Miyakogusa Predicted Gene

Lj1g3v4830290.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4830290.1 tr|C1FIY8|C1FIY8_MICSR Predicted protein
OS=Micromonas sp. (strain RCC299 / NOUM17) GN=MICPUN_63177
,42.27,0.0000000005,Nefa_Nip30_N,NEFA-interacting nuclear protein
NIP30, N-terminal; SUBFAMILY NOT NAMED,NULL; NEFA-INTE,CUFF.33408.1
         (212 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G62140.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: NEFA-inter...   238   2e-63

>AT3G62140.1 | Symbols:  | CONTAINS InterPro DOMAIN/s:
           NEFA-interacting nuclear protein NIP30, N-terminal
           (InterPro:IPR019331); Has 398 Blast hits to 395 proteins
           in 139 species: Archae - 0; Bacteria - 6; Metazoa - 193;
           Fungi - 83; Plants - 36; Viruses - 0; Other Eukaryotes -
           80 (source: NCBI BLink). | chr3:23007277-23008626
           FORWARD LENGTH=214
          Length = 214

 Score =  238 bits (607), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 130/214 (60%), Positives = 160/214 (74%), Gaps = 9/214 (4%)

Query: 4   DDTDLPIRIMNFVSEDQLAESKRTRGERVEDGTAHRDRPLYEILKEQKDKKDAEFNERFK 63
           D+T+ PIR++NFVSE+QL ESK+ RGERVEDGT  RDR LYEILKE KDKKDAEFNERFK
Sbjct: 3   DETEKPIRLLNFVSEEQLDESKKERGERVEDGTFQRDRALYEILKENKDKKDAEFNERFK 62

Query: 64  HRPPKALDEDETEFLDNYETTRREYEQKVADEEAQQIRSFQAAVAVQSNTVHEIKEN--- 120
           HRPPKALDEDETEFLD  E ++REYE+++A+EE +Q+R+FQAAVA +S  +HE KE    
Sbjct: 63  HRPPKALDEDETEFLDKLEMSKREYERQLANEEDEQLRNFQAAVAARSAILHEPKEAALP 122

Query: 121 PPLPIVQEEKPAGKRNPASRPLSMIIKVKPQTKKAKVDEGNAEEVSKARTTPVNDNNKSL 180
           PP P+ +E+KP GKRNPA+RP   IIKVKPQ KKAK  E   +E+        + +  SL
Sbjct: 123 PPAPVTKEQKPIGKRNPATRPFKAIIKVKPQPKKAKATEKEEKEIPGNGKPASHIDQASL 182

Query: 181 ELVQS-LNGEADKSHEIAQTG--LVSYSDESDDD 211
           + V+  + G   K+ E  QTG  LVSYSDES+DD
Sbjct: 183 DSVKGNVTG---KTTEGLQTGLALVSYSDESEDD 213