Miyakogusa Predicted Gene
- Lj1g3v4863130.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v4863130.1 Non Chatacterized Hit- tr|C6TBP9|C6TBP9_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.37451
PE,84.88,0,seg,NULL; T_SNARE,Target SNARE coiled-coil domain;
SUBFAMILY NOT NAMED,NULL; SYNTAXIN,NULL; SYNTAXIN,CUFF.33490.1
(324 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G05710.2 | Symbols: SYP43, ATSYP43 | syntaxin of plants 43 | ... 407 e-114
AT3G05710.1 | Symbols: SYP43, ATSYP43 | syntaxin of plants 43 | ... 406 e-113
AT5G26980.2 | Symbols: SYP41, ATSYP41, ATTLG2A | syntaxin of pla... 396 e-111
AT5G26980.1 | Symbols: SYP41, ATSYP41, ATTLG2A | syntaxin of pla... 396 e-111
AT4G02195.1 | Symbols: SYP42, TLG2B, ATSYP42, ATTLG2B | syntaxin... 389 e-108
AT5G16830.1 | Symbols: SYP21, ATSYP21, PEP12, ATPEP12, PEP12P | ... 52 4e-07
AT5G46860.1 | Symbols: VAM3, ATVAM3, SYP22, ATSYP22, SGR3 | Synt... 51 1e-06
>AT3G05710.2 | Symbols: SYP43, ATSYP43 | syntaxin of plants 43 |
chr3:1685262-1687229 FORWARD LENGTH=331
Length = 331
Score = 407 bits (1046), Expect = e-114, Method: Compositional matrix adjust.
Identities = 215/337 (63%), Positives = 252/337 (74%), Gaps = 19/337 (5%)
Query: 1 MATRNRTLQFRRHRDAVKSVRAP--------LXXXXXXXG-----GPVIEMVSTXXXXXX 47
MATRNRTL FR++R++++SVRAP L G GPVIEM ST
Sbjct: 1 MATRNRTLLFRKYRNSLRSVRAPMGSSSSSTLTEHNSLTGAKSGLGPVIEMASTSLLNPN 60
Query: 48 XXXXYEPLSTHDPGPGTSRDAFTVGLPPSWVDDSEVIATSIQQAKVKMAELTKAHAKALM 107
Y P+ST DPG +SR TVGLPP WVD SE I+ IQ+A+ KMAEL KAHAKALM
Sbjct: 61 RS--YAPVSTEDPG-NSSRGTITVGLPPDWVDVSEEISVYIQRARTKMAELGKAHAKALM 117
Query: 108 PSFGDGKDDQHLIETLTQEITALLRKSEVRLKRLSTAGGSSEDSNVRKNVQRSLATDLQN 167
PSFGDGK+DQH IETLTQE+T LL+KSE +L+RLS A G SEDSNVRKNVQRSLATDLQN
Sbjct: 118 PSFGDGKEDQHQIETLTQEVTFLLKKSEKQLQRLS-AAGPSEDSNVRKNVQRSLATDLQN 176
Query: 168 LSMDLRRKQSAYLKRLQQQKEGYDGIDLEMNFNGSKSGMQDDGFSDVGFSEAQMTKLXXX 227
LSM+LR+KQS YLKRL+ QKE DG DLEMN NGS+ +DD F D+ FSE QM+K+
Sbjct: 177 LSMELRKKQSTYLKRLRLQKE--DGADLEMNLNGSRYKAEDDDFDDMVFSEHQMSKIKKS 234
Query: 228 XXXXXXXXXXXXQVVKSVNELAQIMKDLSVLVIDQGTIVDRIDYNIQSVATSVEEGLKQL 287
QVV+SV+ELAQIMKDLS LVIDQGTIVDRIDYNIQ+VA++V++GLKQL
Sbjct: 235 EEISIEREKEIQQVVESVSELAQIMKDLSALVIDQGTIVDRIDYNIQNVASTVDDGLKQL 294
Query: 288 RKAERTQKSGGMVTCATVLVIMCFVMLALLILKEIIF 324
+KAERTQ+ GGMV CA+VLVI+CF+ML LLILKEI+
Sbjct: 295 QKAERTQRQGGMVMCASVLVILCFIMLVLLILKEILL 331
>AT3G05710.1 | Symbols: SYP43, ATSYP43 | syntaxin of plants 43 |
chr3:1685262-1687229 FORWARD LENGTH=330
Length = 330
Score = 406 bits (1043), Expect = e-113, Method: Compositional matrix adjust.
Identities = 215/337 (63%), Positives = 251/337 (74%), Gaps = 20/337 (5%)
Query: 1 MATRNRTLQFRRHRDAVKSVRAP--------LXXXXXXXG-----GPVIEMVSTXXXXXX 47
MATRNRTL FR++R++++SVRAP L G GPVIEM ST
Sbjct: 1 MATRNRTLLFRKYRNSLRSVRAPMGSSSSSTLTEHNSLTGAKSGLGPVIEMASTSLLNPN 60
Query: 48 XXXXYEPLSTHDPGPGTSRDAFTVGLPPSWVDDSEVIATSIQQAKVKMAELTKAHAKALM 107
Y P+ST DPG SR TVGLPP WVD SE I+ IQ+A+ KMAEL KAHAKALM
Sbjct: 61 RS--YAPVSTEDPG--NSRGTITVGLPPDWVDVSEEISVYIQRARTKMAELGKAHAKALM 116
Query: 108 PSFGDGKDDQHLIETLTQEITALLRKSEVRLKRLSTAGGSSEDSNVRKNVQRSLATDLQN 167
PSFGDGK+DQH IETLTQE+T LL+KSE +L+RLS A G SEDSNVRKNVQRSLATDLQN
Sbjct: 117 PSFGDGKEDQHQIETLTQEVTFLLKKSEKQLQRLS-AAGPSEDSNVRKNVQRSLATDLQN 175
Query: 168 LSMDLRRKQSAYLKRLQQQKEGYDGIDLEMNFNGSKSGMQDDGFSDVGFSEAQMTKLXXX 227
LSM+LR+KQS YLKRL+ QKE DG DLEMN NGS+ +DD F D+ FSE QM+K+
Sbjct: 176 LSMELRKKQSTYLKRLRLQKE--DGADLEMNLNGSRYKAEDDDFDDMVFSEHQMSKIKKS 233
Query: 228 XXXXXXXXXXXXQVVKSVNELAQIMKDLSVLVIDQGTIVDRIDYNIQSVATSVEEGLKQL 287
QVV+SV+ELAQIMKDLS LVIDQGTIVDRIDYNIQ+VA++V++GLKQL
Sbjct: 234 EEISIEREKEIQQVVESVSELAQIMKDLSALVIDQGTIVDRIDYNIQNVASTVDDGLKQL 293
Query: 288 RKAERTQKSGGMVTCATVLVIMCFVMLALLILKEIIF 324
+KAERTQ+ GGMV CA+VLVI+CF+ML LLILKEI+
Sbjct: 294 QKAERTQRQGGMVMCASVLVILCFIMLVLLILKEILL 330
>AT5G26980.2 | Symbols: SYP41, ATSYP41, ATTLG2A | syntaxin of plants
41 | chr5:9488724-9490604 REVERSE LENGTH=322
Length = 322
Score = 396 bits (1018), Expect = e-111, Method: Compositional matrix adjust.
Identities = 209/329 (63%), Positives = 252/329 (76%), Gaps = 12/329 (3%)
Query: 1 MATRNRTLQFRRHRDAVKSVRAPLXXXXXXXG-----GPVIEMVSTXXXXXXXXXXYEPL 55
MATRNRTL FR++R++++SVRAPL GPVIEM ST Y P+
Sbjct: 1 MATRNRTLLFRKYRNSLRSVRAPLSSSSLTGTRSGGVGPVIEMASTSLLNPNRS--YAPI 58
Query: 56 STHDPGPGTSRDAFTVGLPPSWVDDSEVIATSIQQAKVKMAELTKAHAKALMPSFGDGKD 115
ST DPG +S+ A TVGLPP+WVD SE I+ +IQ+A+ KMAEL KAHAKALMPSFGDGK+
Sbjct: 59 STEDPGT-SSKGAITVGLPPAWVDVSEEISVNIQRARTKMAELGKAHAKALMPSFGDGKE 117
Query: 116 DQHLIETLTQEITALLRKSEVRLKRLSTAGGSSEDSNVRKNVQRSLATDLQNLSMDLRRK 175
DQH IE+LTQEIT LL+KSE +L+RLS A G SEDSNVRKNVQRSLATDLQ LSM+LR+K
Sbjct: 118 DQHNIESLTQEITFLLKKSEKQLQRLS-ASGPSEDSNVRKNVQRSLATDLQLLSMELRKK 176
Query: 176 QSAYLKRLQQQKEGYDGIDLEMNFNGSKSGMQDDGFSDVGFSEAQMTKLXXXXXXXXXXX 235
QS YLKRL+QQKE DG+DLEMN + ++ ++D F D+ +E QM+K+
Sbjct: 177 QSTYLKRLRQQKE--DGMDLEMNLSRNRYRPEEDDFGDM-LNEHQMSKIKKSEEVSVERE 233
Query: 236 XXXXQVVKSVNELAQIMKDLSVLVIDQGTIVDRIDYNIQSVATSVEEGLKQLRKAERTQK 295
QVV+SVN+LAQIMKDLS LVIDQGTIVDRIDYNI++VAT+VE+GLKQL+KAERTQ+
Sbjct: 234 KEIQQVVESVNDLAQIMKDLSALVIDQGTIVDRIDYNIENVATTVEDGLKQLQKAERTQR 293
Query: 296 SGGMVTCATVLVIMCFVMLALLILKEIIF 324
GGMV CA+VLVI+CF+ML LLILKEI
Sbjct: 294 HGGMVKCASVLVILCFIMLLLLILKEIFL 322
>AT5G26980.1 | Symbols: SYP41, ATSYP41, ATTLG2A | syntaxin of plants
41 | chr5:9488724-9490604 REVERSE LENGTH=322
Length = 322
Score = 396 bits (1018), Expect = e-111, Method: Compositional matrix adjust.
Identities = 209/329 (63%), Positives = 252/329 (76%), Gaps = 12/329 (3%)
Query: 1 MATRNRTLQFRRHRDAVKSVRAPLXXXXXXXG-----GPVIEMVSTXXXXXXXXXXYEPL 55
MATRNRTL FR++R++++SVRAPL GPVIEM ST Y P+
Sbjct: 1 MATRNRTLLFRKYRNSLRSVRAPLSSSSLTGTRSGGVGPVIEMASTSLLNPNRS--YAPI 58
Query: 56 STHDPGPGTSRDAFTVGLPPSWVDDSEVIATSIQQAKVKMAELTKAHAKALMPSFGDGKD 115
ST DPG +S+ A TVGLPP+WVD SE I+ +IQ+A+ KMAEL KAHAKALMPSFGDGK+
Sbjct: 59 STEDPGT-SSKGAITVGLPPAWVDVSEEISVNIQRARTKMAELGKAHAKALMPSFGDGKE 117
Query: 116 DQHLIETLTQEITALLRKSEVRLKRLSTAGGSSEDSNVRKNVQRSLATDLQNLSMDLRRK 175
DQH IE+LTQEIT LL+KSE +L+RLS A G SEDSNVRKNVQRSLATDLQ LSM+LR+K
Sbjct: 118 DQHNIESLTQEITFLLKKSEKQLQRLS-ASGPSEDSNVRKNVQRSLATDLQLLSMELRKK 176
Query: 176 QSAYLKRLQQQKEGYDGIDLEMNFNGSKSGMQDDGFSDVGFSEAQMTKLXXXXXXXXXXX 235
QS YLKRL+QQKE DG+DLEMN + ++ ++D F D+ +E QM+K+
Sbjct: 177 QSTYLKRLRQQKE--DGMDLEMNLSRNRYRPEEDDFGDM-LNEHQMSKIKKSEEVSVERE 233
Query: 236 XXXXQVVKSVNELAQIMKDLSVLVIDQGTIVDRIDYNIQSVATSVEEGLKQLRKAERTQK 295
QVV+SVN+LAQIMKDLS LVIDQGTIVDRIDYNI++VAT+VE+GLKQL+KAERTQ+
Sbjct: 234 KEIQQVVESVNDLAQIMKDLSALVIDQGTIVDRIDYNIENVATTVEDGLKQLQKAERTQR 293
Query: 296 SGGMVTCATVLVIMCFVMLALLILKEIIF 324
GGMV CA+VLVI+CF+ML LLILKEI
Sbjct: 294 HGGMVKCASVLVILCFIMLLLLILKEIFL 322
>AT4G02195.1 | Symbols: SYP42, TLG2B, ATSYP42, ATTLG2B | syntaxin of
plants 42 | chr4:970099-972192 REVERSE LENGTH=323
Length = 323
Score = 389 bits (999), Expect = e-108, Method: Compositional matrix adjust.
Identities = 200/326 (61%), Positives = 238/326 (73%), Gaps = 5/326 (1%)
Query: 1 MATRNRTLQFRRHRDAVKSVRAPLXXXXXXX-GGPVIEMVSTXXXXXXXXXXYEPLSTHD 59
MATRNRT +R+HRDA KS RAPL GGPVIEMVS Y PL+++D
Sbjct: 1 MATRNRTTVYRKHRDACKSARAPLSLSASDSFGGPVIEMVS-GSFSRSNHSSYAPLNSYD 59
Query: 60 PGPGTSRDAFTVGLPPSWVDDSEVIATSIQQAKVKMAELTKAHAKALMPSFGDGKDDQHL 119
PGP +S DAFT+G+PP+WVDDSE I +IQ+ + KM EL KAH+KALMP+FGD K
Sbjct: 60 PGPSSS-DAFTIGMPPAWVDDSEEITFNIQKVRDKMNELAKAHSKALMPTFGDNKGIHRE 118
Query: 120 IETLTQEITALLRKSEVRLKRLSTAGGSSEDSNVRKNVQRSLATDLQNLSMDLRRKQSAY 179
+E LT EIT LLRKSE RL+ LST G SE+SN+RKNVQRSLATDLQNLSM+LRRKQS Y
Sbjct: 119 VEMLTHEITDLLRKSEKRLQMLSTRG-PSEESNLRKNVQRSLATDLQNLSMELRRKQSTY 177
Query: 180 LKRLQQQKEGYDGIDLEMNFNGSKSGM-QDDGFSDVGFSEAQMTKLXXXXXXXXXXXXXX 238
LKRLQQQKEG D +DLE N NG S + ++D +GF E Q KL
Sbjct: 178 LKRLQQQKEGQDEVDLEFNVNGKMSRLDEEDELGGMGFDEHQTIKLKEGQHVSAEREREI 237
Query: 239 XQVVKSVNELAQIMKDLSVLVIDQGTIVDRIDYNIQSVATSVEEGLKQLRKAERTQKSGG 298
QV+ SVN+LAQIMKDLS LVIDQGTIVDRIDYN+Q+V+TSVEEG KQL+KAERTQ+ G
Sbjct: 238 QQVLGSVNDLAQIMKDLSALVIDQGTIVDRIDYNVQNVSTSVEEGYKQLQKAERTQREGA 297
Query: 299 MVTCATVLVIMCFVMLALLILKEIIF 324
MV CAT+L+++C +M+ LLILK I+F
Sbjct: 298 MVKCATILLVLCLIMIVLLILKNILF 323
>AT5G16830.1 | Symbols: SYP21, ATSYP21, PEP12, ATPEP12, PEP12P |
syntaxin of plants 21 | chr5:5533076-5535152 REVERSE
LENGTH=279
Length = 279
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 64/274 (23%), Positives = 115/274 (41%), Gaps = 39/274 (14%)
Query: 57 THDPGPGTSRDAFTVGL---PPSWVDDSEVIATSIQQAKVKMAELTKAHAKALMPSFGDG 113
T P P + FT G P S D S+ +A I + + + L+ S G
Sbjct: 10 TRSPAP----NRFTGGRQQRPSSRGDPSQEVAAGIFRISTAVNSFFR-----LVNSIGTP 60
Query: 114 KDDQHLIETLTQ---EITALLRKSEVRLKRLSTAGGSSEDSNVRKNVQRSLATDLQNLSM 170
KD L + L + +I+ L++ + +LK S A S ++K LA D Q++
Sbjct: 61 KDTLELRDKLQKTRLQISELVKNTSAKLKEASEADLHGSASQIKKIADAKLAKDFQSVLK 120
Query: 171 DLRRKQSAYLKRLQQQKE-------------GYDGIDLE---MNFNGSKSGMQDDGFSDV 214
+ ++ Q RL ++E Y+ +L+ + + ++ + +V
Sbjct: 121 EFQKAQ-----RLAAEREITYTPVVTKEIPTSYNAPELDTESLRISQQQALLLQSRRQEV 175
Query: 215 GFSEAQMTKLXXXXXXXXXXXXXXXQVVKSVNELAQIMKDLSVLVIDQGTIVDRIDYNIQ 274
F + ++T ++ VN + KDL+++V QG IVD I N+
Sbjct: 176 VFLDNEITFNEAIIEEREQGIREIEDQIRDVNGM---FKDLALMVNHQGNIVDDISSNLD 232
Query: 275 SVATSVEEGLKQLRKAERTQKSGGMVTCATVLVI 308
+ + + QLRKA +TQ+S +TC +L+
Sbjct: 233 NSHAATTQATVQLRKAAKTQRSNSSLTCLLILIF 266
>AT5G46860.1 | Symbols: VAM3, ATVAM3, SYP22, ATSYP22, SGR3 |
Syntaxin/t-SNARE family protein | chr5:19012342-19013795
REVERSE LENGTH=268
Length = 268
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 45/72 (62%), Gaps = 3/72 (4%)
Query: 240 QVVKSVNELAQIMKDLSVLVIDQGTIVDRIDYNIQSVATSVEEGLKQLRKAERTQKSGGM 299
++ + + E+ +I KDL+VLV DQG ++D I +I + + +G QL +A +TQKS
Sbjct: 187 EIHQQIGEVNEIFKDLAVLVNDQGVMIDDIGTHIDNSRAATSQGKSQLVQAAKTQKSNSS 246
Query: 300 VTCATVLVIMCF 311
+TC L+++ F
Sbjct: 247 LTC---LLLVIF 255