Miyakogusa Predicted Gene

Lj1g3v4849460.2
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4849460.2 Non Chatacterized Hit- tr|K4C3Z0|K4C3Z0_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,31.46,5e-18,PAPA-1,PAPA-1-like conserved region; zf-HIT,Zinc
finger, HIT-type; PAPA-1-LIKE FAMILY PROTEIN / ZINC,CUFF.33440.2
         (628 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G56460.2 | Symbols:  | HIT zinc finger ;PAPA-1-like conserved...   250   2e-66
AT1G56460.1 | Symbols:  | HIT zinc finger ;PAPA-1-like conserved...   250   2e-66
AT2G47350.1 | Symbols:  | HIT zinc finger ;PAPA-1-like conserved...   245   7e-65
AT3G06660.1 | Symbols:  | PAPA-1-like family protein / zinc fing...   196   4e-50
AT2G47350.2 | Symbols:  | HIT zinc finger ;PAPA-1-like conserved...    91   3e-18

>AT1G56460.2 | Symbols:  | HIT zinc finger ;PAPA-1-like conserved
           region | chr1:21146765-21149468 FORWARD LENGTH=532
          Length = 532

 Score =  250 bits (639), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 129/185 (69%), Positives = 156/185 (84%), Gaps = 8/185 (4%)

Query: 389 KREMTLTTRQRALQSSRDACATGGSLIEFPNGLPPAPSRKQKEKLSEVDQQVKKAEAAQR 448
           K EMT+TTR+R+  S        G+LIEFP GLPPAP RK+KE   EVDQQ+KKAEAAQR
Sbjct: 356 KTEMTVTTRRRSGHS--------GNLIEFPRGLPPAPPRKRKENGLEVDQQLKKAEAAQR 407

Query: 449 RKMQVEKAARESEAEAIRKILGQDSSRKKREDKIKKRQEELAQEKAANAQKLPPNTIRYV 508
           RK+QVEKAARESEAEAIRKILGQDSSRKK+EDKIKKRQE+ A+EKAA++     +T+++V
Sbjct: 408 RKLQVEKAARESEAEAIRKILGQDSSRKKKEDKIKKRQEDKAKEKAADSIARRSDTVKWV 467

Query: 509 MRPTGTTLTFPEEMGLPAIFNSKPISYPPPREKCAGPSCTNPYKSRDSKTKVPLCSLQCY 568
           M P+GT +TFPEE+GLP+IFNS P SYPPPRE+CAGP CTNPYK RDS++ +PLCSL+CY
Sbjct: 468 MGPSGTIVTFPEELGLPSIFNSTPHSYPPPRERCAGPECTNPYKYRDSESNLPLCSLRCY 527

Query: 569 KAVQG 573
           KA++G
Sbjct: 528 KAIKG 532


>AT1G56460.1 | Symbols:  | HIT zinc finger ;PAPA-1-like conserved
           region | chr1:21146765-21149468 FORWARD LENGTH=502
          Length = 502

 Score =  250 bits (639), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 129/185 (69%), Positives = 156/185 (84%), Gaps = 8/185 (4%)

Query: 389 KREMTLTTRQRALQSSRDACATGGSLIEFPNGLPPAPSRKQKEKLSEVDQQVKKAEAAQR 448
           K EMT+TTR+R+  S        G+LIEFP GLPPAP RK+KE   EVDQQ+KKAEAAQR
Sbjct: 326 KTEMTVTTRRRSGHS--------GNLIEFPRGLPPAPPRKRKENGLEVDQQLKKAEAAQR 377

Query: 449 RKMQVEKAARESEAEAIRKILGQDSSRKKREDKIKKRQEELAQEKAANAQKLPPNTIRYV 508
           RK+QVEKAARESEAEAIRKILGQDSSRKK+EDKIKKRQE+ A+EKAA++     +T+++V
Sbjct: 378 RKLQVEKAARESEAEAIRKILGQDSSRKKKEDKIKKRQEDKAKEKAADSIARRSDTVKWV 437

Query: 509 MRPTGTTLTFPEEMGLPAIFNSKPISYPPPREKCAGPSCTNPYKSRDSKTKVPLCSLQCY 568
           M P+GT +TFPEE+GLP+IFNS P SYPPPRE+CAGP CTNPYK RDS++ +PLCSL+CY
Sbjct: 438 MGPSGTIVTFPEELGLPSIFNSTPHSYPPPRERCAGPECTNPYKYRDSESNLPLCSLRCY 497

Query: 569 KAVQG 573
           KA++G
Sbjct: 498 KAIKG 502


>AT2G47350.1 | Symbols:  | HIT zinc finger ;PAPA-1-like conserved
           region | chr2:19434588-19437045 FORWARD LENGTH=486
          Length = 486

 Score =  245 bits (625), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 140/279 (50%), Positives = 175/279 (62%), Gaps = 31/279 (11%)

Query: 296 IRYLEKLKTSKVSAVYRDEEELSKKHRKLSSVSNMENAAXXXXXXXXXXXXXXXXVXXXX 355
           IRYLEKLK  +VS    D E   +K    S ++N EN+                      
Sbjct: 234 IRYLEKLKYKRVSVCNEDTES-GRKQLTPSGITNGENSGKKKAVSEQASEDMDCA----- 287

Query: 356 XXXXXXXXXXXXXXXXXXXXXXXXESVDVLMDSKREMTLTTRQRALQSSRDACATGGSLI 415
                                   +  ++  D+KRE T+T+RQRAL S R       S I
Sbjct: 288 -----------------EEIETASDEKEIGNDNKRESTMTSRQRALASGR------SSAI 324

Query: 416 EFPNGLPPAPSRKQKEKLSEVDQQVKKAEAAQRRKMQVEKAARESEAEAIRKILGQDSSR 475
           +F +GLPP  SR++KE LSE++QQ+KKAEAAQRRK+Q+EKAARESE  AI+KILGQDSSR
Sbjct: 325 DFSDGLPPT-SRRKKETLSEMEQQLKKAEAAQRRKVQIEKAARESEEGAIKKILGQDSSR 383

Query: 476 KKREDKIKKRQEELAQEKAANAQKLPPNTIRYVMRPTGTTLTFPEEMGLPAIFNSKPISY 535
           KKR DKIKKR ++LAQEKAA  ++     IR +M P GTT++FP +  +P++F+ KP  Y
Sbjct: 384 KKRGDKIKKRLDDLAQEKAAQEERASTCCIRTIMGPNGTTVSFPIDK-VPSLFDPKPSGY 442

Query: 536 PPPREKCAGPSCTNPYKSRDSKTKVPLCSLQCYKAVQGK 574
           PPPRE C GPSCTNPYK RDSKTKVPLCSL+CYKAVQG+
Sbjct: 443 PPPRENCVGPSCTNPYKYRDSKTKVPLCSLKCYKAVQGQ 481


>AT3G06660.1 | Symbols:  | PAPA-1-like family protein / zinc finger
           (HIT type) family protein | chr3:2103060-2104776 FORWARD
           LENGTH=427
          Length = 427

 Score =  196 bits (498), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 118/188 (62%), Positives = 143/188 (76%), Gaps = 1/188 (0%)

Query: 395 TTRQRALQSSRD-ACATGGSLIEFPNGLPPAPSRKQKEKLSEVDQQVKKAEAAQRRKMQV 453
           TTR RALQS +D       S +EFP+GLP   S++ K+KLSEV+QQ KKAEAAQRR+MQ 
Sbjct: 239 TTRTRALQSGKDPHSVIRSSSLEFPDGLPCPSSKRPKQKLSEVEQQSKKAEAAQRRRMQC 298

Query: 454 EKAARESEAEAIRKILGQDSSRKKREDKIKKRQEELAQEKAANAQKLPPNTIRYVMRPTG 513
           EKAA+E+EAEAIRKILGQDS RKKRE+KIKK+QEE AQE+AA +  L  NTIR V+ P+G
Sbjct: 299 EKAAQEAEAEAIRKILGQDSGRKKREEKIKKQQEERAQERAARSSTLASNTIRLVIGPSG 358

Query: 514 TTLTFPEEMGLPAIFNSKPISYPPPREKCAGPSCTNPYKSRDSKTKVPLCSLQCYKAVQG 573
           TT+TF E++GLP IF     SYPPPREKC GP+C   YK RDSK+K+PLCSL CY A+Q 
Sbjct: 359 TTMTFSEDIGLPDIFKPVTYSYPPPREKCVGPNCEKAYKYRDSKSKLPLCSLGCYNAIQE 418

Query: 574 KTADEIVQ 581
           K    ++ 
Sbjct: 419 KMEQALIH 426


>AT2G47350.2 | Symbols:  | HIT zinc finger ;PAPA-1-like conserved
           region | chr2:19434588-19436281 FORWARD LENGTH=374
          Length = 374

 Score = 90.5 bits (223), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 65/167 (38%), Positives = 85/167 (50%), Gaps = 30/167 (17%)

Query: 296 IRYLEKLKTSKVSAVYRDEEELSKKHRKLSSVSNMENAAXXXXXXXXXXXXXXXXVXXXX 355
           IRYLEKLK  +VS    D E   +K    S ++N EN+                      
Sbjct: 234 IRYLEKLKYKRVSVCNEDTES-GRKQLTPSGITNGENSGKKKAVSEQASEDMDCA----- 287

Query: 356 XXXXXXXXXXXXXXXXXXXXXXXXESVDVLMDSKREMTLTTRQRALQSSRDACATGGSLI 415
                                   +  ++  D+KRE T+T+RQRAL S R       S I
Sbjct: 288 -----------------EEIETASDEKEIGNDNKRESTMTSRQRALASGR------SSAI 324

Query: 416 EFPNGLPPAPSRKQKEKLSEVDQQVKKAEAAQRRKMQVEKAARESEA 462
           +F +GLPP  SR++KE LSE++QQ+KKAEAAQRRK+Q+EKAARESE 
Sbjct: 325 DFSDGLPPT-SRRKKETLSEMEQQLKKAEAAQRRKVQIEKAARESEV 370