Miyakogusa Predicted Gene

Lj1g3v4836270.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4836270.1 tr|Q0IPQ2|Q0IPQ2_ORYSJ Os12g0176200 protein
OS=Oryza sativa subsp. japonica GN=Os12g0176200 PE=4
SV=,41.45,3e-19,Q9SYJ1_ARATH_Q9SYJ1;,NIF system FeS cluster assembly,
NifU, C-terminal; NifU,NIF system FeS cluster
,NODE_35424_length_654_cov_231.689606.path2.1
         (212 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G01940.1 | Symbols: NFU1, AtCNFU1 | NFU domain protein 1 | ch...   230   4e-61
AT5G49940.1 | Symbols: NFU2, ATCNFU2 | NIFU-like protein 2 | chr...    82   3e-16
AT4G25910.1 | Symbols: NFU3, ATCNFU3 | NFU domain protein 3 | ch...    73   1e-13
AT5G49940.2 | Symbols: NFU2, ATCNFU2 | NIFU-like protein 2 | chr...    71   4e-13

>AT4G01940.1 | Symbols: NFU1, AtCNFU1 | NFU domain protein 1 |
           chr4:842265-843388 REVERSE LENGTH=231
          Length = 231

 Score =  230 bits (587), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 113/156 (72%), Positives = 126/156 (80%)

Query: 55  GLYSAAKIDLTAPNVDLVLEDVRPYLISDXXXXXXXXXXXXXISLKLQGACESCPSSTTT 114
           GLYSA   DLT  NVDLVLEDVRP+LISD             +SLKLQGAC SCPSS+TT
Sbjct: 76  GLYSAQTFDLTPQNVDLVLEDVRPFLISDGGNVDVVSVEDGVVSLKLQGACTSCPSSSTT 135

Query: 115 MKLGIERVLKEKFGDAVKDIVQVYDEEPKETTVEAVNNHLEILRPAIKNFGGSVQVLSVE 174
           M +GIERVLKEKFGDA+KDI QV+DEE K+ TVEAVN HL+ILRPAIKN+GGSV+VLSVE
Sbjct: 136 MTMGIERVLKEKFGDALKDIRQVFDEEVKQITVEAVNAHLDILRPAIKNYGGSVEVLSVE 195

Query: 175 GSDCHVDYVGPDSIGSGIKAAIKEKFPDILNVTFTT 210
           G DC V YVGP+SIG GI+AAIKEKF DI NVTFT+
Sbjct: 196 GEDCVVKYVGPESIGMGIQAAIKEKFKDISNVTFTS 231


>AT5G49940.1 | Symbols: NFU2, ATCNFU2 | NIFU-like protein 2 |
           chr5:20315464-20317228 FORWARD LENGTH=235
          Length = 235

 Score = 82.0 bits (201), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/154 (36%), Positives = 81/154 (52%), Gaps = 7/154 (4%)

Query: 61  KIDLTAPNVDLVLEDVRPYLISDXXXXXXXXXXXXXISLKLQGACESCPSSTTTMKLGIE 120
           ++ LT  NV+ VL+++RPYL+SD             + +KLQGAC SCPSST TMK+GIE
Sbjct: 82  EVPLTEENVESVLDEIRPYLMSDGGNVALHEIDGNIVRVKLQGACGSCPSSTMTMKMGIE 141

Query: 121 RVLKEKFGDAVKDIVQVYDEEPK-ETTVEAVNNHLEILRP-AIKNFGGSVQVLSVEGSDC 178
           R L EK  + V  +  + DEE   E   E +   LE +RP  I    GS+ ++ +E    
Sbjct: 142 RRLMEKIPEIVA-VEALPDEETGLELNEENIEKVLEEIRPYLIGTADGSLDLVEIEDPIV 200

Query: 179 HVDYVGPDSIGSGIKAAI----KEKFPDILNVTF 208
            +   GP +    ++ A+    +EK P I  V  
Sbjct: 201 KIRITGPAAGVMTVRVAVTQKLREKIPSIAAVQL 234


>AT4G25910.1 | Symbols: NFU3, ATCNFU3 | NFU domain protein 3 |
           chr4:13164128-13165094 FORWARD LENGTH=236
          Length = 236

 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 77/146 (52%), Gaps = 4/146 (2%)

Query: 62  IDLTAPNVDLVLEDVRPYLISDXXXXXXXXXXXXXISLKLQGACESCPSSTTTMKLGIER 121
           + LT  NV+ VL++VRP L++D             + LKLQGAC SCPSS+ T+K+GIE 
Sbjct: 82  MPLTEENVERVLDEVRPSLMADGGNVALHEIDGLVVVLKLQGACGSCPSSSMTLKMGIES 141

Query: 122 VLKEKFGDAVKDIVQVYDEEPK--ETTVEAVNNHLEILRPAIKNF-GGSVQVLSVEGSDC 178
            L++K  + +  + Q  + E    E   E +   L  LRP +    GG ++++ ++G   
Sbjct: 142 RLRDKIPE-IMSVEQFLESETGGLELNDENIEKVLSELRPYLSGTGGGGLELVEIDGYVV 200

Query: 179 HVDYVGPDSIGSGIKAAIKEKFPDIL 204
            V   GP +    ++ A+ +K  + +
Sbjct: 201 KVRLTGPAAGVMTVRVALTQKLRETI 226


>AT5G49940.2 | Symbols: NFU2, ATCNFU2 | NIFU-like protein 2 |
           chr5:20315464-20317067 FORWARD LENGTH=185
          Length = 185

 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/95 (43%), Positives = 57/95 (60%), Gaps = 4/95 (4%)

Query: 61  KIDLTAPNVDLVLEDVRPYLISDXXXXXXXXXXXXXISLKLQGACESCPSSTTTMKLGIE 120
           ++ LT  NV+ VL+++RPYL+SD             + +KLQGAC SCPSST TMK+GIE
Sbjct: 82  EVPLTEENVESVLDEIRPYLMSDGGNVALHEIDGNIVRVKLQGACGSCPSSTMTMKMGIE 141

Query: 121 RVLKEKFGDAVKDIVQVYDEEPKETTVEAVNNHLE 155
           R L EK    + +IV V     +ET +E    ++E
Sbjct: 142 RRLMEK----IPEIVAVEALPDEETGLELNEENIE 172