Miyakogusa Predicted Gene

Lj1g3v4790750.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4790750.1 Non Chatacterized Hit- tr|I3T6C3|I3T6C3_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,99.47,0,NAD(P)-binding Rossmann-fold domains,NULL; seg,NULL;
NAD_binding_10,NULL; no description,NAD(P)-bind,CUFF.33274.1
         (483 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G09340.1 | Symbols: CRB, CSP41B, HIP1.3 | chloroplast RNA bin...   587   e-168
AT3G63140.1 | Symbols: CSP41A | chloroplast stem-loop binding pr...   181   1e-45

>AT1G09340.1 | Symbols: CRB, CSP41B, HIP1.3 | chloroplast RNA
           binding | chr1:3015473-3018035 FORWARD LENGTH=378
          Length = 378

 Score =  587 bits (1513), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 291/376 (77%), Positives = 324/376 (86%), Gaps = 1/376 (0%)

Query: 107 MARLVVPQQNQLSFSPLASSLSDFSGTRLQTQIQFRRKAWQPKG-FHVSASSTKKILIMG 165
           MA++++ QQ+Q SFS L SSLSDF+G +L  Q+Q++RK  QPKG  +VSASS KKILIMG
Sbjct: 1   MAKMMMLQQHQPSFSLLTSSLSDFNGAKLHLQVQYKRKVHQPKGALYVSASSEKKILIMG 60

Query: 166 GTRFIGVFLSRLLVKEGHQVTLFTRGKAPITQQLPGEXXXXXXXXXXKIKHLKGDRKDYD 225
           GTRFIG+FLSR+LVKEGHQVTLFTRGK+PI +QLPGE          KI HLKGDRKDYD
Sbjct: 61  GTRFIGLFLSRILVKEGHQVTLFTRGKSPIAKQLPGESDQDFADFSSKILHLKGDRKDYD 120

Query: 226 FVKSSLSAEGFDVVYDINGREAEEVEPIIEALPNLEQFIYCSSAGVYLKSDLLPHAEVDA 285
           FVKSSLSAEGFDVVYDINGREAEEVEPI+EALP LEQ+IYCSSAGVYLKSD+LPH E DA
Sbjct: 121 FVKSSLSAEGFDVVYDINGREAEEVEPILEALPKLEQYIYCSSAGVYLKSDILPHCEEDA 180

Query: 286 VDPKSRHKGKLETESLLQSKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPGS 345
           VDPKSRHKGKLETESLLQSK VNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIP+P S
Sbjct: 181 VDPKSRHKGKLETESLLQSKGVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPVPNS 240

Query: 346 GIQITQLGHVKDLATVFVQVLGNDKASKQVFNIAGDKYVTFDGLARACAKAGGFPEPEII 405
           GIQI+QLGHVKDLAT F+ VLGN+KAS+++FNI+G+KYVTFDGLA+ACAKAGGFPEPEI+
Sbjct: 241 GIQISQLGHVKDLATAFLNVLGNEKASREIFNISGEKYVTFDGLAKACAKAGGFPEPEIV 300

Query: 406 HYNXXXXXXXXXXXXXXXXQHFFASVDKAKSVLGWEPEFGLVEGLADSYNLDFGRGTFRK 465
           HYN                QHFFASV+KAK VLGW+PEF LVEGL DSYNLDFGRGTFRK
Sbjct: 301 HYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVEGLTDSYNLDFGRGTFRK 360

Query: 466 EADFSTDDIILGKSLV 481
           EADF+TDD+IL K LV
Sbjct: 361 EADFTTDDMILSKKLV 376


>AT3G63140.1 | Symbols: CSP41A | chloroplast stem-loop binding
           protein of  41 kDa | chr3:23327006-23328620 REVERSE
           LENGTH=406
          Length = 406

 Score =  181 bits (459), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 115/339 (33%), Positives = 169/339 (49%), Gaps = 17/339 (5%)

Query: 148 PKGFHVSASST---KKILIM----GGTRFIGVFLSRLLVKEGHQVTLFTRGKAPITQQLP 200
           P+ F V ASS    K +LI+    GG   IG + ++ L+  GH VT+ T G     +   
Sbjct: 66  PQKFTVKASSVGEKKNVLIVNTNSGGHAVIGFYFAKELLSAGHAVTILTVGDESSEKMKK 125

Query: 201 GEXXXXXXXXXXKIKHLKGDRKDYDFVKSSLSAEGFDVVYDINGREAEEVEPIIEALPN- 259
                         K + G+  +   V + +  E FDVV D NG++ + V P+++   + 
Sbjct: 126 PPFNRFSEIVSGGGKTVWGNPAN---VANVVGGETFDVVLDNNGKDLDTVRPVVDWAKSS 182

Query: 260 -LEQFIYCSSAGVYLKSDLLPHAEVDAVDPKSRHKGKLETESLLQSKDVNWTSIRPVYIY 318
            ++QF++ SSAG+Y  ++  PH E DAV   + H   +  E  L     NW S RP Y+ 
Sbjct: 183 GVKQFLFISSAGIYKSTEQPPHVEGDAVKADAGH---VVVEKYLAETFGNWASFRPQYMI 239

Query: 319 GPLNYNPVEEWFFHRLKAGRPIPIPGSGIQITQLGHVKDLATVFVQVLGN-DKASKQVFN 377
           G  N    EEWFF R+   R +PIPGSG+Q+T + HV+DL+++    + N + AS  +FN
Sbjct: 240 GSGNNKDCEEWFFDRIVRDRAVPIPGSGLQLTNISHVRDLSSMLTSAVANPEAASGNIFN 299

Query: 378 IAGDKYVTFDGLARACAKAGGFPEPEIIHYNXXXXXXXXXXXXXXXXQHFFASVDKAKSV 437
              D+ VT DG+A+ CA A G    EI+HY+                 HF+A    AK +
Sbjct: 300 CVSDRAVTLDGMAKLCAAAAG-KTVEIVHYDPKAIGVDAKKAFLFRNMHFYAEPRAAKDL 358

Query: 438 LGWEPEFGLVEGLADSYNLDFGRGTFRKEADFSTDDIIL 476
           LGWE +  L E L + +      G  +KE  F  DD IL
Sbjct: 359 LGWESKTNLPEDLKERFEEYVKIGRDKKEIKFELDDKIL 397