Miyakogusa Predicted Gene

Lj1g3v4916340.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4916340.1 tr|I3SXM3|I3SXM3_LOTJA Ribosomal protein L19
OS=Lotus japonicus PE=2 SV=1,99.32,0,Ribosomal protein L19
(L19e),Ribosomal protein L19/L19e; 60S RIBOSOMAL PROTEIN L19,NULL;
seg,NULL; R,CUFF.33583.1
         (147 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G16780.1 | Symbols:  | Ribosomal protein L19e family protein ...   164   2e-41
AT4G02230.1 | Symbols:  | Ribosomal protein L19e family protein ...   164   2e-41
AT1G02780.1 | Symbols: emb2386 | Ribosomal protein L19e family p...   163   4e-41
AT4G16030.1 | Symbols:  | Ribosomal protein L19e family protein ...    61   3e-10

>AT3G16780.1 | Symbols:  | Ribosomal protein L19e family protein |
           chr3:5708982-5710249 FORWARD LENGTH=209
          Length = 209

 Score =  164 bits (416), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 85/121 (70%), Positives = 88/121 (72%)

Query: 1   MKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYM 60
           + EAKRKGRHSGYGKRKGTREARLPTKI              KYRESKKID+HMYHDMYM
Sbjct: 66  LNEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMYHDMYM 125

Query: 61  KVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNXXXXXXXXXXXXXXXXQGP 120
           KVKGNVFKNKRVLMESIHK KAEKAREKTL+DQFEAKR KN                QGP
Sbjct: 126 KVKGNVFKNKRVLMESIHKMKAEKAREKTLADQFEAKRIKNKASRERKFARREERLAQGP 185

Query: 121 G 121
           G
Sbjct: 186 G 186


>AT4G02230.1 | Symbols:  | Ribosomal protein L19e family protein |
           chr4:979391-980640 REVERSE LENGTH=208
          Length = 208

 Score =  164 bits (414), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 84/118 (71%), Positives = 88/118 (74%)

Query: 4   AKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVK 63
           AKRKGRHSGYGKRKGTREARLPTK+              KYRE+KKID+HMYHDMYMKVK
Sbjct: 69  AKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMYHDMYMKVK 128

Query: 64  GNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNXXXXXXXXXXXXXXXXQGPG 121
           GNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKN                +GPG
Sbjct: 129 GNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREERLAKGPG 186


>AT1G02780.1 | Symbols: emb2386 | Ribosomal protein L19e family
           protein | chr1:608120-609391 REVERSE LENGTH=214
          Length = 214

 Score =  163 bits (412), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 85/121 (70%), Positives = 89/121 (73%)

Query: 1   MKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYM 60
           MK AK KGRHSGYGKRKGTREARLPTK+              KYRE+KKIDKHMYHDMYM
Sbjct: 66  MKIAKMKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMYHDMYM 125

Query: 61  KVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNXXXXXXXXXXXXXXXXQGP 120
           +VKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKN                +GP
Sbjct: 126 RVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREERLAKGP 185

Query: 121 G 121
           G
Sbjct: 186 G 186


>AT4G16030.1 | Symbols:  | Ribosomal protein L19e family protein |
          chr4:9083482-9084103 FORWARD LENGTH=114
          Length = 114

 Score = 60.8 bits (146), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/82 (48%), Positives = 49/82 (59%), Gaps = 3/82 (3%)

Query: 4  AKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMY-HDMYMKV 62
          A+RK RH+GYGK   T EA                    K+  +KKIDK +Y HDM+MKV
Sbjct: 12 ARRKCRHTGYGK--DTMEALRRIMKRLTRRLKMLKRLLKKFCWNKKIDKLVYYHDMFMKV 69

Query: 63 KGNVFKNKRVLMESIHKSKAEK 84
          KG V+KNK VLMES+HKS  E+
Sbjct: 70 KGKVYKNKCVLMESMHKSSRER 91