Miyakogusa Predicted Gene

Lj1g3v4804100.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4804100.1 tr|C1MUT1|C1MUT1_MICPC Mitochondrial tRNA import
complex OS=Micromonas pusilla (strain CCMP1545)
GN=,46.72,0.000000000003,UCR_14kD,Cytochrome d ubiquinol oxidase,
14kDa subunit; Q84M34_ORYSA_Q84M34;,Cytochrome d ubiquinol
,CUFF.33292.1
         (122 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G32470.1 | Symbols:  | Cytochrome bd ubiquinol oxidase, 14kDa...   162   4e-41
AT5G25450.1 | Symbols:  | Cytochrome bd ubiquinol oxidase, 14kDa...   160   2e-40
AT4G32470.2 | Symbols:  | Cytochrome bd ubiquinol oxidase, 14kDa...   128   8e-31
AT5G25450.2 | Symbols:  | Cytochrome bd ubiquinol oxidase, 14kDa...   122   5e-29

>AT4G32470.1 | Symbols:  | Cytochrome bd ubiquinol oxidase, 14kDa
           subunit | chr4:15669641-15671095 REVERSE LENGTH=122
          Length = 122

 Score =  162 bits (410), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 81/122 (66%), Positives = 93/122 (76%)

Query: 1   MASLLQSFIDPKKNWLARVHMKTISQXXXXXXXXXXXXXXXXXXXXIKEALNRLPKEVVD 60
           MASLL++FIDPKKN+LAR+HMK IS                     IKEA+NRLP+EVVD
Sbjct: 1   MASLLKAFIDPKKNFLARMHMKAISTRLRRYGLRYDDLYDQYYSMDIKEAMNRLPREVVD 60

Query: 61  ARHARLKRAIDLSMKHEYLPEDLQAMQTPFRSYLQDMLTFVKKERAEREALGGLPLYQRT 120
           AR+ RLKRA+DLSMKHEYLP+DLQA+QTPFR YLQDML  V++E  EREALG LPLYQRT
Sbjct: 61  ARNQRLKRAMDLSMKHEYLPKDLQAVQTPFRGYLQDMLALVERESKEREALGALPLYQRT 120

Query: 121 LP 122
           LP
Sbjct: 121 LP 122


>AT5G25450.1 | Symbols:  | Cytochrome bd ubiquinol oxidase, 14kDa
           subunit | chr5:8857036-8857849 FORWARD LENGTH=122
          Length = 122

 Score =  160 bits (405), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 78/122 (63%), Positives = 93/122 (76%)

Query: 1   MASLLQSFIDPKKNWLARVHMKTISQXXXXXXXXXXXXXXXXXXXXIKEALNRLPKEVVD 60
           MAS LQ  +DP+KN+LAR+HMK++S                     IKEALNRLP+E+VD
Sbjct: 1   MASFLQRLVDPRKNFLARMHMKSVSNRLRRYGLRYDDLYDPLYDLDIKEALNRLPREIVD 60

Query: 61  ARHARLKRAIDLSMKHEYLPEDLQAMQTPFRSYLQDMLTFVKKERAEREALGGLPLYQRT 120
           AR+ RL RA+DLSMKHEYLP++LQA+QTPFRSYLQDML  VK+ERAEREALG LPLYQRT
Sbjct: 61  ARNQRLMRAMDLSMKHEYLPDNLQAVQTPFRSYLQDMLALVKRERAEREALGALPLYQRT 120

Query: 121 LP 122
           +P
Sbjct: 121 IP 122


>AT4G32470.2 | Symbols:  | Cytochrome bd ubiquinol oxidase, 14kDa
           subunit | chr4:15669705-15671095 REVERSE LENGTH=101
          Length = 101

 Score =  128 bits (322), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 64/100 (64%), Positives = 74/100 (74%)

Query: 1   MASLLQSFIDPKKNWLARVHMKTISQXXXXXXXXXXXXXXXXXXXXIKEALNRLPKEVVD 60
           MASLL++FIDPKKN+LAR+HMK IS                     IKEA+NRLP+EVVD
Sbjct: 1   MASLLKAFIDPKKNFLARMHMKAISTRLRRYGLRYDDLYDQYYSMDIKEAMNRLPREVVD 60

Query: 61  ARHARLKRAIDLSMKHEYLPEDLQAMQTPFRSYLQDMLTF 100
           AR+ RLKRA+DLSMKHEYLP+DLQA+QTPFR YLQDML  
Sbjct: 61  ARNQRLKRAMDLSMKHEYLPKDLQAVQTPFRGYLQDMLAL 100


>AT5G25450.2 | Symbols:  | Cytochrome bd ubiquinol oxidase, 14kDa
           subunit | chr5:8857036-8857849 FORWARD LENGTH=106
          Length = 106

 Score =  122 bits (306), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 65/122 (53%), Positives = 79/122 (64%), Gaps = 16/122 (13%)

Query: 1   MASLLQSFIDPKKNWLARVHMKTISQXXXXXXXXXXXXXXXXXXXXIKEALNRLPKEVVD 60
           MAS LQ  +DP+KN+LAR+HMK++S                     IKEALNRLP+E+VD
Sbjct: 1   MASFLQRLVDPRKNFLARMHMKSVSNRLRRYGLRYDDLYDPLYDLDIKEALNRLPREIVD 60

Query: 61  ARHARLKRAIDLSMKHEYLPEDLQAMQTPFRSYLQDMLTFVKKERAEREALGGLPLYQRT 120
           AR+ RL RA+DLSMKHEYLP++LQ                VK+ERAEREALG LPLYQRT
Sbjct: 61  ARNQRLMRAMDLSMKHEYLPDNLQ----------------VKRERAEREALGALPLYQRT 104

Query: 121 LP 122
           +P
Sbjct: 105 IP 106