRVHTSTATVAIMXXXXXXXXXXXXXXXXLTTA--RSG 279
           Y  +  E G HR+ R     ++G   TS + V +M                L  +  R+G
Sbjct: 268 YGYISGEKGTHRIVRQSPFNSKGLRQTSFSGVEVMPLLPEEAVGIEIPEEDLDISFTRAG 327

Query: 280 GAGGQNVNKVETAIDLFHKPTGIRIFCTEERTQLRNKHRALQLLRAKLYEIKLREQQESI 339
           G GGQNVNKVETA+ + H PTG+ + CTEER+QL NK RAL  L+AKL  I   ++   I
Sbjct: 328 GKGGQNVNKVETAVRITHIPTGVAVRCTEERSQLANKTRALIRLKAKLMVIAEEQRATEI 387

Query: 340 RNERKSQIGTGARAE---KIRTYNY------KDNRVTDHRLKMNFELTSFLDGDIENAVQ 390
           +  R    G   +AE   +IR Y +      KD R T H      ++TS +DGD++  ++
Sbjct: 388 KEIR----GDAVKAEWGQQIRNYVFHPYKLVKDVR-TGHETS---DITSVMDGDLDPFIK 439

Query: 391 SCV 393
           + +
Sbjct: 440 AYL 442


>AT5G36170.2 | Symbols: HCF109, ATPRFB | high chlorophyll
           fluorescent 109 | chr5:14236083-14237974 REVERSE
           LENGTH=455
          Length = 455

 Score =  132 bits (332), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 85/243 (34%), Positives = 127/243 (52%), Gaps = 19/243 (7%)

Query: 162 MIEVRAGTGGDEAGIWVGDLVRMYERYSERNSWKHSTISSSEAEKGGFKTFVMEIKGNCV 221
           ++ + AG GG +A  W   L+RMY R+ E+  +K   +  S  E+ G K+  +EI+G   
Sbjct: 207 VVYITAGAGGTDAQDWADMLLRMYMRWGEKQRYKTKVVEMSNGEEAGIKSATLEIEGRYA 266

Query: 222 YSKLKYESGVHRVQRVPLTETQGRVHTSTATVAIMXXXXXXXXXXXXXXXXLTTA--RSG 279
           Y  +  E G HR+ R     ++G   TS + V +M                L  +  R+G
Sbjct: 267 YGYISGEKGTHRIVRQSPFNSKGLRQTSFSGVEVMPLLPEEAVGIEIPEEDLDISFTRAG 326

Query: 280 GAGGQNVNKVETAIDLFHKPTGIRIFCTEERTQLRNKHRALQLLRAKLYEIKLREQQESI 339
           G GGQNVNKVETA+ + H PTG+ + CTEER+QL NK RAL  L+AKL  I   ++   I
Sbjct: 327 GKGGQNVNKVETAVRITHIPTGVAVRCTEERSQLANKTRALIRLKAKLMVIAEEQRATEI 386

Query: 340 RNERKSQIGTGARAE---KIRTYNY------KDNRVTDHRLKMNFELTSFLDGDIENAVQ 390
           +  R    G   +AE   +IR Y +      KD R T H      ++TS +DGD++  ++
Sbjct: 387 KEIR----GDAVKAEWGQQIRNYVFHPYKLVKDVR-TGHETS---DITSVMDGDLDPFIK 438

Query: 391 SCV 393
           + +
Sbjct: 439 AYL 441


>AT1G56350.1 | Symbols:  | Peptide chain release factor 2 |
           chr1:21094840-21097826 FORWARD LENGTH=482
          Length = 482

 Score =  116 bits (290), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 125/238 (52%), Gaps = 7/238 (2%)

Query: 163 IEVRAGTGGDEAGIWVGDLVRMYERYSERNSWKHSTISSSEAEKGGFKTFVMEIKGNCVY 222
           IEV+AG GG E+  W   ++ MY+ +++R  +  + +  +  E  G K   +++ G   Y
Sbjct: 238 IEVQAGAGGTESNDWAAMVMEMYKTWAQRRKFSVTVVDEAPGEIAGIKRATIKVNGEYAY 297

Query: 223 SKLKYESGVHRVQRVPLTETQGRVHTSTATVAIMXXXXXXXXXXXXXXXXLTTA--RSGG 280
              K E GVHR+ R+   ++  R HTS A VA++                L     RSGG
Sbjct: 298 GYAKAEVGVHRLVRISPFDSGKRRHTSFAAVAVIPILGDGSTRVEINDSDLRIERFRSGG 357

Query: 281 AGGQNVNKVETAIDLFHKPTGIRIFCTEERTQLRNKHRALQLLRAKLYEIKLREQQESIR 340
           AGGQ+ N  ++A+ + H PTGI   C  ER+Q  NK  A+ +L+++L ++++  +Q ++ 
Sbjct: 358 AGGQHANTTDSAVRIVHIPTGITATCQNERSQHSNKASAMAVLQSRLDQLEM-ARQTAMN 416

Query: 341 NERKSQIGTGARAEKIRTYNYKDNRVTDHRLKMNFELT---SFLDGDIENAVQSCVTT 395
            +    +   +   +IRTY     R+    L+ N+E++   S L+GD++  + S +++
Sbjct: 417 AQHTQSLTEISWGNQIRTYVLHPYRMVKD-LRTNYEVSDPDSVLEGDLDGFILSFLSS 473


>AT5G36170.3 | Symbols: HCF109, ATPRFB | high chlorophyll
           fluorescent 109 | chr5:14236297-14237974 REVERSE
           LENGTH=391
          Length = 391

 Score = 98.6 bits (244), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 52/149 (34%), Positives = 78/149 (52%), Gaps = 2/149 (1%)

Query: 162 MIEVRAGTGGDEAGIWVGDLVRMYERYSERNSWKHSTISSSEAEKGGFKTFVMEIKGNCV 221
           ++ + AG GG +A  W   L+RMY R+ E+  +K   +  S  E+ G K+  +EI+G   
Sbjct: 208 VVYITAGAGGTDAQDWADMLLRMYMRWGEKQRYKTKVVEMSNGEEAGIKSATLEIEGRYA 267

Query: 222 YSKLKYESGVHRVQRVPLTETQGRVHTSTATVAIMXXXXXXXXXXXXXXXXLTTA--RSG 279
           Y  +  E G HR+ R     ++G   TS + V +M                L  +  R+G
Sbjct: 268 YGYISGEKGTHRIVRQSPFNSKGLRQTSFSGVEVMPLLPEEAVGIEIPEEDLDISFTRAG 327

Query: 280 GAGGQNVNKVETAIDLFHKPTGIRIFCTE 308
           G GGQNVNKVETA+ + H PTG+ + CT+
Sbjct: 328 GKGGQNVNKVETAVRITHIPTGVAVRCTD 356


>AT3G57190.1 | Symbols:  | peptide chain release factor, putative |
           chr3:21166468-21168198 FORWARD LENGTH=406
          Length = 406

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 103/225 (45%), Gaps = 14/225 (6%)

Query: 165 VRAGTGGDEAGIWVGDLVRMYERYSER--NSWKHSTISSSEAEKGGFKTFVMEIKGNCVY 222
           +++G+ G ++ IW   +V MY +++ER   + + +   S  + K G  +  +E +    Y
Sbjct: 175 IKSGSPGAKSQIWTEQVVSMYIKWAERLGQNARVAEKCSLLSNKSGVSSATIEFEFEFAY 234

Query: 223 SKLKYESGVHRVQRVPLTETQGRVHTSTATVAIMXXXXXXXXXXXXXXXXLTTARSGGAG 282
             L  E GVHR     L  +       +ATV I+                L  +      
Sbjct: 235 GYLLGERGVHR-----LIISSTSNEECSATVDIIPLFLRASPDFEVKEGDLIVSY---PA 286

Query: 283 GQNVNKVETAIDLFHKPTGIRIFCTEERTQLRNKHRALQLLRAKLYEIKLREQQESIRNE 342
            ++    E  + + H P+G+ +  + ER +  N+ +AL  L+AKL  I  +EQ+ S  N+
Sbjct: 287 KEDHKIAENMVCIHHIPSGVTLQSSGERNRFANRIKALNRLKAKLLVIA-KEQKVSDVNK 345

Query: 343 RKSQIGTGARAEKIRTYNYKDNR-VTDHRLKMN-FELTSFLDGDI 385
             S+     R E+ R+Y  K ++ V D +  +   +L S LDG+I
Sbjct: 346 IDSKNILEPR-EETRSYVSKGHKMVVDRKTGLEILDLKSVLDGNI 389