Miyakogusa Predicted Gene

Lj1g3v4838380.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4838380.1 Non Chatacterized Hit- tr|A5K2K1|A5K2K1_PLAVS
RNA-binding protein, putative OS=Plasmodium vivax
(str,37.66,5e-18,WW_DOMAIN_2,WW/Rsp5/WWP; RRM,RNA recognition motif
domain; RNA recognition motif,RNA recognition mot,CUFF.33435.1
         (378 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G47310.1 | Symbols:  | flowering time control protein-related...   187   1e-47
AT4G16280.4 | Symbols:  | RNA binding;abscisic acid binding | ch...   171   8e-43
AT4G16280.3 | Symbols: FCA | RNA binding;abscisic acid binding |...   170   1e-42
AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |...   170   1e-42
AT4G16280.1 | Symbols: FCA | RNA binding;abscisic acid binding |...    89   4e-18
AT1G03457.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    84   2e-16
AT1G03457.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    81   1e-15
AT4G03110.1 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding protein-...    72   8e-13
AT4G03110.2 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding protein-...    71   1e-12
AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2...    49   5e-06
AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2...    49   5e-06

>AT2G47310.1 | Symbols:  | flowering time control protein-related /
           FCA gamma-related | chr2:19423791-19426846 FORWARD
           LENGTH=512
          Length = 512

 Score =  187 bits (474), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 125/352 (35%), Positives = 169/352 (48%), Gaps = 79/352 (22%)

Query: 2   RQGSCFVKYSTFSEADRAIKALNNQYTFLGESCPVVVRFAD-RRERLGVRGPCRNLEKKD 60
           R   CF+KY    E + AI AL  Q+TF GE  PV VRFA+  RER+G   P +      
Sbjct: 150 RAAYCFIKYKKVEEGNAAIAALTEQFTFPGEMLPVKVRFAEAERERIGF-APVQ------ 202

Query: 61  PSEEAVLVD--KVFVNNINREASSKEIEEIFSPYGHVEDVFIATN-----RGYAFVKFSN 113
                 L D  K++V  +N++ +  E+ E+FS YG +ED+++A +     RGYAFV+FS 
Sbjct: 203 ------LPDNPKLYVRCLNKQTTKMEVNEVFSRYGIIEDIYMALDDMKICRGYAFVQFSC 256

Query: 114 REMALAAIKGLNRTYTMRGCDLPFIVRFAEPKKPKTGESRGNYVSGNANFGPCSQESVAW 173
           +EMALAAIK LN  +T+RG D P IVRFA+PKKP+ GE R  +                 
Sbjct: 257 KEMALAAIKALNGLFTIRGSDQPLIVRFADPKKPRLGEQRSTF----------------- 299

Query: 174 PLPNFGDPNTGGNIMPIAPHHSTVLHPQVASNMPNWQPGP--TVAQQPFLPQQAHSQLAS 231
                       N  P   H     H Q      N +P P   V    F  Q  H     
Sbjct: 300 ------------NTPPAMQHFDPNWHSQPYPQWENKEPAPPRVVQHHDFSSQPNH----- 342

Query: 232 MPLQSIQAPNFPSQPFITEV------QRQSHSTDSSIQNIEQQLSSQLPNQIGSNPNTVA 285
            P Q+ QA +   +P   ++      + Q   T S     + Q  S   N    + NTV+
Sbjct: 343 FPHQNTQAVSEVHKPLHQDIPPANFEKHQKSETASVETRSDGQKISSHSNAFHEDQNTVS 402

Query: 286 GSISPDLPTSPQDEEFPECDWSEHYCPDGDKYYYNSVTCESKWEKPEEYALY 337
                            ECDWSEH CP+G+KYY++ +TCES WEKP+EY++Y
Sbjct: 403 S----------------ECDWSEHTCPNGNKYYFHCITCESTWEKPDEYSMY 438



 Score = 55.1 bits (131), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 6/89 (6%)

Query: 68  VDKVFVNNINREASSKEIEEIFSPYGHVEDVFIATNR------GYAFVKFSNREMALAAI 121
           + K++V  I++ A+  +I ++F  YG+V ++ +  ++       Y F+K+   E   AAI
Sbjct: 109 IAKLYVAPISKTATEYDIRQVFEKYGNVTEIILPKDKMTGERAAYCFIKYKKVEEGNAAI 168

Query: 122 KGLNRTYTMRGCDLPFIVRFAEPKKPKTG 150
             L   +T  G  LP  VRFAE ++ + G
Sbjct: 169 AALTEQFTFPGEMLPVKVRFAEAERERIG 197


>AT4G16280.4 | Symbols:  | RNA binding;abscisic acid binding |
           chr4:9207164-9214187 REVERSE LENGTH=672
          Length = 672

 Score =  171 bits (433), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 92/185 (49%), Positives = 117/185 (63%), Gaps = 23/185 (12%)

Query: 2   RQGSCFVKYSTFSEADRAIKALNNQYTFLGESCPVVVRFAD-RRERLGVRGPCRNLEKKD 60
           +QG CFVKY+T  +ADRAI+AL+NQ T  G + PV VR+AD  RER+G            
Sbjct: 85  QQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGERERIGT----------- 133

Query: 61  PSEEAVLVDKVFVNNINREASSKEIEEIFSPYGHVEDVFIATN-----RGYAFVKFSNRE 115
                 L  K+FV ++N++A+ KE+EEIF  +GHVEDV++  +     RG  FVK+S++E
Sbjct: 134 ------LEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKE 187

Query: 116 MALAAIKGLNRTYTMRGCDLPFIVRFAEPKKPKTGESRGNYVSGNANFGPCSQESVAWPL 175
            A+AAI GLN TYTMRGC+ P IVRFAEPK+PK GESR          GP  Q S   P 
Sbjct: 188 TAMAAIDGLNGTYTMRGCNQPLIVRFAEPKRPKPGESREMAPPVGLGSGPRFQASGPRPT 247

Query: 176 PNFGD 180
            NFGD
Sbjct: 248 SNFGD 252



 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 22/35 (62%), Positives = 27/35 (77%)

Query: 303 ECDWSEHYCPDGDKYYYNSVTCESKWEKPEEYALY 337
           +C W+EH  PDG KYYYN +T ESKWEKPEE  ++
Sbjct: 519 KCTWTEHTSPDGFKYYYNGLTGESKWEKPEEMIVF 553


>AT4G16280.3 | Symbols: FCA | RNA binding;abscisic acid binding |
           chr4:9208564-9214412 REVERSE LENGTH=533
          Length = 533

 Score =  170 bits (431), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 92/185 (49%), Positives = 117/185 (63%), Gaps = 23/185 (12%)

Query: 2   RQGSCFVKYSTFSEADRAIKALNNQYTFLGESCPVVVRFAD-RRERLGVRGPCRNLEKKD 60
           +QG CFVKY+T  +ADRAI+AL+NQ T  G + PV VR+AD  RER+G            
Sbjct: 160 QQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGERERIGT----------- 208

Query: 61  PSEEAVLVDKVFVNNINREASSKEIEEIFSPYGHVEDVFIATN-----RGYAFVKFSNRE 115
                 L  K+FV ++N++A+ KE+EEIF  +GHVEDV++  +     RG  FVK+S++E
Sbjct: 209 ------LEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKE 262

Query: 116 MALAAIKGLNRTYTMRGCDLPFIVRFAEPKKPKTGESRGNYVSGNANFGPCSQESVAWPL 175
            A+AAI GLN TYTMRGC+ P IVRFAEPK+PK GESR          GP  Q S   P 
Sbjct: 263 TAMAAIDGLNGTYTMRGCNQPLIVRFAEPKRPKPGESREMAPPVGLGSGPRFQASGPRPT 322

Query: 176 PNFGD 180
            NFGD
Sbjct: 323 SNFGD 327


>AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |
           chr4:9207164-9214412 REVERSE LENGTH=747
          Length = 747

 Score =  170 bits (431), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 92/185 (49%), Positives = 117/185 (63%), Gaps = 23/185 (12%)

Query: 2   RQGSCFVKYSTFSEADRAIKALNNQYTFLGESCPVVVRFAD-RRERLGVRGPCRNLEKKD 60
           +QG CFVKY+T  +ADRAI+AL+NQ T  G + PV VR+AD  RER+G            
Sbjct: 160 QQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGERERIGT----------- 208

Query: 61  PSEEAVLVDKVFVNNINREASSKEIEEIFSPYGHVEDVFIATN-----RGYAFVKFSNRE 115
                 L  K+FV ++N++A+ KE+EEIF  +GHVEDV++  +     RG  FVK+S++E
Sbjct: 209 ------LEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKE 262

Query: 116 MALAAIKGLNRTYTMRGCDLPFIVRFAEPKKPKTGESRGNYVSGNANFGPCSQESVAWPL 175
            A+AAI GLN TYTMRGC+ P IVRFAEPK+PK GESR          GP  Q S   P 
Sbjct: 263 TAMAAIDGLNGTYTMRGCNQPLIVRFAEPKRPKPGESREMAPPVGLGSGPRFQASGPRPT 322

Query: 176 PNFGD 180
            NFGD
Sbjct: 323 SNFGD 327



 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 22/35 (62%), Positives = 27/35 (77%)

Query: 303 ECDWSEHYCPDGDKYYYNSVTCESKWEKPEEYALY 337
           +C W+EH  PDG KYYYN +T ESKWEKPEE  ++
Sbjct: 594 KCTWTEHTSPDGFKYYYNGLTGESKWEKPEEMIVF 628


>AT4G16280.1 | Symbols: FCA | RNA binding;abscisic acid binding |
           chr4:9207164-9210632 REVERSE LENGTH=505
          Length = 505

 Score = 89.4 bits (220), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 45/78 (57%), Positives = 52/78 (66%)

Query: 103 NRGYAFVKFSNREMALAAIKGLNRTYTMRGCDLPFIVRFAEPKKPKTGESRGNYVSGNAN 162
           +RG  FVK+S++E A+AAI GLN TYTMRGC+ P IVRFAEPK+PK GESR         
Sbjct: 8   SRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKRPKPGESREMAPPVGLG 67

Query: 163 FGPCSQESVAWPLPNFGD 180
            GP  Q S   P  NFGD
Sbjct: 68  SGPRFQASGPRPTSNFGD 85



 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 22/35 (62%), Positives = 27/35 (77%)

Query: 303 ECDWSEHYCPDGDKYYYNSVTCESKWEKPEEYALY 337
           +C W+EH  PDG KYYYN +T ESKWEKPEE  ++
Sbjct: 352 KCTWTEHTSPDGFKYYYNGLTGESKWEKPEEMIVF 386


>AT1G03457.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr1:861109-864019 REVERSE LENGTH=438
          Length = 438

 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 85/152 (55%), Gaps = 17/152 (11%)

Query: 3   QGSCFVKYSTFSEADRAIKALNNQYTFLGESCPVVVRFAD-RRERLGVRGPCRNLEKKDP 61
           +G CF+   T  +AD+ I + +N+ T  G S P+ V++AD   ERL V     N E    
Sbjct: 53  RGCCFLTCPTREDADKVINSFHNKKTLPGASSPLQVKYADGELERLDVLDCSCNPE---- 108

Query: 62  SEEAVLVDKVFVNNINREASSKEIEEIFSPYGHVEDVFIA-----TNRGYAFVKFSNREM 116
                   K+FV  + +  S  E++ +FS YG ++D+ I      T++G  F+K+ ++E 
Sbjct: 109 -------HKLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQ 161

Query: 117 ALAAIKGLNRTYTMRGCDLPFIVRFAEPKKPK 148
           A+AA++ LN  + M G ++P IV++A+ +K +
Sbjct: 162 AVAAMEALNGRHIMEGANVPLIVKWADTEKER 193


>AT1G03457.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr1:861109-864019 REVERSE LENGTH=429
          Length = 429

 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 82/151 (54%), Gaps = 24/151 (15%)

Query: 3   QGSCFVKYSTFSEADRAIKALNNQYTFLGESCPVVVRFADRRERLGVRGPCRNLEKKDPS 62
           +G CF+   T  +AD+ I + +N+ T  G S P+ V++AD        G    LE     
Sbjct: 53  RGCCFLTCPTREDADKVINSFHNKKTLPGASSPLQVKYAD--------GELERLE----- 99

Query: 63  EEAVLVDKVFVNNINREASSKEIEEIFSPYGHVEDVFIA-----TNRGYAFVKFSNREMA 117
                  K+FV  + +  S  E++ +FS YG ++D+ I      T++G  F+K+ ++E A
Sbjct: 100 ------HKLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQA 153

Query: 118 LAAIKGLNRTYTMRGCDLPFIVRFAEPKKPK 148
           +AA++ LN  + M G ++P IV++A+ +K +
Sbjct: 154 VAAMEALNGRHIMEGANVPLIVKWADTEKER 184


>AT4G03110.1 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding
           protein-defense related 1 | chr4:1376612-1379275 REVERSE
           LENGTH=441
          Length = 441

 Score = 71.6 bits (174), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 80/151 (52%), Gaps = 24/151 (15%)

Query: 3   QGSCFVKYSTFSEADRAIKALNNQYTFLGESCPVVVRFADRRERLGVRGPCRNLEKKDPS 62
           +G CF+   +  EAD+ + A +N+ T  G +  + V++AD        G    LE     
Sbjct: 59  RGCCFLLCPSREEADKLVNACHNKKTLPGANSLLQVKYAD--------GELERLE----- 105

Query: 63  EEAVLVDKVFVNNINREASSKEIEEIFSPYGHVEDVFIA-----TNRGYAFVKFSNREMA 117
                  K+FV  + +  S  E++ +FS YG ++D+ I      T++G AF+K+  +E A
Sbjct: 106 ------HKLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQA 159

Query: 118 LAAIKGLNRTYTMRGCDLPFIVRFAEPKKPK 148
           ++A++ +N  + M G  +P +V++A+ ++ +
Sbjct: 160 VSAMESINGKHKMEGSTVPLVVKWADTERER 190


>AT4G03110.2 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding
           protein-defense related 1 | chr4:1376710-1379275 REVERSE
           LENGTH=439
          Length = 439

 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 80/151 (52%), Gaps = 24/151 (15%)

Query: 3   QGSCFVKYSTFSEADRAIKALNNQYTFLGESCPVVVRFADRRERLGVRGPCRNLEKKDPS 62
           +G CF+   +  EAD+ + A +N+ T  G +  + V++AD        G    LE     
Sbjct: 59  RGCCFLLCPSREEADKLVNACHNKKTLPGANSLLQVKYAD--------GELERLE----- 105

Query: 63  EEAVLVDKVFVNNINREASSKEIEEIFSPYGHVEDVFIA-----TNRGYAFVKFSNREMA 117
                  K+FV  + +  S  E++ +FS YG ++D+ I      T++G AF+K+  +E A
Sbjct: 106 ------HKLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQA 159

Query: 118 LAAIKGLNRTYTMRGCDLPFIVRFAEPKKPK 148
           ++A++ +N  + M G  +P +V++A+ ++ +
Sbjct: 160 VSAMESINGKHKMEGSTVPLVVKWADTERER 190


>AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 |
           chr1:26990777-26993489 REVERSE LENGTH=682
          Length = 682

 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 87/197 (44%), Gaps = 24/197 (12%)

Query: 7   FVKYSTFSEADRAIKALNNQYTFLGESCPVVVRF---ADRRERLGVRGPCRNLEKKDPSE 63
           FV + +   A  A++ +N     LGE    V R    +DR E L      R  E++  S 
Sbjct: 283 FVNFVSPEAAAVAVEKMNG--ISLGEDVLYVGRAQKKSDREEEL-----RRKFEQERISR 335

Query: 64  -EAVLVDKVFVNNINREASSKEIEEIFSPYGHVEDVFIATN-----RGYAFVKFSNREMA 117
            E +    +++ N++   + ++++E+FS YG+V    +  N     RG+ FV +SN E A
Sbjct: 336 FEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEA 395

Query: 118 LAAIKGLNRTYTMRGCDLPFIVRFAEPKKPKTGESRGNYVSGNANFGPCSQESVAWPLPN 177
           L A+K +N     R    P  V  A+ K+ +    +  +    +   P +   V  P+  
Sbjct: 396 LLAMKEMNGKMIGRK---PLYVALAQRKEERQAHLQSLFTQIRS---PGTMSPVPSPMSG 449

Query: 178 FGDPNTGGNIMPIAPHH 194
           F     GG +    PHH
Sbjct: 450 FHHHPPGGPMS--GPHH 464


>AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 |
           chr1:26990777-26993489 REVERSE LENGTH=682
          Length = 682

 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 87/197 (44%), Gaps = 24/197 (12%)

Query: 7   FVKYSTFSEADRAIKALNNQYTFLGESCPVVVRF---ADRRERLGVRGPCRNLEKKDPSE 63
           FV + +   A  A++ +N     LGE    V R    +DR E L      R  E++  S 
Sbjct: 283 FVNFVSPEAAAVAVEKMNG--ISLGEDVLYVGRAQKKSDREEEL-----RRKFEQERISR 335

Query: 64  -EAVLVDKVFVNNINREASSKEIEEIFSPYGHVEDVFIATN-----RGYAFVKFSNREMA 117
            E +    +++ N++   + ++++E+FS YG+V    +  N     RG+ FV +SN E A
Sbjct: 336 FEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEA 395

Query: 118 LAAIKGLNRTYTMRGCDLPFIVRFAEPKKPKTGESRGNYVSGNANFGPCSQESVAWPLPN 177
           L A+K +N     R    P  V  A+ K+ +    +  +    +   P +   V  P+  
Sbjct: 396 LLAMKEMNGKMIGRK---PLYVALAQRKEERQAHLQSLFTQIRS---PGTMSPVPSPMSG 449

Query: 178 FGDPNTGGNIMPIAPHH 194
           F     GG +    PHH
Sbjct: 450 FHHHPPGGPMS--GPHH 464