Miyakogusa Predicted Gene

Lj1g3v4830100.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4830100.2 Non Chatacterized Hit- tr|G3PQV1|G3PQV1_GASAC
Uncharacterized protein OS=Gasterosteus aculeatus
GN=P,55.79,2e-19,UNCHARACTERIZED,Pre-mRNA-splicing factor 38;
PRP38,Pre-mRNA-splicing factor 38,CUFF.33367.2
         (101 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G37370.2 | Symbols: ATSRL1 | PRP38 family protein | chr5:1481...   180   2e-46
AT5G37370.1 | Symbols: ATSRL1 | PRP38 family protein | chr5:1481...   180   2e-46
AT5G37370.3 | Symbols: ATSRL1 | PRP38 family protein | chr5:1481...   177   2e-45
AT5G37370.4 | Symbols: ATSRL1 | PRP38 family protein | chr5:1481...    91   1e-19

>AT5G37370.2 | Symbols: ATSRL1 | PRP38 family protein |
          chr5:14812845-14815988 REVERSE LENGTH=385
          Length = 385

 Score =  180 bits (456), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 82/96 (85%), Positives = 88/96 (91%)

Query: 2  EIQTSGRPIGSLLEKVLCMIILSSDYFKELYRLKTYHEVIDEIYNQVDHVEPWMTGNCRG 61
          EIQ++GR   SLLEKVL M ILSSDYFKELY LKTYHEVIDEIYNQV+HVEPWM GNCRG
Sbjct: 3  EIQSNGRAYESLLEKVLSMNILSSDYFKELYGLKTYHEVIDEIYNQVNHVEPWMGGNCRG 62

Query: 62 PSTSFCLLYKFFTMKLTVKQMHGLLKHPDSPYIRAI 97
          PST++CLLYKFFTMKLTVKQMHGLLKH DSPYIRA+
Sbjct: 63 PSTAYCLLYKFFTMKLTVKQMHGLLKHTDSPYIRAV 98


>AT5G37370.1 | Symbols: ATSRL1 | PRP38 family protein |
          chr5:14812845-14815988 REVERSE LENGTH=393
          Length = 393

 Score =  180 bits (456), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 82/96 (85%), Positives = 88/96 (91%)

Query: 2  EIQTSGRPIGSLLEKVLCMIILSSDYFKELYRLKTYHEVIDEIYNQVDHVEPWMTGNCRG 61
          EIQ++GR   SLLEKVL M ILSSDYFKELY LKTYHEVIDEIYNQV+HVEPWM GNCRG
Sbjct: 3  EIQSNGRAYESLLEKVLSMNILSSDYFKELYGLKTYHEVIDEIYNQVNHVEPWMGGNCRG 62

Query: 62 PSTSFCLLYKFFTMKLTVKQMHGLLKHPDSPYIRAI 97
          PST++CLLYKFFTMKLTVKQMHGLLKH DSPYIRA+
Sbjct: 63 PSTAYCLLYKFFTMKLTVKQMHGLLKHTDSPYIRAV 98


>AT5G37370.3 | Symbols: ATSRL1 | PRP38 family protein |
          chr5:14815239-14815988 REVERSE LENGTH=111
          Length = 111

 Score =  177 bits (448), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 83/97 (85%), Positives = 88/97 (90%)

Query: 2  EIQTSGRPIGSLLEKVLCMIILSSDYFKELYRLKTYHEVIDEIYNQVDHVEPWMTGNCRG 61
          EIQ++GR   SLLEKVL M ILSSDYFKELY LKTYHEVIDEIYNQV+HVEPWM GNCRG
Sbjct: 3  EIQSNGRAYESLLEKVLSMNILSSDYFKELYGLKTYHEVIDEIYNQVNHVEPWMGGNCRG 62

Query: 62 PSTSFCLLYKFFTMKLTVKQMHGLLKHPDSPYIRAIL 98
          PST++CLLYKFFTMKLTVKQMHGLLKH DSPYIRAI 
Sbjct: 63 PSTAYCLLYKFFTMKLTVKQMHGLLKHTDSPYIRAIF 99


>AT5G37370.4 | Symbols: ATSRL1 | PRP38 family protein |
          chr5:14812845-14815823 REVERSE LENGTH=338
          Length = 338

 Score = 91.3 bits (225), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 38/43 (88%), Positives = 41/43 (95%)

Query: 55 MTGNCRGPSTSFCLLYKFFTMKLTVKQMHGLLKHPDSPYIRAI 97
          M GNCRGPST++CLLYKFFTMKLTVKQMHGLLKH DSPYIRA+
Sbjct: 1  MGGNCRGPSTAYCLLYKFFTMKLTVKQMHGLLKHTDSPYIRAV 43