Miyakogusa Predicted Gene
- Lj1g3v4885920.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v4885920.1 tr|G7LBZ8|G7LBZ8_MEDTR Pre-mRNA-splicing factor
SF2 OS=Medicago truncatula GN=MTR_8g058530 PE=4 SV=1,89.68,0,seg,NULL;
RNA-binding domain, RBD,NULL; RNA recognition motif,RNA recognition
motif domain; RRM_1,RN,CUFF.33534.1
(315 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G02840.3 | Symbols: SR1, ATSRP34, SRP34, SR34, At-SR34 | RNA-... 269 2e-72
AT1G02840.1 | Symbols: SR1, ATSRP34, SRP34, SR34, At-SR34 | RNA-... 269 2e-72
AT1G02840.2 | Symbols: SR1, ATSRP34, SRP34, SR34, At-SR34 | RNA-... 267 7e-72
AT4G02430.2 | Symbols: SR34b, At-SR34b | RNA-binding (RRM/RBD/RN... 253 1e-67
AT1G09140.1 | Symbols: ATSRP30, SR30, At-SR30 | SERINE-ARGININE ... 249 2e-66
AT1G09140.2 | Symbols: ATSRP30, SR30, At-SR30 | SERINE-ARGININE ... 248 3e-66
AT3G49430.3 | Symbols: SRp34a, SR34a, At-SR34a | SER/ARG-rich pr... 237 1e-62
AT3G49430.1 | Symbols: SRp34a, SR34a, At-SR34a | SER/ARG-rich pr... 237 1e-62
AT3G49430.2 | Symbols: SRp34a, SR34a, At-SR34a | SER/ARG-rich pr... 236 1e-62
AT4G02430.1 | Symbols: SR34b, At-SR34b | RNA-binding (RRM/RBD/RN... 232 3e-61
AT4G25500.4 | Symbols: RSP35, RS40, At-RS40 | arginine/serine-ri... 64 2e-10
AT4G25500.1 | Symbols: ATRSP35, ATRSP40, AT-SRP40, RSP35, RS40, ... 64 2e-10
AT5G52040.2 | Symbols: ATRSP41, RS41, At-RS41 | RNA-binding (RRM... 62 4e-10
AT5G52040.1 | Symbols: ATRSP41, RS41, At-RS41 | RNA-binding (RRM... 62 4e-10
AT2G24590.1 | Symbols: RSZ22a, At-RSZ22a | RNA recognition motif... 62 4e-10
AT3G61860.1 | Symbols: ATRSP31, RSP31, At-RS31, RS31 | RNA-bindi... 62 5e-10
AT4G31580.2 | Symbols: SRZ-22, SRZ22, RSZP22, RSZ22, At-RSZ22 | ... 62 7e-10
AT4G31580.1 | Symbols: SRZ-22, SRZ22, RSZP22, RSZ22, At-RSZ22 | ... 62 7e-10
AT3G53500.2 | Symbols: RSZ32, RS2Z32, At-RS2Z | RNA-binding (RRM... 60 2e-09
AT2G37340.1 | Symbols: RSZ33, ATRSZ33, RS2Z33, AT-RS2Z33 | argin... 60 2e-09
AT2G46610.1 | Symbols: RS31a, At-RS31a | RNA-binding (RRM/RBD/RN... 59 4e-09
AT1G23860.3 | Symbols: SRZ-21, SRZ21, RSZ21, At-RSZ21 | RS-conta... 59 6e-09
AT1G23860.2 | Symbols: SRZ-21, SRZ21, RSZ21, At-RSZ21 | RS-conta... 58 8e-09
AT1G23860.1 | Symbols: SRZ-21, SRZ21, RSZP21, RSZ21, At-RSZ21 | ... 58 8e-09
AT1G23860.4 | Symbols: RSZP21, RSZ21, At-RSZ21 | RS-containing z... 58 8e-09
AT4G12640.1 | Symbols: | RNA recognition motif (RRM)-containing... 57 2e-08
AT1G73530.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 2e-06
AT5G12190.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 2e-06
AT3G11400.2 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation... 49 6e-06
AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 48 7e-06
AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RN... 48 7e-06
AT3G11400.1 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation... 48 8e-06
AT3G52660.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 48 1e-05
AT3G52660.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 48 1e-05
>AT1G02840.3 | Symbols: SR1, ATSRP34, SRP34, SR34, At-SR34 |
RNA-binding (RRM/RBD/RNP motifs) family protein |
chr1:626918-629583 FORWARD LENGTH=303
Length = 303
Score = 269 bits (688), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 134/195 (68%), Positives = 147/195 (75%), Gaps = 8/195 (4%)
Query: 1 MSRRTSRTVYVGNLPGDIREREVEDLFYKYGNITHIDLKVPPRPPGYAFVEFEDTQDAED 60
MS R+SRTVYVGNLPGDIREREVEDLF KYG + IDLKVPPRPPGYAFVEF+D +DAED
Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60
Query: 61 AIRGRDGYDFDGHRLRVELAH--------XXXXXXXXXXXXXXXXXXXXXXXXXXXXEYR 112
AI GRDGYDFDGHRLRVELAH E+R
Sbjct: 61 AIHGRDGYDFDGHRLRVELAHGGRRSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEFR 120
Query: 113 VLVSGLPSSASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNHDDMKYAVKKLDDSE 172
VLV+GLPSSASWQDLKDHMRK GDVCFSQV+ D RGTTG+VDYT ++DMKYA+KKLDD+E
Sbjct: 121 VLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDTE 180
Query: 173 FRNAFSRGYVRVRQY 187
FRNAFS GYVRVR+Y
Sbjct: 181 FRNAFSNGYVRVREY 195
>AT1G02840.1 | Symbols: SR1, ATSRP34, SRP34, SR34, At-SR34 |
RNA-binding (RRM/RBD/RNP motifs) family protein |
chr1:626918-629583 FORWARD LENGTH=303
Length = 303
Score = 269 bits (688), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 134/195 (68%), Positives = 147/195 (75%), Gaps = 8/195 (4%)
Query: 1 MSRRTSRTVYVGNLPGDIREREVEDLFYKYGNITHIDLKVPPRPPGYAFVEFEDTQDAED 60
MS R+SRTVYVGNLPGDIREREVEDLF KYG + IDLKVPPRPPGYAFVEF+D +DAED
Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60
Query: 61 AIRGRDGYDFDGHRLRVELAH--------XXXXXXXXXXXXXXXXXXXXXXXXXXXXEYR 112
AI GRDGYDFDGHRLRVELAH E+R
Sbjct: 61 AIHGRDGYDFDGHRLRVELAHGGRRSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEFR 120
Query: 113 VLVSGLPSSASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNHDDMKYAVKKLDDSE 172
VLV+GLPSSASWQDLKDHMRK GDVCFSQV+ D RGTTG+VDYT ++DMKYA+KKLDD+E
Sbjct: 121 VLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDTE 180
Query: 173 FRNAFSRGYVRVRQY 187
FRNAFS GYVRVR+Y
Sbjct: 181 FRNAFSNGYVRVREY 195
>AT1G02840.2 | Symbols: SR1, ATSRP34, SRP34, SR34, At-SR34 |
RNA-binding (RRM/RBD/RNP motifs) family protein |
chr1:626918-628995 FORWARD LENGTH=285
Length = 285
Score = 267 bits (683), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 134/195 (68%), Positives = 147/195 (75%), Gaps = 8/195 (4%)
Query: 1 MSRRTSRTVYVGNLPGDIREREVEDLFYKYGNITHIDLKVPPRPPGYAFVEFEDTQDAED 60
MS R+SRTVYVGNLPGDIREREVEDLF KYG + IDLKVPPRPPGYAFVEF+D +DAED
Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60
Query: 61 AIRGRDGYDFDGHRLRVELAH--------XXXXXXXXXXXXXXXXXXXXXXXXXXXXEYR 112
AI GRDGYDFDGHRLRVELAH E+R
Sbjct: 61 AIHGRDGYDFDGHRLRVELAHGGRRSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEFR 120
Query: 113 VLVSGLPSSASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNHDDMKYAVKKLDDSE 172
VLV+GLPSSASWQDLKDHMRK GDVCFSQV+ D RGTTG+VDYT ++DMKYA+KKLDD+E
Sbjct: 121 VLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDTE 180
Query: 173 FRNAFSRGYVRVRQY 187
FRNAFS GYVRVR+Y
Sbjct: 181 FRNAFSNGYVRVREY 195
>AT4G02430.2 | Symbols: SR34b, At-SR34b | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr4:1069186-1071313 FORWARD
LENGTH=278
Length = 278
Score = 253 bits (646), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 131/196 (66%), Positives = 144/196 (73%), Gaps = 12/196 (6%)
Query: 1 MSRRTSRTVYVGNLPGDIREREVEDLFYKYGNITHIDLKVPPRPPGYAFVEFEDTQDAED 60
MS R+SRT+YVGNLPGDIREREVEDLF KYG + IDLK+PPRPPGYAFVEFED +DA+D
Sbjct: 1 MSSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADD 60
Query: 61 AIRGRDGYDFDGHRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXX---------XXXXEY 111
AI GRDGYDFDGH LRVELAH EY
Sbjct: 61 AIYGRDGYDFDGHHLRVELAHGGRRSSHDARGSYSGRGRGGRGGGDGGGRERGPSRRSEY 120
Query: 112 RVLVSGLPSSASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNHDDMKYAVKKLDDS 171
RV+VSGLPSSASWQDLKDHMRK G+VCFSQVF DGRGTTGIVDYT+++DMKYA LDD+
Sbjct: 121 RVVVSGLPSSASWQDLKDHMRKGGEVCFSQVFRDGRGTTGIVDYTSYEDMKYA---LDDT 177
Query: 172 EFRNAFSRGYVRVRQY 187
EFRNAFS YVRVR+Y
Sbjct: 178 EFRNAFSHEYVRVREY 193
>AT1G09140.1 | Symbols: ATSRP30, SR30, At-SR30 | SERINE-ARGININE
PROTEIN 30 | chr1:2942887-2945818 REVERSE LENGTH=268
Length = 268
Score = 249 bits (635), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 123/187 (65%), Positives = 143/187 (76%), Gaps = 2/187 (1%)
Query: 1 MSRRTSRTVYVGNLPGDIREREVEDLFYKYGNITHIDLKVPPRPPGYAFVEFEDTQDAED 60
MS R +RT+YVGNLPGDIR+ EVEDLFYKYG I IDLK+PPRPPGYAFVEFED +DA+D
Sbjct: 1 MSSRWNRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADD 60
Query: 61 AIRGRDGYDFDGHRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVSGLPS 120
AI GRDGYDFDG RLRVE+AH +YRVLV+GLP
Sbjct: 61 AIYGRDGYDFDGCRLRVEIAHGGRRFSPSVDRYSSSYSASRAPSRRS--DYRVLVTGLPP 118
Query: 121 SASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNHDDMKYAVKKLDDSEFRNAFSRG 180
SASWQDLKDHMRKAGDVCFS+VF D +G +G+VDY+N+DDMKYA++KLD +EFRNAFS
Sbjct: 119 SASWQDLKDHMRKAGDVCFSEVFPDRKGMSGVVDYSNYDDMKYAIRKLDATEFRNAFSSA 178
Query: 181 YVRVRQY 187
Y+RVR+Y
Sbjct: 179 YIRVREY 185
>AT1G09140.2 | Symbols: ATSRP30, SR30, At-SR30 | SERINE-ARGININE
PROTEIN 30 | chr1:2943528-2945818 REVERSE LENGTH=256
Length = 256
Score = 248 bits (634), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 123/187 (65%), Positives = 143/187 (76%), Gaps = 2/187 (1%)
Query: 1 MSRRTSRTVYVGNLPGDIREREVEDLFYKYGNITHIDLKVPPRPPGYAFVEFEDTQDAED 60
MS R +RT+YVGNLPGDIR+ EVEDLFYKYG I IDLK+PPRPPGYAFVEFED +DA+D
Sbjct: 1 MSSRWNRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADD 60
Query: 61 AIRGRDGYDFDGHRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVSGLPS 120
AI GRDGYDFDG RLRVE+AH +YRVLV+GLP
Sbjct: 61 AIYGRDGYDFDGCRLRVEIAHGGRRFSPSVDRYSSSYSASRAPSRRS--DYRVLVTGLPP 118
Query: 121 SASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNHDDMKYAVKKLDDSEFRNAFSRG 180
SASWQDLKDHMRKAGDVCFS+VF D +G +G+VDY+N+DDMKYA++KLD +EFRNAFS
Sbjct: 119 SASWQDLKDHMRKAGDVCFSEVFPDRKGMSGVVDYSNYDDMKYAIRKLDATEFRNAFSSA 178
Query: 181 YVRVRQY 187
Y+RVR+Y
Sbjct: 179 YIRVREY 185
>AT3G49430.3 | Symbols: SRp34a, SR34a, At-SR34a | SER/ARG-rich
protein 34A | chr3:18332668-18334829 FORWARD LENGTH=300
Length = 300
Score = 237 bits (604), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 117/198 (59%), Positives = 141/198 (71%), Gaps = 11/198 (5%)
Query: 1 MSRRTSRTVYVGNLPGDIREREVEDLFYKYGNITHIDLKVPPRPPGYAFVEFEDTQDAED 60
MS R SR++YVGNLPGDIRE E+ED+FYKYG I I+LKVPPRPP Y FVEFE ++DAED
Sbjct: 1 MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60
Query: 61 AIRGRDGYDFDGHRLRVELAHXXXXXXXX-----------XXXXXXXXXXXXXXXXXXXX 109
AI+GRDGY+ DG RLRVELAH
Sbjct: 61 AIKGRDGYNLDGCRLRVELAHGGRGQSSSDRRGGYGGGGSGYGGGGGGGGSARFGVSRHS 120
Query: 110 EYRVLVSGLPSSASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNHDDMKYAVKKLD 169
E+RV+V GLPSSASWQDLKDHMRKAGDVCF++V D GT G+VDYTN+DDMKYA++KLD
Sbjct: 121 EFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDSDGTYGVVDYTNYDDMKYAIRKLD 180
Query: 170 DSEFRNAFSRGYVRVRQY 187
D+EFRN ++RG++RV++Y
Sbjct: 181 DTEFRNPWARGFIRVKKY 198
>AT3G49430.1 | Symbols: SRp34a, SR34a, At-SR34a | SER/ARG-rich
protein 34A | chr3:18332668-18334829 FORWARD LENGTH=300
Length = 300
Score = 237 bits (604), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 117/198 (59%), Positives = 141/198 (71%), Gaps = 11/198 (5%)
Query: 1 MSRRTSRTVYVGNLPGDIREREVEDLFYKYGNITHIDLKVPPRPPGYAFVEFEDTQDAED 60
MS R SR++YVGNLPGDIRE E+ED+FYKYG I I+LKVPPRPP Y FVEFE ++DAED
Sbjct: 1 MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60
Query: 61 AIRGRDGYDFDGHRLRVELAHXXXXXXXX-----------XXXXXXXXXXXXXXXXXXXX 109
AI+GRDGY+ DG RLRVELAH
Sbjct: 61 AIKGRDGYNLDGCRLRVELAHGGRGQSSSDRRGGYGGGGSGYGGGGGGGGSARFGVSRHS 120
Query: 110 EYRVLVSGLPSSASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNHDDMKYAVKKLD 169
E+RV+V GLPSSASWQDLKDHMRKAGDVCF++V D GT G+VDYTN+DDMKYA++KLD
Sbjct: 121 EFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDSDGTYGVVDYTNYDDMKYAIRKLD 180
Query: 170 DSEFRNAFSRGYVRVRQY 187
D+EFRN ++RG++RV++Y
Sbjct: 181 DTEFRNPWARGFIRVKKY 198
>AT3G49430.2 | Symbols: SRp34a, SR34a, At-SR34a | SER/ARG-rich
protein 34A | chr3:18332668-18334617 FORWARD LENGTH=297
Length = 297
Score = 236 bits (603), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 117/198 (59%), Positives = 141/198 (71%), Gaps = 11/198 (5%)
Query: 1 MSRRTSRTVYVGNLPGDIREREVEDLFYKYGNITHIDLKVPPRPPGYAFVEFEDTQDAED 60
MS R SR++YVGNLPGDIRE E+ED+FYKYG I I+LKVPPRPP Y FVEFE ++DAED
Sbjct: 1 MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60
Query: 61 AIRGRDGYDFDGHRLRVELAHXXXXXXXX-----------XXXXXXXXXXXXXXXXXXXX 109
AI+GRDGY+ DG RLRVELAH
Sbjct: 61 AIKGRDGYNLDGCRLRVELAHGGRGQSSSDRRGGYGGGGSGYGGGGGGGGSARFGVSRHS 120
Query: 110 EYRVLVSGLPSSASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNHDDMKYAVKKLD 169
E+RV+V GLPSSASWQDLKDHMRKAGDVCF++V D GT G+VDYTN+DDMKYA++KLD
Sbjct: 121 EFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDSDGTYGVVDYTNYDDMKYAIRKLD 180
Query: 170 DSEFRNAFSRGYVRVRQY 187
D+EFRN ++RG++RV++Y
Sbjct: 181 DTEFRNPWARGFIRVKKY 198
>AT4G02430.1 | Symbols: SR34b, At-SR34b | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr4:1069186-1070543 FORWARD
LENGTH=178
Length = 178
Score = 232 bits (591), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 117/176 (66%), Positives = 129/176 (73%), Gaps = 9/176 (5%)
Query: 1 MSRRTSRTVYVGNLPGDIREREVEDLFYKYGNITHIDLKVPPRPPGYAFVEFEDTQDAED 60
MS R+SRT+YVGNLPGDIREREVEDLF KYG + IDLK+PPRPPGYAFVEFED +DA+D
Sbjct: 1 MSSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADD 60
Query: 61 AIRGRDGYDFDGHRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXX---------XXXXEY 111
AI GRDGYDFDGH LRVELAH EY
Sbjct: 61 AIYGRDGYDFDGHHLRVELAHGGRRSSHDARGSYSGRGRGGRGGGDGGGRERGPSRRSEY 120
Query: 112 RVLVSGLPSSASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNHDDMKYAVKK 167
RV+VSGLPSSASWQDLKDHMRK G+VCFSQVF DGRGTTGIVDYT+++DMKYA+KK
Sbjct: 121 RVVVSGLPSSASWQDLKDHMRKGGEVCFSQVFRDGRGTTGIVDYTSYEDMKYAIKK 176
>AT4G25500.4 | Symbols: RSP35, RS40, At-RS40 |
arginine/serine-rich splicing factor 35 |
chr4:13025168-13027243 FORWARD LENGTH=350
Length = 350
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 46/74 (62%), Gaps = 7/74 (9%)
Query: 7 RTVYVGNLPGDIREREVEDLFYKYGNITHIDLKVPPRPPGYAFVEFEDTQDAEDAIRGRD 66
+ V+ GN D RE ++E LF KYG + +D+K G+AFV ED +DAEDAIR D
Sbjct: 2 KPVFCGNFEYDAREGDLERLFRKYGKVERVDMKA-----GFAFVYMEDERDAEDAIRALD 56
Query: 67 GYDF--DGHRLRVE 78
++F G RLRVE
Sbjct: 57 RFEFGRKGRRLRVE 70
>AT4G25500.1 | Symbols: ATRSP35, ATRSP40, AT-SRP40, RSP35, RS40,
At-RS40 | arginine/serine-rich splicing factor 35 |
chr4:13025168-13027243 FORWARD LENGTH=350
Length = 350
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 46/74 (62%), Gaps = 7/74 (9%)
Query: 7 RTVYVGNLPGDIREREVEDLFYKYGNITHIDLKVPPRPPGYAFVEFEDTQDAEDAIRGRD 66
+ V+ GN D RE ++E LF KYG + +D+K G+AFV ED +DAEDAIR D
Sbjct: 2 KPVFCGNFEYDAREGDLERLFRKYGKVERVDMKA-----GFAFVYMEDERDAEDAIRALD 56
Query: 67 GYDF--DGHRLRVE 78
++F G RLRVE
Sbjct: 57 RFEFGRKGRRLRVE 70
>AT5G52040.2 | Symbols: ATRSP41, RS41, At-RS41 | RNA-binding
(RRM/RBD/RNP motifs) family protein |
chr5:21131081-21133318 FORWARD LENGTH=357
Length = 357
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 7/74 (9%)
Query: 7 RTVYVGNLPGDIREREVEDLFYKYGNITHIDLKVPPRPPGYAFVEFEDTQDAEDAIRGRD 66
+ V+ GN D RE ++E LF KYG + +D+K G+AFV ED +DAEDAIR D
Sbjct: 2 KPVFCGNFEYDARESDLERLFRKYGKVERVDMKA-----GFAFVYMEDERDAEDAIRALD 56
Query: 67 GYDF--DGHRLRVE 78
+++ G RLRVE
Sbjct: 57 RFEYGRTGRRLRVE 70
>AT5G52040.1 | Symbols: ATRSP41, RS41, At-RS41 | RNA-binding
(RRM/RBD/RNP motifs) family protein |
chr5:21131081-21133318 FORWARD LENGTH=356
Length = 356
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 7/74 (9%)
Query: 7 RTVYVGNLPGDIREREVEDLFYKYGNITHIDLKVPPRPPGYAFVEFEDTQDAEDAIRGRD 66
+ V+ GN D RE ++E LF KYG + +D+K G+AFV ED +DAEDAIR D
Sbjct: 2 KPVFCGNFEYDARESDLERLFRKYGKVERVDMKA-----GFAFVYMEDERDAEDAIRALD 56
Query: 67 GYDF--DGHRLRVE 78
+++ G RLRVE
Sbjct: 57 RFEYGRTGRRLRVE 70
>AT2G24590.1 | Symbols: RSZ22a, At-RSZ22a | RNA recognition motif
and CCHC-type zinc finger domains containing protein |
chr2:10449837-10450860 FORWARD LENGTH=196
Length = 196
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 47/73 (64%), Gaps = 6/73 (8%)
Query: 9 VYVGNLPGDIREREVEDLFYKYGNITHIDLKVPPRPPGYAFVEFEDTQDAEDAIRGRDGY 68
VYVGNL + ERE+ED F +G I + V RPPGYAF++FED++DA DAIR DG
Sbjct: 4 VYVGNLDPRVTERELEDEFRSFGVIRSV--WVARRPPGYAFLDFEDSRDARDAIREVDGK 61
Query: 69 DFDGHRLRVELAH 81
+ RVE +H
Sbjct: 62 NG----WRVEQSH 70
>AT3G61860.1 | Symbols: ATRSP31, RSP31, At-RS31, RS31 |
RNA-binding (RRM/RBD/RNP motifs) family protein |
chr3:22900311-22902159 REVERSE LENGTH=264
Length = 264
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 47/76 (61%), Gaps = 7/76 (9%)
Query: 7 RTVYVGNLPGDIREREVEDLFYKYGNITHIDLKVPPRPPGYAFVEFEDTQDAEDAIRGRD 66
R V+VGN + R+ ++E LF KYG + +D+K GYAFV FED +DAEDAIR D
Sbjct: 2 RPVFVGNFEYETRQSDLERLFDKYGRVDRVDMKS-----GYAFVYFEDERDAEDAIRKLD 56
Query: 67 GYDF--DGHRLRVELA 80
+ F + RL VE A
Sbjct: 57 NFPFGYEKRRLSVEWA 72
>AT4G31580.2 | Symbols: SRZ-22, SRZ22, RSZP22, RSZ22, At-RSZ22 |
serine/arginine-rich 22 | chr4:15306983-15308064
FORWARD LENGTH=200
Length = 200
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 46/73 (63%), Gaps = 6/73 (8%)
Query: 9 VYVGNLPGDIREREVEDLFYKYGNITHIDLKVPPRPPGYAFVEFEDTQDAEDAIRGRDGY 68
VYVGNL + ERE+ED F +G + + V RPPGYAF++FED +DA DAIR DG
Sbjct: 4 VYVGNLDPRVTERELEDEFRAFGVVRSV--WVARRPPGYAFLDFEDPRDARDAIRALDGK 61
Query: 69 DFDGHRLRVELAH 81
+ RVE +H
Sbjct: 62 NG----WRVEQSH 70
>AT4G31580.1 | Symbols: SRZ-22, SRZ22, RSZP22, RSZ22, At-RSZ22 |
serine/arginine-rich 22 | chr4:15306983-15308064
FORWARD LENGTH=200
Length = 200
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 46/73 (63%), Gaps = 6/73 (8%)
Query: 9 VYVGNLPGDIREREVEDLFYKYGNITHIDLKVPPRPPGYAFVEFEDTQDAEDAIRGRDGY 68
VYVGNL + ERE+ED F +G + + V RPPGYAF++FED +DA DAIR DG
Sbjct: 4 VYVGNLDPRVTERELEDEFRAFGVVRSV--WVARRPPGYAFLDFEDPRDARDAIRALDGK 61
Query: 69 DFDGHRLRVELAH 81
+ RVE +H
Sbjct: 62 NG----WRVEQSH 70
>AT3G53500.2 | Symbols: RSZ32, RS2Z32, At-RS2Z | RNA-binding
(RRM/RBD/RNP motifs) family protein with retrovirus
zinc finger-like domain | chr3:19834557-19836507
REVERSE LENGTH=284
Length = 284
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 44/73 (60%), Gaps = 5/73 (6%)
Query: 9 VYVGNLPGDIREREVEDLFYKYGNITHIDLKVPPRPPGYAFVEFEDTQDAEDAIRGRDGY 68
+YVG L R R++E LF +YG + +D+K YAFVEF D +DA+DA DG
Sbjct: 13 LYVGRLSSRTRTRDLERLFSRYGRVRDVDMKR-----DYAFVEFSDPRDADDARYYLDGR 67
Query: 69 DFDGHRLRVELAH 81
DFDG R+ VE +
Sbjct: 68 DFDGSRITVEASR 80
>AT2G37340.1 | Symbols: RSZ33, ATRSZ33, RS2Z33, AT-RS2Z33 |
arginine/serine-rich zinc knuckle-containing protein 33
| chr2:15670372-15672331 REVERSE LENGTH=290
Length = 290
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 44/73 (60%), Gaps = 5/73 (6%)
Query: 9 VYVGNLPGDIREREVEDLFYKYGNITHIDLKVPPRPPGYAFVEFEDTQDAEDAIRGRDGY 68
+YVG L R R++E LF +YG + +D+K YAFVEF D +DA+DA DG
Sbjct: 13 LYVGRLSSRTRTRDLERLFSRYGRVRDVDMKR-----DYAFVEFGDPRDADDARHYLDGR 67
Query: 69 DFDGHRLRVELAH 81
DFDG R+ VE +
Sbjct: 68 DFDGSRITVEFSR 80
>AT2G46610.1 | Symbols: RS31a, At-RS31a | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr2:19136769-19138492 REVERSE
LENGTH=250
Length = 250
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 45/76 (59%), Gaps = 7/76 (9%)
Query: 7 RTVYVGNLPGDIREREVEDLFYKYGNITHIDLKVPPRPPGYAFVEFEDTQDAEDAIRGRD 66
R VYVGN D R ++E LF K+G + +D+K GYAFV FED +DAEDAIR D
Sbjct: 2 RHVYVGNFDYDTRHSDLERLFSKFGRVKRVDMKS-----GYAFVYFEDERDAEDAIRRTD 56
Query: 67 GYDFD-GHR-LRVELA 80
F G R L VE A
Sbjct: 57 NTTFGYGRRKLSVEWA 72
>AT1G23860.3 | Symbols: SRZ-21, SRZ21, RSZ21, At-RSZ21 |
RS-containing zinc finger protein 21 |
chr1:8428091-8429164 REVERSE LENGTH=164
Length = 164
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 46/73 (63%), Gaps = 6/73 (8%)
Query: 9 VYVGNLPGDIREREVEDLFYKYGNITHIDLKVPPRPPGYAFVEFEDTQDAEDAIRGRDGY 68
VYVGNL + ERE+ED F +G + ++ V RPPGYAF+EF+D +DA DAI D
Sbjct: 4 VYVGNLDPRVTERELEDEFKAFGVLRNV--WVARRPPGYAFLEFDDERDALDAISALD-- 59
Query: 69 DFDGHRLRVELAH 81
+ RVEL+H
Sbjct: 60 --RKNGWRVELSH 70
>AT1G23860.2 | Symbols: SRZ-21, SRZ21, RSZ21, At-RSZ21 |
RS-containing zinc finger protein 21 |
chr1:8428091-8429164 REVERSE LENGTH=187
Length = 187
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 46/73 (63%), Gaps = 6/73 (8%)
Query: 9 VYVGNLPGDIREREVEDLFYKYGNITHIDLKVPPRPPGYAFVEFEDTQDAEDAIRGRDGY 68
VYVGNL + ERE+ED F +G + ++ V RPPGYAF+EF+D +DA DAI D
Sbjct: 4 VYVGNLDPRVTERELEDEFKAFGVLRNV--WVARRPPGYAFLEFDDERDALDAISALD-- 59
Query: 69 DFDGHRLRVELAH 81
+ RVEL+H
Sbjct: 60 --RKNGWRVELSH 70
>AT1G23860.1 | Symbols: SRZ-21, SRZ21, RSZP21, RSZ21, At-RSZ21 |
RS-containing zinc finger protein 21 |
chr1:8428091-8429164 REVERSE LENGTH=187
Length = 187
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 46/73 (63%), Gaps = 6/73 (8%)
Query: 9 VYVGNLPGDIREREVEDLFYKYGNITHIDLKVPPRPPGYAFVEFEDTQDAEDAIRGRDGY 68
VYVGNL + ERE+ED F +G + ++ V RPPGYAF+EF+D +DA DAI D
Sbjct: 4 VYVGNLDPRVTERELEDEFKAFGVLRNV--WVARRPPGYAFLEFDDERDALDAISALD-- 59
Query: 69 DFDGHRLRVELAH 81
+ RVEL+H
Sbjct: 60 --RKNGWRVELSH 70
>AT1G23860.4 | Symbols: RSZP21, RSZ21, At-RSZ21 | RS-containing
zinc finger protein 21 | chr1:8428091-8429164 REVERSE
LENGTH=183
Length = 183
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 46/73 (63%), Gaps = 6/73 (8%)
Query: 9 VYVGNLPGDIREREVEDLFYKYGNITHIDLKVPPRPPGYAFVEFEDTQDAEDAIRGRDGY 68
VYVGNL + ERE+ED F +G + ++ V RPPGYAF+EF+D +DA DAI D
Sbjct: 4 VYVGNLDPRVTERELEDEFKAFGVLRNV--WVARRPPGYAFLEFDDERDALDAISALD-- 59
Query: 69 DFDGHRLRVELAH 81
+ RVEL+H
Sbjct: 60 --RKNGWRVELSH 70
>AT4G12640.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr4:7462697-7467630 FORWARD LENGTH=823
Length = 823
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 7/77 (9%)
Query: 6 SRTVYVGNLPGDIREREVEDLFYKYGNITHIDLKVPPRPPG--YAFVEFEDTQDAEDAIR 63
SR ++VGNLP I ERE+ D F ++G + + + PG YAFV F +DA AI
Sbjct: 22 SRHLWVGNLPHGILERELADRFLRFGELESLAFQ-----PGRSYAFVNFNHDEDAFAAIE 76
Query: 64 GRDGYDFDGHRLRVELA 80
G+ G+ LR+E A
Sbjct: 77 SLQGFPLSGNPLRIEFA 93
>AT1G73530.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:27643801-27645386 REVERSE LENGTH=181
Length = 181
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 9 VYVGNLPGDIREREVEDLFYKYGNITHIDL---KVPPRPPGYAFVEFEDTQDAEDAIRGR 65
+YV L E + D F ++GN+ H+++ KV RP G+AF+ +E ++A AI+G
Sbjct: 79 LYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGM 138
Query: 66 DGYDFDGHRLRVELA 80
G DG + VE A
Sbjct: 139 HGKFLDGRVIFVEEA 153
>AT5G12190.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:3940731-3941105 REVERSE LENGTH=124
Length = 124
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 39/73 (53%)
Query: 5 TSRTVYVGNLPGDIREREVEDLFYKYGNITHIDLKVPPRPPGYAFVEFEDTQDAEDAIRG 64
+R +YV NLP +I E+ D+F KYG I I + G AFV +ED DA++A+
Sbjct: 17 VNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKATKGTAFVVYEDIYDAKNAVDH 76
Query: 65 RDGYDFDGHRLRV 77
G++ L V
Sbjct: 77 LSGFNVANRYLIV 89
>AT3G11400.2 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation
initiation factor 3G1 | chr3:3578536-3580366 FORWARD
LENGTH=321
Length = 321
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 3 RRTSRTVYVGNLPGDIREREVEDLFYKYGNITHIDLKVPPRPP---GYAFVEFEDTQDAE 59
R +V V NL D RE ++ +LF+ +G +T + + + + G+ FV F +DA+
Sbjct: 236 RNDENSVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQ 295
Query: 60 DAIRGRDGYDFDGHRLRVELA 80
AI +GY +D LRVE A
Sbjct: 296 RAINKLNGYGYDNLILRVEWA 316
>AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:15634980-15636331 REVERSE LENGTH=289
Length = 289
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 9 VYVGNLPGDIREREVEDLFYKYGNITHIDL---KVPPRPPGYAFVEFEDTQDAEDAIRGR 65
VYVGNL + + +E LF + G + + + R G+ FV ++ +Q+ ++AI+
Sbjct: 206 VYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSL 265
Query: 66 DGYDFDGHRLRVELAH 81
DG D DG ++RV A
Sbjct: 266 DGADLDGRQIRVSEAE 281
>AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RNA
binding protein | chr4:12766223-12767952 REVERSE
LENGTH=329
Length = 329
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 9 VYVGNLPGDIREREVEDLFYKYGNITHIDL---KVPPRPPGYAFVEFEDTQDAEDAIRGR 65
VYVGNLP D+ +E LF ++G + + + R G+ FV D + +AI
Sbjct: 246 VYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISAL 305
Query: 66 DGYDFDGHRLRVELAH 81
DG + +G +RV +A
Sbjct: 306 DGQNLEGRAIRVNVAE 321
>AT3G11400.1 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation
initiation factor 3G1 | chr3:3578536-3580366 FORWARD
LENGTH=294
Length = 294
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 3 RRTSRTVYVGNLPGDIREREVEDLFYKYGNITHIDLKVPPRPP---GYAFVEFEDTQDAE 59
R +V V NL D RE ++ +LF+ +G +T + + + + G+ FV F +DA+
Sbjct: 209 RNDENSVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQ 268
Query: 60 DAIRGRDGYDFDGHRLRVELA 80
AI +GY +D LRVE A
Sbjct: 269 RAINKLNGYGYDNLILRVEWA 289
>AT3G52660.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19522598-19524735 FORWARD LENGTH=471
Length = 471
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
Query: 7 RTVYVGNLPGDIREREVEDLFYKYGNITHIDLKVPPRPPG-----YAFVEFEDTQDAEDA 61
+ +Y+ NLP DI + ++ LF +G I + + +PP PG Y FV + + A
Sbjct: 268 KALYIKNLPRDITQERLKALFEHHGKI--LKVVIPPAKPGKEDSRYGFVHYAERTSVMRA 325
Query: 62 IRGRDGYDFDGHRLRVELA 80
++ + Y+ DGH L LA
Sbjct: 326 LKNTERYEIDGHMLDCTLA 344
>AT3G52660.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19522598-19524735 FORWARD LENGTH=471
Length = 471
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
Query: 7 RTVYVGNLPGDIREREVEDLFYKYGNITHIDLKVPPRPPG-----YAFVEFEDTQDAEDA 61
+ +Y+ NLP DI + ++ LF +G I + + +PP PG Y FV + + A
Sbjct: 268 KALYIKNLPRDITQERLKALFEHHGKI--LKVVIPPAKPGKEDSRYGFVHYAERTSVMRA 325
Query: 62 IRGRDGYDFDGHRLRVELA 80
++ + Y+ DGH L LA
Sbjct: 326 LKNTERYEIDGHMLDCTLA 344