Miyakogusa Predicted Gene

Lj1g3v4830100.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4830100.3 tr|A8IDN7|A8IDN7_CHLRE Pre-mRNA splicing factor
PRP38 family protein OS=Chlamydomonas reinhardtii
GN,52.81,8e-19,PRP38,Pre-mRNA-splicing factor 38;
UNCHARACTERIZED,Pre-mRNA-splicing factor 38,CUFF.33367.3
         (88 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G37370.2 | Symbols: ATSRL1 | PRP38 family protein | chr5:1481...   166   4e-42
AT5G37370.1 | Symbols: ATSRL1 | PRP38 family protein | chr5:1481...   166   4e-42
AT5G37370.3 | Symbols: ATSRL1 | PRP38 family protein | chr5:1481...   159   3e-40
AT5G37370.4 | Symbols: ATSRL1 | PRP38 family protein | chr5:1481...    75   7e-15

>AT5G37370.2 | Symbols: ATSRL1 | PRP38 family protein |
          chr5:14812845-14815988 REVERSE LENGTH=385
          Length = 385

 Score =  166 bits (419), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 75/87 (86%), Positives = 80/87 (91%)

Query: 2  EIQTSGRPIGSLLEKVLCMIILSSDYFKELYRLKTYHEVIDEIYNQVDHVEPWMTGNCRG 61
          EIQ++GR   SLLEKVL M ILSSDYFKELY LKTYHEVIDEIYNQV+HVEPWM GNCRG
Sbjct: 3  EIQSNGRAYESLLEKVLSMNILSSDYFKELYGLKTYHEVIDEIYNQVNHVEPWMGGNCRG 62

Query: 62 PSTSFCLLYKFFTMKLTVKQMHGLLKH 88
          PST++CLLYKFFTMKLTVKQMHGLLKH
Sbjct: 63 PSTAYCLLYKFFTMKLTVKQMHGLLKH 89


>AT5G37370.1 | Symbols: ATSRL1 | PRP38 family protein |
          chr5:14812845-14815988 REVERSE LENGTH=393
          Length = 393

 Score =  166 bits (419), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 75/87 (86%), Positives = 80/87 (91%)

Query: 2  EIQTSGRPIGSLLEKVLCMIILSSDYFKELYRLKTYHEVIDEIYNQVDHVEPWMTGNCRG 61
          EIQ++GR   SLLEKVL M ILSSDYFKELY LKTYHEVIDEIYNQV+HVEPWM GNCRG
Sbjct: 3  EIQSNGRAYESLLEKVLSMNILSSDYFKELYGLKTYHEVIDEIYNQVNHVEPWMGGNCRG 62

Query: 62 PSTSFCLLYKFFTMKLTVKQMHGLLKH 88
          PST++CLLYKFFTMKLTVKQMHGLLKH
Sbjct: 63 PSTAYCLLYKFFTMKLTVKQMHGLLKH 89


>AT5G37370.3 | Symbols: ATSRL1 | PRP38 family protein |
          chr5:14815239-14815988 REVERSE LENGTH=111
          Length = 111

 Score =  159 bits (402), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 75/87 (86%), Positives = 80/87 (91%)

Query: 2  EIQTSGRPIGSLLEKVLCMIILSSDYFKELYRLKTYHEVIDEIYNQVDHVEPWMTGNCRG 61
          EIQ++GR   SLLEKVL M ILSSDYFKELY LKTYHEVIDEIYNQV+HVEPWM GNCRG
Sbjct: 3  EIQSNGRAYESLLEKVLSMNILSSDYFKELYGLKTYHEVIDEIYNQVNHVEPWMGGNCRG 62

Query: 62 PSTSFCLLYKFFTMKLTVKQMHGLLKH 88
          PST++CLLYKFFTMKLTVKQMHGLLKH
Sbjct: 63 PSTAYCLLYKFFTMKLTVKQMHGLLKH 89


>AT5G37370.4 | Symbols: ATSRL1 | PRP38 family protein |
          chr5:14812845-14815823 REVERSE LENGTH=338
          Length = 338

 Score = 75.5 bits (184), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 31/34 (91%), Positives = 33/34 (97%)

Query: 55 MTGNCRGPSTSFCLLYKFFTMKLTVKQMHGLLKH 88
          M GNCRGPST++CLLYKFFTMKLTVKQMHGLLKH
Sbjct: 1  MGGNCRGPSTAYCLLYKFFTMKLTVKQMHGLLKH 34