Miyakogusa Predicted Gene

Lj1g3v4898000.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4898000.1 CUFF.33628.1
         (228 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G02450.2 | Symbols:  | HSP20-like chaperones superfamily prot...   127   7e-30
AT4G02450.1 | Symbols:  | HSP20-like chaperones superfamily prot...   127   7e-30
AT3G03773.1 | Symbols:  | HSP20-like chaperones superfamily prot...   103   1e-22
AT3G03773.2 | Symbols:  | HSP20-like chaperones superfamily prot...   102   3e-22

>AT4G02450.2 | Symbols:  | HSP20-like chaperones superfamily protein
           | chr4:1073987-1075765 REVERSE LENGTH=240
          Length = 240

 Score =  127 bits (318), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 61/99 (61%), Positives = 77/99 (77%), Gaps = 1/99 (1%)

Query: 4   SRHPEVKWAQREDKVYITVQLPDSKDAKVDLTPDGVFTFTASAGAGDKPYEVKLELFDKV 63
           SRHPEVKWA+  +K+++TV L D+KD KV+L P+GVF F+A  G  +  YE+KLEL DKV
Sbjct: 2   SRHPEVKWAETTEKIFLTVVLADTKDTKVNLDPEGVFDFSAKVGPENHVYELKLELADKV 61

Query: 64  NVEESKINIGVRSIFSVVQKAESGWWKRLLRGEGKPPHY 102
           NVEESKINIG RSIF +++KAE   W +LLR + KPPHY
Sbjct: 62  NVEESKINIGERSIFCIIEKAEPERWNKLLRVK-KPPHY 99


>AT4G02450.1 | Symbols:  | HSP20-like chaperones superfamily protein
           | chr4:1073987-1075765 REVERSE LENGTH=241
          Length = 241

 Score =  127 bits (318), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 61/99 (61%), Positives = 77/99 (77%), Gaps = 1/99 (1%)

Query: 4   SRHPEVKWAQREDKVYITVQLPDSKDAKVDLTPDGVFTFTASAGAGDKPYEVKLELFDKV 63
           SRHPEVKWA+  +K+++TV L D+KD KV+L P+GVF F+A  G  +  YE+KLEL DKV
Sbjct: 2   SRHPEVKWAETTEKIFLTVVLADTKDTKVNLDPEGVFDFSAKVGPENHVYELKLELADKV 61

Query: 64  NVEESKINIGVRSIFSVVQKAESGWWKRLLRGEGKPPHY 102
           NVEESKINIG RSIF +++KAE   W +LLR + KPPHY
Sbjct: 62  NVEESKINIGERSIFCIIEKAEPERWNKLLRVK-KPPHY 99


>AT3G03773.1 | Symbols:  | HSP20-like chaperones superfamily protein
           | chr3:951885-953490 FORWARD LENGTH=150
          Length = 150

 Score =  103 bits (257), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 50/99 (50%), Positives = 66/99 (66%), Gaps = 2/99 (2%)

Query: 4   SRHPEVKWAQREDKVYITVQLPDSKDAKVDLTPDGVFTFTASAGAGDKPYEVKLELFDKV 63
           SR+PEV WAQR DKVY+TV LPD+KD  V   P G+F+F+A    G++ +E  LEL+ K+
Sbjct: 2   SRNPEVLWAQRSDKVYLTVALPDAKDISVKCEPQGLFSFSALGAQGER-FEFSLELYGKI 60

Query: 64  NVEESKINIGVRSIFSVVQKAESGWWKRLLRGEGKPPHY 102
             E  K N+G+R+I   +QK E  WW RLL+ E KP  Y
Sbjct: 61  MTEYRK-NVGLRNIIFSIQKEERSWWTRLLKSEEKPAPY 98


>AT3G03773.2 | Symbols:  | HSP20-like chaperones superfamily protein
           | chr3:951628-953490 FORWARD LENGTH=204
          Length = 204

 Score =  102 bits (253), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 49/98 (50%), Positives = 65/98 (66%), Gaps = 2/98 (2%)

Query: 5   RHPEVKWAQREDKVYITVQLPDSKDAKVDLTPDGVFTFTASAGAGDKPYEVKLELFDKVN 64
           R+PEV WAQR DKVY+TV LPD+KD  V   P G+F+F+A    G++ +E  LEL+ K+ 
Sbjct: 57  RNPEVLWAQRSDKVYLTVALPDAKDISVKCEPQGLFSFSALGAQGER-FEFSLELYGKIM 115

Query: 65  VEESKINIGVRSIFSVVQKAESGWWKRLLRGEGKPPHY 102
            E  K N+G+R+I   +QK E  WW RLL+ E KP  Y
Sbjct: 116 TEYRK-NVGLRNIIFSIQKEERSWWTRLLKSEEKPAPY 152