Miyakogusa Predicted Gene

Lj1g3v4862830.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4862830.1 Non Chatacterized Hit- tr|I1NBC1|I1NBC1_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.26300 PE,83.75,0,DNA
repair protein MutS, domain I,DNA mismatch repair protein MutS,
N-terminal; DNA repair protein M,CUFF.33462.1
         (468 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G02070.1 | Symbols: MSH6, MSH6-1, ATMSH6 | MUTS homolog 6 | c...   496   e-140
AT4G02070.2 | Symbols: MSH6 | MUTS homolog 6 | chr4:906079-91293...   486   e-137
AT3G24495.1 | Symbols: MSH7, MSH6-2, ATMSH7 | MUTS homolog 7 | c...   167   2e-41
AT4G25540.1 | Symbols: MSH3, ATMSH3 | homolog of DNA mismatch re...    62   1e-09
AT3G24320.1 | Symbols: MSH1, CHM1, ATMSH1, CHM | MUTL protein ho...    52   6e-07

>AT4G02070.1 | Symbols: MSH6, MSH6-1, ATMSH6 | MUTS homolog 6 |
           chr4:906079-912930 FORWARD LENGTH=1324
          Length = 1324

 Score =  496 bits (1277), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 246/419 (58%), Positives = 299/419 (71%), Gaps = 15/419 (3%)

Query: 62  AKVKPSGKAEPRKRKQSAPEKVEPVKKSKSGTEVGKGAFKLSVLEPTHNLD----IIKTS 117
           +KV    K + RKRK S   K    KKSK+ T      FK SV+EP   +     ++K  
Sbjct: 264 SKVNRVSKTDSRKRKTSEVTKSGGEKKSKTDTGTILKGFKASVVEPAKKIGQADRVVKGL 323

Query: 118 NDADNVATGDASERFALREAQKFRFLREDRKDAKRRRPEDENYDSRTLYLPPDFLRSLSD 177
            D  NV  GDA  RF  R+++KFRFL  DR+DAKRRRP DENYD RTLYLPPDF++ L+ 
Sbjct: 324 ED--NVLDGDALARFGARDSEKFRFLGVDRRDAKRRRPTDENYDPRTLYLPPDFVKKLTG 381

Query: 178 GQKQWWEFKSKHMDKVLFFKMGKFYELFEMDAHVGAKELDLQYMKGEQPHCGFPEKNFSM 237
           GQ+QWWEFK+KHMDKV+FFKMGKFYELFEMDAHVGAKELD+QYMKGEQPHCGFPEKNFS+
Sbjct: 382 GQRQWWEFKAKHMDKVVFFKMGKFYELFEMDAHVGAKELDIQYMKGEQPHCGFPEKNFSV 441

Query: 238 NVEKLARKGYRVLVVEQTETPEQLELRRKQKGSKDKVVRREICAVVTKGTLMDGELLSAN 297
           N+EKL RKGYRVLVVEQTETP+QLE RRK+ GSKDKVV+RE+CAVVTKGTL DGE+L  N
Sbjct: 442 NIEKLVRKGYRVLVVEQTETPDQLEQRRKETGSKDKVVKREVCAVVTKGTLTDGEMLLTN 501

Query: 298 PEAAYLMALTXXXXXXXXXXSERTYGVCIVDVTTSRVILGQFKDDSECSALCCILSEIRP 357
           P+A+YLMALT          +E  +GVC+VDV T ++ILGQFKDD +CSAL C+LSE+RP
Sbjct: 502 PDASYLMALTEGGESLTNPTAEHNFGVCLVDVATQKIILGQFKDDQDCSALSCLLSEMRP 561

Query: 358 VEIVKPAKLLSAETERVLVKHTRNPLVNELIPIVEFWDADKTLDQLKRIYRHTN------ 411
           VEI+KPAK+LS  TER +V+ TRNPLVN L+P+ EFWD++KT+ ++  IY+  N      
Sbjct: 562 VEIIKPAKVLSYATERTIVRQTRNPLVNNLVPLSEFWDSEKTIYEVGIIYKRINCQPSSA 621

Query: 412 ---DASVEDSGVDCLPGVLLELVKTGDDSRXXXXXXXXXXXXXKQAFLDERLLRFAQFE 467
              +  +   G   LP +L EL     +               +QAFLDE LLRFA+FE
Sbjct: 622 YSSEGKILGDGSSFLPKMLSELATEDKNGSLALSALGGAIYYLRQAFLDESLLRFAKFE 680


>AT4G02070.2 | Symbols: MSH6 | MUTS homolog 6 | chr4:906079-912930
           FORWARD LENGTH=1321
          Length = 1321

 Score =  486 bits (1250), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 244/419 (58%), Positives = 296/419 (70%), Gaps = 18/419 (4%)

Query: 62  AKVKPSGKAEPRKRKQSAPEKVEPVKKSKSGTEVGKGAFKLSVLEPTHNLD----IIKTS 117
           +KV    K + RKRK S   K    KKSK+ T      FK SV+EP   +     ++K  
Sbjct: 264 SKVNRVSKTDSRKRKTSEVTKSGGEKKSKTDTGTILKGFKASVVEPAKKIGQADRVVKGL 323

Query: 118 NDADNVATGDASERFALREAQKFRFLREDRKDAKRRRPEDENYDSRTLYLPPDFLRSLSD 177
            D  NV  GDA  RF  R+++KFRFL     DAKRRRP DENYD RTLYLPPDF++ L+ 
Sbjct: 324 ED--NVLDGDALARFGARDSEKFRFLG---VDAKRRRPTDENYDPRTLYLPPDFVKKLTG 378

Query: 178 GQKQWWEFKSKHMDKVLFFKMGKFYELFEMDAHVGAKELDLQYMKGEQPHCGFPEKNFSM 237
           GQ+QWWEFK+KHMDKV+FFKMGKFYELFEMDAHVGAKELD+QYMKGEQPHCGFPEKNFS+
Sbjct: 379 GQRQWWEFKAKHMDKVVFFKMGKFYELFEMDAHVGAKELDIQYMKGEQPHCGFPEKNFSV 438

Query: 238 NVEKLARKGYRVLVVEQTETPEQLELRRKQKGSKDKVVRREICAVVTKGTLMDGELLSAN 297
           N+EKL RKGYRVLVVEQTETP+QLE RRK+ GSKDKVV+RE+CAVVTKGTL DGE+L  N
Sbjct: 439 NIEKLVRKGYRVLVVEQTETPDQLEQRRKETGSKDKVVKREVCAVVTKGTLTDGEMLLTN 498

Query: 298 PEAAYLMALTXXXXXXXXXXSERTYGVCIVDVTTSRVILGQFKDDSECSALCCILSEIRP 357
           P+A+YLMALT          +E  +GVC+VDV T ++ILGQFKDD +CSAL C+LSE+RP
Sbjct: 499 PDASYLMALTEGGESLTNPTAEHNFGVCLVDVATQKIILGQFKDDQDCSALSCLLSEMRP 558

Query: 358 VEIVKPAKLLSAETERVLVKHTRNPLVNELIPIVEFWDADKTLDQLKRIYRHTN------ 411
           VEI+KPAK+LS  TER +V+ TRNPLVN L+P+ EFWD++KT+ ++  IY+  N      
Sbjct: 559 VEIIKPAKVLSYATERTIVRQTRNPLVNNLVPLSEFWDSEKTIYEVGIIYKRINCQPSSA 618

Query: 412 ---DASVEDSGVDCLPGVLLELVKTGDDSRXXXXXXXXXXXXXKQAFLDERLLRFAQFE 467
              +  +   G   LP +L EL     +               +QAFLDE LLRFA+FE
Sbjct: 619 YSSEGKILGDGSSFLPKMLSELATEDKNGSLALSALGGAIYYLRQAFLDESLLRFAKFE 677


>AT3G24495.1 | Symbols: MSH7, MSH6-2, ATMSH7 | MUTS homolog 7 |
           chr3:8912418-8918086 REVERSE LENGTH=1109
          Length = 1109

 Score =  167 bits (422), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 93/256 (36%), Positives = 142/256 (55%), Gaps = 14/256 (5%)

Query: 128 ASERFALREAQKFRFLREDR-KDAKRRRPEDENYDSRTLYLPPDFLRSLSDGQKQWWEFK 186
             E+  + E  KF +L   R +DA RRRP+D  YD +TL++PPD  + +S  QKQ+W  K
Sbjct: 219 CGEKKEVNEGTKFEWLESSRIRDANRRRPDDPLYDRKTLHIPPDVFKKMSASQKQYWSVK 278

Query: 187 SKHMDKVLFFKMGKFYELFEMDAHVGAKELDLQYMKGEQPHC---GFPEKNFSMNVEKLA 243
           S++MD VLFFK+GKFYEL+E+DA +G KELD +        C   G  E      V+KL 
Sbjct: 279 SEYMDIVLFFKVGKFYELYELDAELGHKELDWKMTMSGVGKCRQVGISESGIDEAVQKLL 338

Query: 244 RKGYRVLVVEQTETPEQLELRRKQKGSKDKVVRREICAVVTKGTLMDGELLSANPEAAYL 303
            +GY+V  +EQ ET +Q + R       + ++ R++  V+T  T  +G +    P+A +L
Sbjct: 339 ARGYKVGRIEQLETSDQAKAR-----GANTIIPRKLVQVLTPSTASEGNI---GPDAVHL 390

Query: 304 MALTXXXXXXXXXXSERTYGVCIVDVTTSRVILGQFKDDSECSALCCILSEIRPVEIVKP 363
           +A+           +   YG   VD    R  +G   DD+ C+AL  +L ++ P E++  
Sbjct: 391 LAIKEIKMELQKCST--VYGFAFVDCAALRFWVGSISDDASCAALGALLMQVSPKEVLYD 448

Query: 364 AKLLSAETERVLVKHT 379
           +K LS E ++ L K+T
Sbjct: 449 SKGLSREAQKALRKYT 464


>AT4G25540.1 | Symbols: MSH3, ATMSH3 | homolog of DNA mismatch
           repair protein MSH3 | chr4:13042700-13048115 REVERSE
           LENGTH=1081
          Length = 1081

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 97/215 (45%), Gaps = 20/215 (9%)

Query: 179 QKQWWEFKSKHMDKVLFFKMGKFYELFEMDAHVGAKELDL-QYMKGEQPHCGFPEKNFSM 237
           ++Q  E KSK+ D VL  ++G  Y  F  DA + A+ L +  +M         P    + 
Sbjct: 108 EQQVVELKSKYPDVVLMVEVGYRYRFFGEDAEIAARVLGIYAHMDHNFMTASVPTFRLNF 167

Query: 238 NVEKLARKGYRVLVVEQTETPEQLELRRKQKGSKDKVVRREICAVVTKGTLMDGELLS-- 295
           +V +L   GY++ VV+QTET       +    ++     R + A+ TK TL   E +S  
Sbjct: 168 HVRRLVNAGYKIGVVKQTETAAI----KSHGANRTGPFFRGLSALYTKATLEAAEDISGG 223

Query: 296 ------ANPEAAYLMALTXXXXXXXXXXS--ERTY----GVCIVDVTTSRVILGQFKDDS 343
                    ++ +L+ +              E ++    GV  V+++T  V+  +F D+ 
Sbjct: 224 CGGEEGFGSQSNFLVCVVDERVKSETLGCGIEMSFDVRVGVVGVEISTGEVVYEEFNDNF 283

Query: 344 ECSALCCILSEIRPVEIVKPAKLLSAETERVLVKH 378
             S L  ++  + P E++   + LS +TE+ LV H
Sbjct: 284 MRSGLEAVILSLSPAELLL-GQPLSQQTEKFLVAH 317


>AT3G24320.1 | Symbols: MSH1, CHM1, ATMSH1, CHM | MUTL protein
           homolog 1 | chr3:8823229-8829571 REVERSE LENGTH=1118
          Length = 1118

 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 6/98 (6%)

Query: 174 SLSDGQKQW--WEFKSKHMDKVLFFKMGKFYELFEMDAHVGAKELDLQYMKGEQ----PH 227
           SL DG   W   +FKS+   +VL  ++G+FYE   +DA +  +   L    G +    P 
Sbjct: 118 SLKDGNLNWEMLQFKSRFPREVLLCRVGEFYEAIGIDACILVEYAGLNPFGGLRSDSIPK 177

Query: 228 CGFPEKNFSMNVEKLARKGYRVLVVEQTETPEQLELRR 265
            G P  N    ++ L R GY V +VE+ + P     R+
Sbjct: 178 AGCPIMNLRQTLDDLTRNGYSVCIVEEVQGPTPARSRK 215