Miyakogusa Predicted Gene

Lj1g3v4885890.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4885890.1 tr|B9GSA2|B9GSA2_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_644752 PE=4 SV=1,92,3e-19,
,CUFF.33531.1
         (99 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G47690.2 | Symbols:  | NADH-ubiquinone oxidoreductase-related...    97   3e-21
AT3G62790.1 | Symbols:  | NADH-ubiquinone oxidoreductase-related...    95   9e-21
AT2G47690.1 | Symbols:  | NADH-ubiquinone oxidoreductase-related...    94   1e-20

>AT2G47690.2 | Symbols:  | NADH-ubiquinone oxidoreductase-related
          | chr2:19551263-19551991 FORWARD LENGTH=99
          Length = 99

 Score = 96.7 bits (239), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 45/51 (88%), Positives = 46/51 (90%)

Query: 1  MASGWGITGNKGRCYDFWIDFSEGMSTCREPKDRARLREDYLECLHHSKEV 51
          MASGWGITGNKGRCYDFW+DFSE MS CREPKD   LREDYLECLHHSKEV
Sbjct: 36 MASGWGITGNKGRCYDFWMDFSECMSHCREPKDCTLLREDYLECLHHSKEV 86


>AT3G62790.1 | Symbols:  | NADH-ubiquinone oxidoreductase-related
          | chr3:23223321-23224221 REVERSE LENGTH=83
          Length = 83

 Score = 95.1 bits (235), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 44/50 (88%), Positives = 45/50 (90%)

Query: 1  MASGWGITGNKGRCYDFWIDFSEGMSTCREPKDRARLREDYLECLHHSKE 50
          MASGWGITGNKGRCYDFW+DFSE MS CREPKD   LREDYLECLHHSKE
Sbjct: 1  MASGWGITGNKGRCYDFWMDFSECMSHCREPKDCTLLREDYLECLHHSKE 50


>AT2G47690.1 | Symbols:  | NADH-ubiquinone oxidoreductase-related
          | chr2:19551263-19552052 FORWARD LENGTH=118
          Length = 118

 Score = 94.4 bits (233), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 44/50 (88%), Positives = 45/50 (90%)

Query: 1  MASGWGITGNKGRCYDFWIDFSEGMSTCREPKDRARLREDYLECLHHSKE 50
          MASGWGITGNKGRCYDFW+DFSE MS CREPKD   LREDYLECLHHSKE
Sbjct: 36 MASGWGITGNKGRCYDFWMDFSECMSHCREPKDCTLLREDYLECLHHSKE 85