Miyakogusa Predicted Gene

Lj1g3v4915280.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4915280.2 tr|G7KRT5|G7KRT5_MEDTR LUMINIDEPENDENS-like
protein OS=Medicago truncatula GN=MTR_7g108390 PE=3
SV=1,72.63,0,Homeodomain,Homeodomain; no description,Homeodomain-like;
Homeodomain-like,Homeodomain-like; Conserv,CUFF.33574.2
         (754 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G02560.2 | Symbols: LD | Homeodomain-like superfamily protein...   458   e-129
AT4G02560.1 | Symbols: LD | Homeodomain-like superfamily protein...   458   e-129
AT1G19860.1 | Symbols:  | Zinc finger C-x8-C-x5-C-x3-H type fami...    50   4e-06

>AT4G02560.2 | Symbols: LD | Homeodomain-like superfamily protein |
           chr4:1123656-1128252 REVERSE LENGTH=953
          Length = 953

 Score =  458 bits (1178), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 252/454 (55%), Positives = 319/454 (70%), Gaps = 29/454 (6%)

Query: 10  QLEIGTTVDSLQSFLASQRELFQSQIDQFQHIVVTQCNLTGVNPLSQEMAAGALSIKIGK 69
           ++EIG++V+SL   L SQ+ LF SQIDQ Q +VV QC LTGVNPL+QEMAAGALSIKIGK
Sbjct: 7   EIEIGSSVESLMELLDSQKVLFHSQIDQLQDVVVAQCKLTGVNPLAQEMAAGALSIKIGK 66

Query: 70  RPRDLLNPKAVNYMQSVFSIKDAISKKESREISAMFGVTVTQVRDFFTSQRSRVRRLVQL 129
           RPRDLLNPKAV Y+Q+VF+IKDAISK+ESREISA+FG+TV QVR+FF +Q++RVR+ V+L
Sbjct: 67  RPRDLLNPKAVKYLQAVFAIKDAISKRESREISALFGITVAQVREFFVTQKTRVRKQVRL 126

Query: 130 SKQRALRSSSCEEPHGEQIN--------SDHVRPINPPLLDTAGSTNAEETSCSTQEA-- 179
           S+++ + S++    H  Q +        ++HV P+  PL     S + E  S S  E   
Sbjct: 127 SREKVVMSNT----HALQDDGVPENNNATNHVEPV--PL----NSIHPEACSISWGEGET 176

Query: 180 -AL-------SDLDDSDKHFVENIFSLIQKEETFSGQEKLMEWILTIQNFSVLSWFLTKG 231
            AL        D+ DSDK+FVENIFSL++KEETFSGQ KLMEWI+ IQ+ SVL WFL+KG
Sbjct: 177 VALIPPEDIPPDISDSDKYFVENIFSLLRKEETFSGQVKLMEWIMQIQDASVLIWFLSKG 236

Query: 232 GAMSLATWLNKAAVEEQTSVXXXXXXXXXXXXXHKALPAHISAILQSVNGLRFYRTQDIS 291
           G + L TWL++AA EEQTSV             HKA P ++SAILQSVNGLRFYR  DIS
Sbjct: 237 GVLILTTWLSQAASEEQTSVLLLILKVLCHLPLHKASPENMSAILQSVNGLRFYRISDIS 296

Query: 292 NRARVLLSKWSKLLARNQALKKPNGVKTSGEKQMMLSHRQASESWHSNIDLPEDILAPSN 351
           NRA+ LLS+W+KL A+ QA+KK N   +  + Q  L  +Q+      +   PEDIL+ SN
Sbjct: 297 NRAKGLLSRWTKLFAKIQAMKKQNRNSSQIDSQSQLLLKQSIAEIMGDSSNPEDILSLSN 356

Query: 352 EYSDNFRKLEPLQALKLLPPS-DDSHKKPTLGVSSSHARERRKVQLVEQPGQKSVSRSPQ 410
             S+N R++E  Q  KLL  S DDS KK  LG + S+ +ERRKVQ+VEQPGQK+  +SPQ
Sbjct: 357 GKSENVRRIESSQGPKLLLTSADDSTKKHMLGSNPSYNKERRKVQMVEQPGQKAAGKSPQ 416

Query: 411 VARVAPVSQSRPMSADDIQKAKLRASFMQSKYGK 444
             R+    +SRPMSADDIQKAK+RA +MQSK  K
Sbjct: 417 TVRIGTSGRSRPMSADDIQKAKMRALYMQSKNSK 450



 Score =  138 bits (348), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 92/238 (38%), Positives = 133/238 (55%), Gaps = 16/238 (6%)

Query: 474 SKVHVPPKIEEDKKPPVLPSKNTIRLDASYSKLKMDLKESPWEKCKRVQIPWKTPAEVKL 533
           S V VP + +E KKP   P   + ++      +KM   ++  + CKR QI W  P  ++L
Sbjct: 540 SAVIVPVQADEIKKPSTPPKSISSKVGV---MMKMS-SQTILKNCKRKQIDWHVPPGMEL 595

Query: 534 NDTWKVGNGENSKEVDVQTNRHRREKDTIYQTIKEMPSNPKEPWDLEMDYDDTLTPEIPI 593
           ++ W+V  G NSKE DVQ NR+RRE++T YQ+++ +P NPKEPWD EMDYDD+LTPEIP 
Sbjct: 596 DELWRVAAGGNSKEADVQRNRNRRERETTYQSLQTIPLNPKEPWDREMDYDDSLTPEIPS 655

Query: 594 EQLPDGDSAEVVATPNDVATHAVQSVASTSSTGNXXXXXXXXXXXXXXXKNPELVFALTS 653
           +Q P+    E +  P D       +  + +++ +               KNP+LV+ALTS
Sbjct: 656 QQPPE----ESLTEPQDSLDERRIAAGAATTSSSLSSPEPDLELLAALLKNPDLVYALTS 711

Query: 654 GQAGNIPNEETMKLLDMIKRSSVXXXXXXXXXXXXXXXAKSPETVEVSLPSPTPSNDP 711
           G+  N+  ++ +KLLD+IK  +                    E VEVSLPSPTPS +P
Sbjct: 712 GKPSNLAGQDMVKLLDVIKTGAPNSSSSSNKQVE--------ERVEVSLPSPTPSTNP 761


>AT4G02560.1 | Symbols: LD | Homeodomain-like superfamily protein |
           chr4:1123656-1128252 REVERSE LENGTH=953
          Length = 953

 Score =  458 bits (1178), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 252/454 (55%), Positives = 319/454 (70%), Gaps = 29/454 (6%)

Query: 10  QLEIGTTVDSLQSFLASQRELFQSQIDQFQHIVVTQCNLTGVNPLSQEMAAGALSIKIGK 69
           ++EIG++V+SL   L SQ+ LF SQIDQ Q +VV QC LTGVNPL+QEMAAGALSIKIGK
Sbjct: 7   EIEIGSSVESLMELLDSQKVLFHSQIDQLQDVVVAQCKLTGVNPLAQEMAAGALSIKIGK 66

Query: 70  RPRDLLNPKAVNYMQSVFSIKDAISKKESREISAMFGVTVTQVRDFFTSQRSRVRRLVQL 129
           RPRDLLNPKAV Y+Q+VF+IKDAISK+ESREISA+FG+TV QVR+FF +Q++RVR+ V+L
Sbjct: 67  RPRDLLNPKAVKYLQAVFAIKDAISKRESREISALFGITVAQVREFFVTQKTRVRKQVRL 126

Query: 130 SKQRALRSSSCEEPHGEQIN--------SDHVRPINPPLLDTAGSTNAEETSCSTQEA-- 179
           S+++ + S++    H  Q +        ++HV P+  PL     S + E  S S  E   
Sbjct: 127 SREKVVMSNT----HALQDDGVPENNNATNHVEPV--PL----NSIHPEACSISWGEGET 176

Query: 180 -AL-------SDLDDSDKHFVENIFSLIQKEETFSGQEKLMEWILTIQNFSVLSWFLTKG 231
            AL        D+ DSDK+FVENIFSL++KEETFSGQ KLMEWI+ IQ+ SVL WFL+KG
Sbjct: 177 VALIPPEDIPPDISDSDKYFVENIFSLLRKEETFSGQVKLMEWIMQIQDASVLIWFLSKG 236

Query: 232 GAMSLATWLNKAAVEEQTSVXXXXXXXXXXXXXHKALPAHISAILQSVNGLRFYRTQDIS 291
           G + L TWL++AA EEQTSV             HKA P ++SAILQSVNGLRFYR  DIS
Sbjct: 237 GVLILTTWLSQAASEEQTSVLLLILKVLCHLPLHKASPENMSAILQSVNGLRFYRISDIS 296

Query: 292 NRARVLLSKWSKLLARNQALKKPNGVKTSGEKQMMLSHRQASESWHSNIDLPEDILAPSN 351
           NRA+ LLS+W+KL A+ QA+KK N   +  + Q  L  +Q+      +   PEDIL+ SN
Sbjct: 297 NRAKGLLSRWTKLFAKIQAMKKQNRNSSQIDSQSQLLLKQSIAEIMGDSSNPEDILSLSN 356

Query: 352 EYSDNFRKLEPLQALKLLPPS-DDSHKKPTLGVSSSHARERRKVQLVEQPGQKSVSRSPQ 410
             S+N R++E  Q  KLL  S DDS KK  LG + S+ +ERRKVQ+VEQPGQK+  +SPQ
Sbjct: 357 GKSENVRRIESSQGPKLLLTSADDSTKKHMLGSNPSYNKERRKVQMVEQPGQKAAGKSPQ 416

Query: 411 VARVAPVSQSRPMSADDIQKAKLRASFMQSKYGK 444
             R+    +SRPMSADDIQKAK+RA +MQSK  K
Sbjct: 417 TVRIGTSGRSRPMSADDIQKAKMRALYMQSKNSK 450



 Score =  138 bits (348), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 92/238 (38%), Positives = 133/238 (55%), Gaps = 16/238 (6%)

Query: 474 SKVHVPPKIEEDKKPPVLPSKNTIRLDASYSKLKMDLKESPWEKCKRVQIPWKTPAEVKL 533
           S V VP + +E KKP   P   + ++      +KM   ++  + CKR QI W  P  ++L
Sbjct: 540 SAVIVPVQADEIKKPSTPPKSISSKVGV---MMKMS-SQTILKNCKRKQIDWHVPPGMEL 595

Query: 534 NDTWKVGNGENSKEVDVQTNRHRREKDTIYQTIKEMPSNPKEPWDLEMDYDDTLTPEIPI 593
           ++ W+V  G NSKE DVQ NR+RRE++T YQ+++ +P NPKEPWD EMDYDD+LTPEIP 
Sbjct: 596 DELWRVAAGGNSKEADVQRNRNRRERETTYQSLQTIPLNPKEPWDREMDYDDSLTPEIPS 655

Query: 594 EQLPDGDSAEVVATPNDVATHAVQSVASTSSTGNXXXXXXXXXXXXXXXKNPELVFALTS 653
           +Q P+    E +  P D       +  + +++ +               KNP+LV+ALTS
Sbjct: 656 QQPPE----ESLTEPQDSLDERRIAAGAATTSSSLSSPEPDLELLAALLKNPDLVYALTS 711

Query: 654 GQAGNIPNEETMKLLDMIKRSSVXXXXXXXXXXXXXXXAKSPETVEVSLPSPTPSNDP 711
           G+  N+  ++ +KLLD+IK  +                    E VEVSLPSPTPS +P
Sbjct: 712 GKPSNLAGQDMVKLLDVIKTGAPNSSSSSNKQVE--------ERVEVSLPSPTPSTNP 761


>AT1G19860.1 | Symbols:  | Zinc finger C-x8-C-x5-C-x3-H type family
           protein | chr1:6891654-6894400 REVERSE LENGTH=413
          Length = 413

 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 41/81 (50%), Gaps = 1/81 (1%)

Query: 523 IPWKTPAEVKLNDTWKVGNGENSKEVDVQTNRHRREKDTIYQTIKEMPSNPKEPWDLE-M 581
           I WK   ++ L+  WKV  G+ SKEV+ Q  R  R  +  Y     +P NP  P D+E  
Sbjct: 77  IKWKCSVQILLDREWKVVAGDESKEVEAQNERELRVLEAFYPGASSIPPNPSVPADVEDS 136

Query: 582 DYDDTLTPEIPIEQLPDGDSA 602
            +DD  T  IPI  + D D A
Sbjct: 137 HHDDQQTIVIPILPVEDDDIA 157