Miyakogusa Predicted Gene

Lj1g3v4830340.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4830340.1 Non Chatacterized Hit- tr|I1JQW4|I1JQW4_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.1891 PE=,87.43,0,Release
factor,NULL; no description,Peptide chain release factor; prfA:
peptide chain release factor,CUFF.33382.1
         (415 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G47020.1 | Symbols:  | Peptide chain release factor 1 | chr2:...   583   e-167
AT2G47020.2 | Symbols:  | Peptide chain release factor 1 | chr2:...   390   e-108
AT3G62910.1 | Symbols: APG3 | Peptide chain release factor 1 | c...   235   4e-62
AT1G56350.1 | Symbols:  | Peptide chain release factor 2 | chr1:...   151   6e-37
AT5G36170.1 | Symbols: HCF109, ATPRFB | high chlorophyll fluores...   125   5e-29
AT5G36170.2 | Symbols: HCF109, ATPRFB | high chlorophyll fluores...   125   5e-29
AT5G36170.3 | Symbols: HCF109, ATPRFB | high chlorophyll fluores...   105   4e-23
AT1G33330.1 | Symbols:  | Class I peptide chain release factor |...    55   1e-07

>AT2G47020.1 | Symbols:  | Peptide chain release factor 1 |
           chr2:19320090-19322279 REVERSE LENGTH=413
          Length = 413

 Score =  583 bits (1503), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 280/373 (75%), Positives = 333/373 (89%)

Query: 42  YSAEVQPQLSPDLLNIMEQRLSAIEHRSACLSNLLNQPEATPSEYARANKELRKLSGSVE 101
           Y+  ++PQLSPDL+ IM+QRLSAIEHR+A L  L+NQPE +P E++RANKELRKL  S+ 
Sbjct: 40  YTTGMEPQLSPDLIKIMDQRLSAIEHRNAVLQKLINQPEYSPEEFSRANKELRKLRDSML 99

Query: 102 LINELRAKQKEIDGLKTLMAESSEDKDMLSMATEEFGQAKEEERRLQNMLLKSLLPKDDA 161
           LIN+LRAKQKEIDGLK+L++ESS+DKDML +A  E  +A EEE+RLQ +LLKSLLPKD+A
Sbjct: 100 LINDLRAKQKEIDGLKSLVSESSDDKDMLDLAVGELDEAVEEEKRLQTLLLKSLLPKDEA 159

Query: 162 DERDSILEVRAGSGGEEASLFAMDIFKMYEKYAHKNGWKFEVVDIAQSDMKGYKEASAAI 221
           DERD ILEVRAG+GGEEASLFAMDIF+MYE+Y+ K GWKF++VDI +SDMKGYKEASAAI
Sbjct: 160 DERDCILEVRAGTGGEEASLFAMDIFRMYERYSQKKGWKFDIVDITESDMKGYKEASAAI 219

Query: 222 AGAGVFGKLKFESGIHRVQRVPVTEKLGRVHTSAVSVAILPQADEVDVQLKNEDLKVDTY 281
            GA V+GKLKFESGIHRVQR+P+TEK GR+HTSA+SVAILPQADEVDVQL+NEDL++DTY
Sbjct: 220 CGASVYGKLKFESGIHRVQRIPITEKSGRIHTSAISVAILPQADEVDVQLRNEDLRIDTY 279

Query: 282 RSGGSGGQHANTTNSAVRITHIPTGIIVAIQDERSQHMNXXXXXXXXXXXXYEMERLRLH 341
           RSGGSGGQHANTTNSAVRI H+PTG++V+IQDERSQHMN            YE+ERLR+ 
Sbjct: 280 RSGGSGGQHANTTNSAVRIIHLPTGMMVSIQDERSQHMNRAKALKVLCARLYEIERLRIQ 339

Query: 342 SNRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITYHSIDDVMQGENLDVFIDALLL 401
           S+RSKLRS+QIGSGDRS RIRTYNFPQGRVTDHRVGIT+H+I+D+MQGENLD+FIDALLL
Sbjct: 340 SSRSKLRSDQIGSGDRSGRIRTYNFPQGRVTDHRVGITHHAIEDMMQGENLDMFIDALLL 399

Query: 402 REEMDAVASFTSS 414
           R+EMDA+ASF+S+
Sbjct: 400 RQEMDAIASFSST 412


>AT2G47020.2 | Symbols:  | Peptide chain release factor 1 |
           chr2:19320439-19322002 REVERSE LENGTH=256
          Length = 256

 Score =  390 bits (1001), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 189/243 (77%), Positives = 223/243 (91%)

Query: 78  QPEATPSEYARANKELRKLSGSVELINELRAKQKEIDGLKTLMAESSEDKDMLSMATEEF 137
           QPE +P E++RANKELRKL  S+ LIN+LRAKQKEIDGLK+L++ESS+DKDML +A  E 
Sbjct: 11  QPEYSPEEFSRANKELRKLRDSMLLINDLRAKQKEIDGLKSLVSESSDDKDMLDLAVGEL 70

Query: 138 GQAKEEERRLQNMLLKSLLPKDDADERDSILEVRAGSGGEEASLFAMDIFKMYEKYAHKN 197
            +A EEE+RLQ +LLKSLLPKD+ADERD ILEVRAG+GGEEASLFAMDIF+MYE+Y+ K 
Sbjct: 71  DEAVEEEKRLQTLLLKSLLPKDEADERDCILEVRAGTGGEEASLFAMDIFRMYERYSQKK 130

Query: 198 GWKFEVVDIAQSDMKGYKEASAAIAGAGVFGKLKFESGIHRVQRVPVTEKLGRVHTSAVS 257
           GWKF++VDI +SDMKGYKEASAAI GA V+GKLKFESGIHRVQR+P+TEK GR+HTSA+S
Sbjct: 131 GWKFDIVDITESDMKGYKEASAAICGASVYGKLKFESGIHRVQRIPITEKSGRIHTSAIS 190

Query: 258 VAILPQADEVDVQLKNEDLKVDTYRSGGSGGQHANTTNSAVRITHIPTGIIVAIQDERSQ 317
           VAILPQADEVDVQL+NEDL++DTYRSGGSGGQHANTTNSAVRI H+PTG++V+IQDERSQ
Sbjct: 191 VAILPQADEVDVQLRNEDLRIDTYRSGGSGGQHANTTNSAVRIIHLPTGMMVSIQDERSQ 250

Query: 318 HMN 320
           HM+
Sbjct: 251 HMS 253


>AT3G62910.1 | Symbols: APG3 | Peptide chain release factor 1 |
           chr3:23257661-23260386 REVERSE LENGTH=422
          Length = 422

 Score =  235 bits (600), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 130/354 (36%), Positives = 203/354 (57%), Gaps = 22/354 (6%)

Query: 52  PDLLNIMEQRLSAIEHRSACLSNLLNQPEATP--SEYARANKELRKLSGSVELINELRAK 109
           P L+  ME    ++E     LS  L  P+     SEY +  + + +L   V +    +  
Sbjct: 55  PYLIRKME----SVEKTWKELSVKLADPDVVSNQSEYQKLAQSMSELDEVVTVFRRFKDC 110

Query: 110 QKEIDGLKTLMAESSEDKDMLSMATEEFGQAKEEERRLQNMLLKSLLPKDDADERDSILE 169
           +K++   K L  E+ +D+DM  M   E     +E   L+  L   LLP D  D R+ +LE
Sbjct: 111 EKQLLESKVLAKEAGDDEDMAEMIGSEINSLTKEIEELEKQLKVLLLPSDPLDARNILLE 170

Query: 170 VRAGSGGEEASLFAMDIFKMYEKYAHKNGWKFEVVDIAQSDMKGYKEASAAIAGAGVFGK 229
           VRAG+GG+EA+++  D+ +MY++Y+ ++ WKF +V  ++++  GYK     I G  V+ K
Sbjct: 171 VRAGTGGDEAAIWTGDLVRMYQRYSERSSWKFSMVSCSEAEHGGYKTCVMEIKGNRVYSK 230

Query: 230 LKFESGIHRVQRVPVTEKLGRVHTSAVSVAILPQADEVDVQLKNEDLKVDTYRSGGSGGQ 289
           LK+ESG+HRVQRVP TE  GRVHTS  +VAI+P+ADEV+V +  +D+++ + RSGG+GGQ
Sbjct: 231 LKYESGVHRVQRVPQTETQGRVHTSTATVAIMPEADEVEVVIDPKDIELTSARSGGAGGQ 290

Query: 290 HANTTNSAVRITHIPTGIIVAIQDERSQHMNXXXXXXXXXXXXYEMERLRLHSNRSKLRS 349
           + N   +A+ + H P+GI +   +ER+Q  N            YE   +++   + K+R+
Sbjct: 291 NVNKVETAIDLFHKPSGIRIFCTEERTQIRNKARAFQLLRAKLYE---IKVREQQEKIRN 347

Query: 350 E---QIGSGDRSERIRTYNFPQGRVTDHRVGITYHSIDDVMQGENLDVFIDALL 400
           E   Q+G+G RSE+IRTYN+   RVTDHR+ + +           L  F+D  L
Sbjct: 348 ERKSQVGTGARSEKIRTYNYKDSRVTDHRLKMNF----------ALTTFLDGAL 391


>AT1G56350.1 | Symbols:  | Peptide chain release factor 2 |
           chr1:21094840-21097826 FORWARD LENGTH=482
          Length = 482

 Score =  151 bits (382), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 103/301 (34%), Positives = 160/301 (53%), Gaps = 15/301 (4%)

Query: 112 EIDGLKTLMAESSEDKDMLSMATEEFGQAKEEE--------RRL-QNMLLKSLLPKDDAD 162
           ++ G+ T   E  E  DML +A EE     E E        RR+ +   L++LL  D+ D
Sbjct: 174 KMKGVMTFERELLEHIDMLKLAKEENDSELESETLKALIDMRRVSKEKELEALLSADN-D 232

Query: 163 ERDSILEVRAGSGGEEASLFAMDIFKMYEKYAHKNGWKFEVVDIAQSDMKGYKEASAAIA 222
                +EV+AG+GG E++ +A  + +MY+ +A +  +   VVD A  ++ G K A+  + 
Sbjct: 233 PCSCYIEVQAGAGGTESNDWAAMVMEMYKTWAQRRKFSVTVVDEAPGEIAGIKRATIKVN 292

Query: 223 GAGVFGKLKFESGIHRVQRVPVTEKLGRVHTSAVSVAILPQADE--VDVQLKNEDLKVDT 280
           G   +G  K E G+HR+ R+   +   R HTS  +VA++P   +    V++ + DL+++ 
Sbjct: 293 GEYAYGYAKAEVGVHRLVRISPFDSGKRRHTSFAAVAVIPILGDGSTRVEINDSDLRIER 352

Query: 281 YRSGGSGGQHANTTNSAVRITHIPTGIIVAIQDERSQHMNXXXXXXXXXXXXYEMERLRL 340
           +RSGG+GGQHANTT+SAVRI HIPTGI    Q+ERSQH N             ++E  R 
Sbjct: 353 FRSGGAGGQHANTTDSAVRIVHIPTGITATCQNERSQHSNKASAMAVLQSRLDQLEMARQ 412

Query: 341 HSNRSKLRSEQIGSGDRSERIRTYNF-PQGRVTDHRVGITYHSIDDVMQGENLDVFIDAL 399
            +  ++  ++ +       +IRTY   P   V D R        D V++G+ LD FI + 
Sbjct: 413 TAMNAQ-HTQSLTEISWGNQIRTYVLHPYRMVKDLRTNYEVSDPDSVLEGD-LDGFILSF 470

Query: 400 L 400
           L
Sbjct: 471 L 471


>AT5G36170.1 | Symbols: HCF109, ATPRFB | high chlorophyll
           fluorescent 109 | chr5:14236083-14237974 REVERSE
           LENGTH=456
          Length = 456

 Score =  125 bits (315), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 97/320 (30%), Positives = 153/320 (47%), Gaps = 16/320 (5%)

Query: 103 INELRAKQKEIDGLKTLMAESSE---------DKDMLSMATEEFGQAKEEERRLQNMLLK 153
           +N+L+ + + +   KT M E +E         D   +S+  E  G  KE  + L    L 
Sbjct: 137 LNDLKDRMRLLSEFKT-MVEDAETIVKLTEEMDSTDVSLLEEAMGIIKELNKSLDKFELT 195

Query: 154 SLLPKDDADERDSILEVRAGSGGEEASLFAMDIFKMYEKYAHKNGWKFEVVDIAQSDMKG 213
            LL     D+  +++ + AG+GG +A  +A  + +MY ++  K  +K +VV+++  +  G
Sbjct: 196 QLL-SGPYDKEGAVVYITAGAGGTDAQDWADMLLRMYMRWGEKQRYKTKVVEMSNGEEAG 254

Query: 214 YKEASAAIAGAGVFGKLKFESGIHRVQRVPVTEKLGRVHTSAVSVAILPQADE--VDVQL 271
            K A+  I G   +G +  E G HR+ R       G   TS   V ++P   E  V +++
Sbjct: 255 IKSATLEIEGRYAYGYISGEKGTHRIVRQSPFNSKGLRQTSFSGVEVMPLLPEEAVGIEI 314

Query: 272 KNEDLKVDTYRSGGSGGQHANTTNSAVRITHIPTGIIVAIQDERSQHMNXXXXXXXXXXX 331
             EDL +   R+GG GGQ+ N   +AVRITHIPTG+ V   +ERSQ  N           
Sbjct: 315 PEEDLDISFTRAGGKGGQNVNKVETAVRITHIPTGVAVRCTEERSQLANKTRALIRLKAK 374

Query: 332 XYEMERLRLHSNRSKLRSEQIGSGDRSERIRTYNF-PQGRVTDHRVGITYHSIDDVMQGE 390
              +   +  +   ++R + +   +  ++IR Y F P   V D R G     I  VM G 
Sbjct: 375 LMVIAEEQRATEIKEIRGDAV-KAEWGQQIRNYVFHPYKLVKDVRTGHETSDITSVMDG- 432

Query: 391 NLDVFIDALLLREEMDAVAS 410
           +LD FI A L  +   A+AS
Sbjct: 433 DLDPFIKAYLKHKYTLAMAS 452


>AT5G36170.2 | Symbols: HCF109, ATPRFB | high chlorophyll
           fluorescent 109 | chr5:14236083-14237974 REVERSE
           LENGTH=455
          Length = 455

 Score =  125 bits (314), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 97/320 (30%), Positives = 153/320 (47%), Gaps = 16/320 (5%)

Query: 103 INELRAKQKEIDGLKTLMAESSE---------DKDMLSMATEEFGQAKEEERRLQNMLLK 153
           +N+L+ + + +   KT M E +E         D   +S+  E  G  KE  + L    L 
Sbjct: 136 LNDLKDRMRLLSEFKT-MVEDAETIVKLTEEMDSTDVSLLEEAMGIIKELNKSLDKFELT 194

Query: 154 SLLPKDDADERDSILEVRAGSGGEEASLFAMDIFKMYEKYAHKNGWKFEVVDIAQSDMKG 213
            LL     D+  +++ + AG+GG +A  +A  + +MY ++  K  +K +VV+++  +  G
Sbjct: 195 QLL-SGPYDKEGAVVYITAGAGGTDAQDWADMLLRMYMRWGEKQRYKTKVVEMSNGEEAG 253

Query: 214 YKEASAAIAGAGVFGKLKFESGIHRVQRVPVTEKLGRVHTSAVSVAILPQADE--VDVQL 271
            K A+  I G   +G +  E G HR+ R       G   TS   V ++P   E  V +++
Sbjct: 254 IKSATLEIEGRYAYGYISGEKGTHRIVRQSPFNSKGLRQTSFSGVEVMPLLPEEAVGIEI 313

Query: 272 KNEDLKVDTYRSGGSGGQHANTTNSAVRITHIPTGIIVAIQDERSQHMNXXXXXXXXXXX 331
             EDL +   R+GG GGQ+ N   +AVRITHIPTG+ V   +ERSQ  N           
Sbjct: 314 PEEDLDISFTRAGGKGGQNVNKVETAVRITHIPTGVAVRCTEERSQLANKTRALIRLKAK 373

Query: 332 XYEMERLRLHSNRSKLRSEQIGSGDRSERIRTYNF-PQGRVTDHRVGITYHSIDDVMQGE 390
              +   +  +   ++R + +   +  ++IR Y F P   V D R G     I  VM G 
Sbjct: 374 LMVIAEEQRATEIKEIRGDAV-KAEWGQQIRNYVFHPYKLVKDVRTGHETSDITSVMDG- 431

Query: 391 NLDVFIDALLLREEMDAVAS 410
           +LD FI A L  +   A+AS
Sbjct: 432 DLDPFIKAYLKHKYTLAMAS 451


>AT5G36170.3 | Symbols: HCF109, ATPRFB | high chlorophyll
           fluorescent 109 | chr5:14236297-14237974 REVERSE
           LENGTH=391
          Length = 391

 Score =  105 bits (263), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 112/222 (50%), Gaps = 13/222 (5%)

Query: 103 INELRAKQKEIDGLKTLMAESSE---------DKDMLSMATEEFGQAKEEERRLQNMLLK 153
           +N+L+ + + +   KT M E +E         D   +S+  E  G  KE  + L    L 
Sbjct: 137 LNDLKDRMRLLSEFKT-MVEDAETIVKLTEEMDSTDVSLLEEAMGIIKELNKSLDKFELT 195

Query: 154 SLLPKDDADERDSILEVRAGSGGEEASLFAMDIFKMYEKYAHKNGWKFEVVDIAQSDMKG 213
            LL     D+  +++ + AG+GG +A  +A  + +MY ++  K  +K +VV+++  +  G
Sbjct: 196 QLL-SGPYDKEGAVVYITAGAGGTDAQDWADMLLRMYMRWGEKQRYKTKVVEMSNGEEAG 254

Query: 214 YKEASAAIAGAGVFGKLKFESGIHRVQRVPVTEKLGRVHTSAVSVAILPQADE--VDVQL 271
            K A+  I G   +G +  E G HR+ R       G   TS   V ++P   E  V +++
Sbjct: 255 IKSATLEIEGRYAYGYISGEKGTHRIVRQSPFNSKGLRQTSFSGVEVMPLLPEEAVGIEI 314

Query: 272 KNEDLKVDTYRSGGSGGQHANTTNSAVRITHIPTGIIVAIQD 313
             EDL +   R+GG GGQ+ N   +AVRITHIPTG+ V   D
Sbjct: 315 PEEDLDISFTRAGGKGGQNVNKVETAVRITHIPTGVAVRCTD 356


>AT1G33330.1 | Symbols:  | Class I peptide chain release factor |
           chr1:12084968-12086238 FORWARD LENGTH=257
          Length = 257

 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 33/47 (70%)

Query: 274 EDLKVDTYRSGGSGGQHANTTNSAVRITHIPTGIIVAIQDERSQHMN 320
           +  +++T+R  G GGQH N  +SAVR+ H+PTGI+    ++RSQH N
Sbjct: 96  KQCRLETFRVSGPGGQHRNKRDSAVRLKHLPTGIVAQAVEDRSQHKN 142