Miyakogusa Predicted Gene

Lj1g3v4897990.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4897990.1 Non Chatacterized Hit- tr|J3LXM1|J3LXM1_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB04G1,69.44,3e-19,2FE2S_FER_2,2Fe-2S ferredoxin-type domain;
fdx_plant: ferredoxin [2Fe-2S],Ferredoxin [2Fe-2S], plant,CUFF.33575.1
         (152 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G27510.1 | Symbols: ATFD3, FD3 | ferredoxin 3 | chr2:11758281...   158   1e-39
AT1G60950.1 | Symbols: FED A, ATFD2 | 2Fe-2S ferredoxin-like sup...   123   4e-29
AT5G10000.1 | Symbols: ATFD4, FD4 | ferredoxin 4 | chr5:3126709-...   114   3e-26
AT1G10960.1 | Symbols: ATFD1, FD1 | ferredoxin 1 | chr1:3664445-...   113   5e-26
AT4G14890.1 | Symbols: FdC2 | 2Fe-2S ferredoxin-like superfamily...    74   3e-14
AT1G32550.1 | Symbols: FdC1 | 2Fe-2S ferredoxin-like superfamily...    73   7e-14
AT1G32550.2 | Symbols: FdC1 | 2Fe-2S ferredoxin-like superfamily...    54   4e-08

>AT2G27510.1 | Symbols: ATFD3, FD3 | ferredoxin 3 |
           chr2:11758281-11758748 REVERSE LENGTH=155
          Length = 155

 Score =  158 bits (400), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 78/123 (63%), Positives = 90/123 (73%), Gaps = 2/123 (1%)

Query: 32  SLGSVKNVSKAFALKSSSFRVCAM--AAYKVKLIGPDGAESEFEAPDDSYILDAAENAGV 89
           S+GS K VS++F LK S+    A   A YKVKL+GPDG E EFE  DD YILDAAE AGV
Sbjct: 33  SVGSTKRVSRSFGLKCSANSGGATMSAVYKVKLLGPDGQEDEFEVQDDQYILDAAEEAGV 92

Query: 90  DLPYSCRAGACSTCAGQLVSGXXXXXXXXXXXXXXVEKGYLLTCVSYPKSDCVIYTHKEE 149
           DLPYSCRAGACSTCAGQ+VSG              +EKGY+LTCV+YP+SDCVI+THKE 
Sbjct: 93  DLPYSCRAGACSTCAGQIVSGNVDQSDGSFLEDSHLEKGYVLTCVAYPQSDCVIHTHKET 152

Query: 150 ELY 152
           EL+
Sbjct: 153 ELF 155


>AT1G60950.1 | Symbols: FED A, ATFD2 | 2Fe-2S ferredoxin-like
           superfamily protein | chr1:22444565-22445011 FORWARD
           LENGTH=148
          Length = 148

 Score =  123 bits (309), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 71/141 (50%), Positives = 88/141 (62%), Gaps = 6/141 (4%)

Query: 14  LPGTAHTRRSCAFTKSASSLGSVKNVSKAFALKSSSFR---VCAMAAYKVKLIGPDGAES 70
           + GT+  RRS A   S  SL S  N    F LKS + R   V AMA YKVK I P+G E 
Sbjct: 10  IVGTSFIRRSPA-PISLRSLPSA-NTQSLFGLKSGTARGGRVTAMATYKVKFITPEG-EL 66

Query: 71  EFEAPDDSYILDAAENAGVDLPYSCRAGACSTCAGQLVSGXXXXXXXXXXXXXXVEKGYL 130
           E E  DD Y+LDAAE AG+DLPYSCRAG+CS+CAG++VSG              + +G++
Sbjct: 67  EVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDEQIGEGFV 126

Query: 131 LTCVSYPKSDCVIYTHKEEEL 151
           LTC +YP SD  I THKEE++
Sbjct: 127 LTCAAYPTSDVTIETHKEEDI 147


>AT5G10000.1 | Symbols: ATFD4, FD4 | ferredoxin 4 |
           chr5:3126709-3127155 FORWARD LENGTH=148
          Length = 148

 Score =  114 bits (284), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 58/126 (46%), Positives = 80/126 (63%), Gaps = 3/126 (2%)

Query: 29  SASSLGSVKNVSKAFALKSS--SF-RVCAMAAYKVKLIGPDGAESEFEAPDDSYILDAAE 85
           S + L +  N +  F L SS  +F +V A  + KVKLI P+G E E E  +D  IL++AE
Sbjct: 22  SQAQLTTRLNNTTYFGLSSSRGNFGKVFAKESRKVKLISPEGEEQEIEGNEDCCILESAE 81

Query: 86  NAGVDLPYSCRAGACSTCAGQLVSGXXXXXXXXXXXXXXVEKGYLLTCVSYPKSDCVIYT 145
           NAG++LPYSCR+G C TC G+LVSG              ++KGY+LTC++ P  DCV+YT
Sbjct: 82  NAGLELPYSCRSGTCGTCCGKLVSGKVDQSLGSFLEEEQIQKGYILTCIALPLEDCVVYT 141

Query: 146 HKEEEL 151
           HK+ +L
Sbjct: 142 HKQSDL 147


>AT1G10960.1 | Symbols: ATFD1, FD1 | ferredoxin 1 |
           chr1:3664445-3664891 FORWARD LENGTH=148
          Length = 148

 Score =  113 bits (282), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 62/117 (52%), Positives = 77/117 (65%), Gaps = 4/117 (3%)

Query: 38  NVSKAFALKSSSFR---VCAMAAYKVKLIGPDGAESEFEAPDDSYILDAAENAGVDLPYS 94
           N    F LKSS+ R   V AMA YKVK I P+G +   E  +D Y+LDAAE AG+DLPYS
Sbjct: 32  NTQSLFGLKSSTARGGRVTAMATYKVKFITPEGEQEV-ECEEDVYVLDAAEEAGLDLPYS 90

Query: 95  CRAGACSTCAGQLVSGXXXXXXXXXXXXXXVEKGYLLTCVSYPKSDCVIYTHKEEEL 151
           CRAG+CS+CAG++VSG              + +GY+LTCV+YP SD VI THKEE +
Sbjct: 91  CRAGSCSSCAGKVVSGSIDQSDQSFLDDEQMSEGYVLTCVAYPTSDVVIETHKEEAI 147


>AT4G14890.1 | Symbols: FdC2 | 2Fe-2S ferredoxin-like superfamily
           protein | chr4:8520887-8521351 FORWARD LENGTH=154
          Length = 154

 Score = 74.3 bits (181), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 41/95 (43%), Positives = 51/95 (53%), Gaps = 2/95 (2%)

Query: 57  AYKVKLIGPDGAESEFEAPDDSYILDAAENAGVDLPYSCRAGACSTCAGQLVSGXXXXXX 116
           AYKV ++  DG  +E E   D  IL  A ++G+D+PY C  G C TC  +LV+G      
Sbjct: 52  AYKV-VVEHDGKTTELEVEPDETILSKALDSGLDVPYDCNLGVCMTCPAKLVTG-TVDQS 109

Query: 117 XXXXXXXXVEKGYLLTCVSYPKSDCVIYTHKEEEL 151
                   VE+GY L C SYP SDC I    EEEL
Sbjct: 110 GGMLSDDVVERGYTLLCASYPTSDCHIKMIPEEEL 144


>AT1G32550.1 | Symbols: FdC1 | 2Fe-2S ferredoxin-like superfamily
           protein | chr1:11771969-11774117 REVERSE LENGTH=181
          Length = 181

 Score = 73.2 bits (178), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 48/86 (55%)

Query: 67  GAESEFEAPDDSYILDAAENAGVDLPYSCRAGACSTCAGQLVSGXXXXXXXXXXXXXXVE 126
           G   EFE P+D YIL +AE+  + LP++CR G C++CA ++ SG                
Sbjct: 69  GVVHEFEVPEDQYILHSAESQNISLPFACRHGCCTSCAVRVKSGELRQPQALGISAELKS 128

Query: 127 KGYLLTCVSYPKSDCVIYTHKEEELY 152
           +GY L CV +P SD  + T  E+E+Y
Sbjct: 129 QGYALLCVGFPTSDLEVETQDEDEVY 154


>AT1G32550.2 | Symbols: FdC1 | 2Fe-2S ferredoxin-like superfamily
           protein | chr1:11771969-11774117 REVERSE LENGTH=194
          Length = 194

 Score = 53.9 bits (128), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 46/102 (45%), Gaps = 19/102 (18%)

Query: 67  GAESEFEAPDDSYILDAAENAGVDLPYSCRAGACSTCAGQLVSGXXXXXXXXXXXXXXVE 126
           G   EFE   D YIL +AE+  + LP++CR G C++CA ++ SG                
Sbjct: 69  GVVHEFE---DQYILHSAESQNISLPFACRHGCCTSCAVRVKSGELRQPQALGISAELKS 125

Query: 127 K----------------GYLLTCVSYPKSDCVIYTHKEEELY 152
           +                GY L CV +P SD  + T  E+E+Y
Sbjct: 126 QRISSLDLIQCQKTYLTGYALLCVGFPTSDLEVETQDEDEVY 167