Miyakogusa Predicted Gene

Lj1g3v4789600.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4789600.1 Non Chatacterized Hit- tr|D7UA24|D7UA24_VITVI
Putative uncharacterized protein OS=Vitis vinifera GN=,82.7,0,no
description,Peptide chain release factor; PEPTIDE CHAIN RELEASE FACTOR
2,Peptide chain release fa,CUFF.33250.1
         (474 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G56350.1 | Symbols:  | Peptide chain release factor 2 | chr1:...   645   0.0  
AT5G36170.1 | Symbols: HCF109, ATPRFB | high chlorophyll fluores...   236   2e-62
AT5G36170.2 | Symbols: HCF109, ATPRFB | high chlorophyll fluores...   236   2e-62
AT5G36170.3 | Symbols: HCF109, ATPRFB | high chlorophyll fluores...   165   5e-41
AT2G47020.1 | Symbols:  | Peptide chain release factor 1 | chr2:...   159   5e-39
AT2G47020.2 | Symbols:  | Peptide chain release factor 1 | chr2:...   140   1e-33
AT3G62910.1 | Symbols: APG3 | Peptide chain release factor 1 | c...   119   7e-27
AT3G57190.1 | Symbols:  | peptide chain release factor, putative...   110   3e-24
AT1G33330.1 | Symbols:  | Class I peptide chain release factor |...    65   1e-10

>AT1G56350.1 | Symbols:  | Peptide chain release factor 2 |
           chr1:21094840-21097826 FORWARD LENGTH=482
          Length = 482

 Score =  645 bits (1664), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 307/408 (75%), Positives = 347/408 (85%), Gaps = 2/408 (0%)

Query: 64  FPSLVRYWASQPATTEHYSTSDGLTVDGILSNNWTILDENDGDWRSHAAALAQSIHLIKR 123
           F S  R  +S+       +T DGLTV+ I++N W ILDEN+GDW+SHAAA+AQSI +IKR
Sbjct: 74  FASSTRSLSSEAVAVA--ATCDGLTVERIIANQWPILDENEGDWKSHAAAIAQSIQVIKR 131

Query: 124 RLQWTKLKVRLEMLSAQLNKPDLWDDPVHAGKISREHGSLLGKMKEVNALERELLEHIEM 183
           RLQW KL VRL++LSA+LNK DLWDDP HAGKISREHGSL GKMK V   ERELLEHI+M
Sbjct: 132 RLQWKKLLVRLKVLSAELNKSDLWDDPTHAGKISREHGSLTGKMKGVMTFERELLEHIDM 191

Query: 184 IKLARDENDXXXXXXXXXXXXDMRRNXXXXXXXXXXXGEHDSCSCYIEVQGGAGGTESMD 243
           +KLA++END            DMRR             ++D CSCYIEVQ GAGGTES D
Sbjct: 192 LKLAKEENDSELESETLKALIDMRRVSKEKELEALLSADNDPCSCYIEVQAGAGGTESND 251

Query: 244 WAAMVMQMYKSWAQRRGYKVTVVDEMPGEIAGIKRATIKVDGEFAFGYAKAEVGVHRLVR 303
           WAAMVM+MYK+WAQRR + VTVVDE PGEIAGIKRATIKV+GE+A+GYAKAEVGVHRLVR
Sbjct: 252 WAAMVMEMYKTWAQRRKFSVTVVDEAPGEIAGIKRATIKVNGEYAYGYAKAEVGVHRLVR 311

Query: 304 ISPFDSAKRRHTSFAAVAVIPILGDGSTRVQINESDLRVERFRAGGAGGQHVNTTESAVR 363
           ISPFDS KRRHTSFAAVAVIPILGDGSTRV+IN+SDLR+ERFR+GGAGGQH NTT+SAVR
Sbjct: 312 ISPFDSGKRRHTSFAAVAVIPILGDGSTRVEINDSDLRIERFRSGGAGGQHANTTDSAVR 371

Query: 364 IVHIPTGVTATCQNERSQHQNKASAMAVLQSRLDQLEMARQTQMNAQHTQSLTDITWGSQ 423
           IVHIPTG+TATCQNERSQH NKASAMAVLQSRLDQLEMARQT MNAQHTQSLT+I+WG+Q
Sbjct: 372 IVHIPTGITATCQNERSQHSNKASAMAVLQSRLDQLEMARQTAMNAQHTQSLTEISWGNQ 431

Query: 424 IRSYVLHPYQMVKDLRTNYEVSDPDSVLEGDLDGFILSYLSASLDKNE 471
           IR+YVLHPY+MVKDLRTNYEVSDPDSVLEGDLDGFILS+LS+SLDK++
Sbjct: 432 IRTYVLHPYRMVKDLRTNYEVSDPDSVLEGDLDGFILSFLSSSLDKDD 479


>AT5G36170.1 | Symbols: HCF109, ATPRFB | high chlorophyll
           fluorescent 109 | chr5:14236083-14237974 REVERSE
           LENGTH=456
          Length = 456

 Score =  236 bits (603), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 125/338 (36%), Positives = 191/338 (56%), Gaps = 4/338 (1%)

Query: 129 KLKVRLEMLSAQLNKPDLWDDPVHAGKISREHGSLLGKMKEVNALERELLEHIEMIKLAR 188
           +L+  +  L ++      WDD   A +       L  +M+ ++  +  + +   ++KL  
Sbjct: 106 QLEQEITNLESKATDTSFWDDRTKAQETLSSLNDLKDRMRLLSEFKTMVEDAETIVKLTE 165

Query: 189 --DENDXXXXXXXXXXXXDMRRNXXXXXXXXXXXGEHDSCSCYIEVQGGAGGTESMDWAA 246
             D  D            ++ ++           G +D     + +  GAGGT++ DWA 
Sbjct: 166 EMDSTDVSLLEEAMGIIKELNKSLDKFELTQLLSGPYDKEGAVVYITAGAGGTDAQDWAD 225

Query: 247 MVMQMYKSWAQRRGYKVTVVDEMPGEIAGIKRATIKVDGEFAFGYAKAEVGVHRLVRISP 306
           M+++MY  W +++ YK  VV+   GE AGIK AT++++G +A+GY   E G HR+VR SP
Sbjct: 226 MLLRMYMRWGEKQRYKTKVVEMSNGEEAGIKSATLEIEGRYAYGYISGEKGTHRIVRQSP 285

Query: 307 FDSAKRRHTSFAAVAVIPILGDGSTRVQINESDLRVERFRAGGAGGQHVNTTESAVRIVH 366
           F+S   R TSF+ V V+P+L + +  ++I E DL +   RAGG GGQ+VN  E+AVRI H
Sbjct: 286 FNSKGLRQTSFSGVEVMPLLPEEAVGIEIPEEDLDISFTRAGGKGGQNVNKVETAVRITH 345

Query: 367 IPTGVTATCQNERSQHQNKASAMAVLQSRLDQL-EMARQTQMNAQHTQSLTDITWGSQIR 425
           IPTGV   C  ERSQ  NK  A+  L+++L  + E  R T++      ++    WG QIR
Sbjct: 346 IPTGVAVRCTEERSQLANKTRALIRLKAKLMVIAEEQRATEIKEIRGDAV-KAEWGQQIR 404

Query: 426 SYVLHPYQMVKDLRTNYEVSDPDSVLEGDLDGFILSYL 463
           +YV HPY++VKD+RT +E SD  SV++GDLD FI +YL
Sbjct: 405 NYVFHPYKLVKDVRTGHETSDITSVMDGDLDPFIKAYL 442


>AT5G36170.2 | Symbols: HCF109, ATPRFB | high chlorophyll
           fluorescent 109 | chr5:14236083-14237974 REVERSE
           LENGTH=455
          Length = 455

 Score =  236 bits (603), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 125/338 (36%), Positives = 191/338 (56%), Gaps = 4/338 (1%)

Query: 129 KLKVRLEMLSAQLNKPDLWDDPVHAGKISREHGSLLGKMKEVNALERELLEHIEMIKLAR 188
           +L+  +  L ++      WDD   A +       L  +M+ ++  +  + +   ++KL  
Sbjct: 105 QLEQEITNLESKATDTSFWDDRTKAQETLSSLNDLKDRMRLLSEFKTMVEDAETIVKLTE 164

Query: 189 --DENDXXXXXXXXXXXXDMRRNXXXXXXXXXXXGEHDSCSCYIEVQGGAGGTESMDWAA 246
             D  D            ++ ++           G +D     + +  GAGGT++ DWA 
Sbjct: 165 EMDSTDVSLLEEAMGIIKELNKSLDKFELTQLLSGPYDKEGAVVYITAGAGGTDAQDWAD 224

Query: 247 MVMQMYKSWAQRRGYKVTVVDEMPGEIAGIKRATIKVDGEFAFGYAKAEVGVHRLVRISP 306
           M+++MY  W +++ YK  VV+   GE AGIK AT++++G +A+GY   E G HR+VR SP
Sbjct: 225 MLLRMYMRWGEKQRYKTKVVEMSNGEEAGIKSATLEIEGRYAYGYISGEKGTHRIVRQSP 284

Query: 307 FDSAKRRHTSFAAVAVIPILGDGSTRVQINESDLRVERFRAGGAGGQHVNTTESAVRIVH 366
           F+S   R TSF+ V V+P+L + +  ++I E DL +   RAGG GGQ+VN  E+AVRI H
Sbjct: 285 FNSKGLRQTSFSGVEVMPLLPEEAVGIEIPEEDLDISFTRAGGKGGQNVNKVETAVRITH 344

Query: 367 IPTGVTATCQNERSQHQNKASAMAVLQSRLDQL-EMARQTQMNAQHTQSLTDITWGSQIR 425
           IPTGV   C  ERSQ  NK  A+  L+++L  + E  R T++      ++    WG QIR
Sbjct: 345 IPTGVAVRCTEERSQLANKTRALIRLKAKLMVIAEEQRATEIKEIRGDAV-KAEWGQQIR 403

Query: 426 SYVLHPYQMVKDLRTNYEVSDPDSVLEGDLDGFILSYL 463
           +YV HPY++VKD+RT +E SD  SV++GDLD FI +YL
Sbjct: 404 NYVFHPYKLVKDVRTGHETSDITSVMDGDLDPFIKAYL 441


>AT5G36170.3 | Symbols: HCF109, ATPRFB | high chlorophyll
           fluorescent 109 | chr5:14236297-14237974 REVERSE
           LENGTH=391
          Length = 391

 Score =  165 bits (418), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 91/294 (30%), Positives = 150/294 (51%), Gaps = 11/294 (3%)

Query: 95  NNWTILDEND-GDW--------RSHAAALAQSIHLIKRRLQWTKLKVRLEMLSAQLNKPD 145
           +N ++ +EN+  +W        R      +  +  I+      +L+  +  L ++     
Sbjct: 63  SNLSVSNENETSEWLMQDFYTLRKDVEIASARVEEIRASANLQQLEQEITNLESKATDTS 122

Query: 146 LWDDPVHAGKISREHGSLLGKMKEVNALERELLEHIEMIKLAR--DENDXXXXXXXXXXX 203
            WDD   A +       L  +M+ ++  +  + +   ++KL    D  D           
Sbjct: 123 FWDDRTKAQETLSSLNDLKDRMRLLSEFKTMVEDAETIVKLTEEMDSTDVSLLEEAMGII 182

Query: 204 XDMRRNXXXXXXXXXXXGEHDSCSCYIEVQGGAGGTESMDWAAMVMQMYKSWAQRRGYKV 263
            ++ ++           G +D     + +  GAGGT++ DWA M+++MY  W +++ YK 
Sbjct: 183 KELNKSLDKFELTQLLSGPYDKEGAVVYITAGAGGTDAQDWADMLLRMYMRWGEKQRYKT 242

Query: 264 TVVDEMPGEIAGIKRATIKVDGEFAFGYAKAEVGVHRLVRISPFDSAKRRHTSFAAVAVI 323
            VV+   GE AGIK AT++++G +A+GY   E G HR+VR SPF+S   R TSF+ V V+
Sbjct: 243 KVVEMSNGEEAGIKSATLEIEGRYAYGYISGEKGTHRIVRQSPFNSKGLRQTSFSGVEVM 302

Query: 324 PILGDGSTRVQINESDLRVERFRAGGAGGQHVNTTESAVRIVHIPTGVTATCQN 377
           P+L + +  ++I E DL +   RAGG GGQ+VN  E+AVRI HIPTGV   C +
Sbjct: 303 PLLPEEAVGIEIPEEDLDISFTRAGGKGGQNVNKVETAVRITHIPTGVAVRCTD 356


>AT2G47020.1 | Symbols:  | Peptide chain release factor 1 |
           chr2:19320090-19322279 REVERSE LENGTH=413
          Length = 413

 Score =  159 bits (401), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 89/244 (36%), Positives = 143/244 (58%), Gaps = 5/244 (2%)

Query: 222 EHDSCSCYIEVQGGAGGTESMDWAAMVMQMYKSWAQRRGYKVTVVDEMPGEIAGIKRATI 281
           E D   C +EV+ G GG E+  +A  + +MY+ ++Q++G+K  +VD    ++ G K A+ 
Sbjct: 158 EADERDCILEVRAGTGGEEASLFAMDIFRMYERYSQKKGWKFDIVDITESDMKGYKEASA 217

Query: 282 KVDGEFAFGYAKAEVGVHRLVRISPFDSAKRRHTSFAAVAVIPILGDGSTRVQINESDLR 341
            + G   +G  K E G+HR+ RI   + + R HTS  +VA++P   +    VQ+   DLR
Sbjct: 218 AICGASVYGKLKFESGIHRVQRIPITEKSGRIHTSAISVAILPQADE--VDVQLRNEDLR 275

Query: 342 VERFRAGGAGGQHVNTTESAVRIVHIPTGVTATCQNERSQHQNKASAMAVLQSRLDQLEM 401
           ++ +R+GG+GGQH NTT SAVRI+H+PTG+  + Q+ERSQH N+A A+ VL +RL ++E 
Sbjct: 276 IDTYRSGGSGGQHANTTNSAVRIIHLPTGMMVSIQDERSQHMNRAKALKVLCARLYEIER 335

Query: 402 AR-QTQMNAQHTQSLTDITWGSQIRSYVLHPYQMVKDLRTNYEVSDPDSVLEGD-LDGFI 459
            R Q+  +   +  +       +IR+Y   P   V D R        + +++G+ LD FI
Sbjct: 336 LRIQSSRSKLRSDQIGSGDRSGRIRTYNF-PQGRVTDHRVGITHHAIEDMMQGENLDMFI 394

Query: 460 LSYL 463
            + L
Sbjct: 395 DALL 398


>AT2G47020.2 | Symbols:  | Peptide chain release factor 1 |
           chr2:19320439-19322002 REVERSE LENGTH=256
          Length = 256

 Score =  140 bits (354), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 66/166 (39%), Positives = 107/166 (64%), Gaps = 2/166 (1%)

Query: 222 EHDSCSCYIEVQGGAGGTESMDWAAMVMQMYKSWAQRRGYKVTVVDEMPGEIAGIKRATI 281
           E D   C +EV+ G GG E+  +A  + +MY+ ++Q++G+K  +VD    ++ G K A+ 
Sbjct: 93  EADERDCILEVRAGTGGEEASLFAMDIFRMYERYSQKKGWKFDIVDITESDMKGYKEASA 152

Query: 282 KVDGEFAFGYAKAEVGVHRLVRISPFDSAKRRHTSFAAVAVIPILGDGSTRVQINESDLR 341
            + G   +G  K E G+HR+ RI   + + R HTS  +VA++P   +    VQ+   DLR
Sbjct: 153 AICGASVYGKLKFESGIHRVQRIPITEKSGRIHTSAISVAILPQADE--VDVQLRNEDLR 210

Query: 342 VERFRAGGAGGQHVNTTESAVRIVHIPTGVTATCQNERSQHQNKAS 387
           ++ +R+GG+GGQH NTT SAVRI+H+PTG+  + Q+ERSQH ++++
Sbjct: 211 IDTYRSGGSGGQHANTTNSAVRIIHLPTGMMVSIQDERSQHMSQST 256


>AT3G62910.1 | Symbols: APG3 | Peptide chain release factor 1 |
           chr3:23257661-23260386 REVERSE LENGTH=422
          Length = 422

 Score =  119 bits (297), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 75/275 (27%), Positives = 137/275 (49%), Gaps = 7/275 (2%)

Query: 137 LSAQLNKPDLWDDPVHAGKISR---EHGSLLGKMKEVNALERELLEHIEMIKLARDENDX 193
           LS +L  PD+  +     K+++   E   ++   +     E++LLE   + K A D+ D 
Sbjct: 71  LSVKLADPDVVSNQSEYQKLAQSMSELDEVVTVFRRFKDCEKQLLESKVLAKEAGDDEDM 130

Query: 194 XXX--XXXXXXXXDMRRNXXXXXXXXXXXGEHDSCSCYIEVQGGAGGTESMDWAAMVMQM 251
                        ++                 D+ +  +EV+ G GG E+  W   +++M
Sbjct: 131 AEMIGSEINSLTKEIEELEKQLKVLLLPSDPLDARNILLEVRAGTGGDEAAIWTGDLVRM 190

Query: 252 YKSWAQRRGYKVTVVDEMPGEIAGIKRATIKVDGEFAFGYAKAEVGVHRLVRISPFDSAK 311
           Y+ +++R  +K ++V     E  G K   +++ G   +   K E GVHR+ R+   ++  
Sbjct: 191 YQRYSERSSWKFSMVSCSEAEHGGYKTCVMEIKGNRVYSKLKYESGVHRVQRVPQTETQG 250

Query: 312 RRHTSFAAVAVIPILGDGSTRVQINESDLRVERFRAGGAGGQHVNTTESAVRIVHIPTGV 371
           R HTS A VA++P   +    V I+  D+ +   R+GGAGGQ+VN  E+A+ + H P+G+
Sbjct: 251 RVHTSTATVAIMPEADE--VEVVIDPKDIELTSARSGGAGGQNVNKVETAIDLFHKPSGI 308

Query: 372 TATCQNERSQHQNKASAMAVLQSRLDQLEMARQTQ 406
              C  ER+Q +NKA A  +L+++L ++++  Q +
Sbjct: 309 RIFCTEERTQIRNKARAFQLLRAKLYEIKVREQQE 343


>AT3G57190.1 | Symbols:  | peptide chain release factor, putative |
           chr3:21166468-21168198 FORWARD LENGTH=406
          Length = 406

 Score =  110 bits (274), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 88/324 (27%), Positives = 152/324 (46%), Gaps = 16/324 (4%)

Query: 145 DLWDDPVHAGKISREHGSLLGKMKEVNALERELLEHIEMIKLAR-DENDXXXXXXXXXXX 203
           DLWDDP  + +I  +       +  +  L+ +  E   +I+L   D  D           
Sbjct: 87  DLWDDPAKSDEILLKLADRAKAVDSLKDLKYKAEEAKLIIQLGEMDAIDYSLFEQAYDSS 146

Query: 204 XDMRRNXXXXXXXXXXXGEHDSCSCYIEVQGGAGGTESMDWAAMVMQMYKSWAQRRGYKV 263
            D+ R+            ++D+    + ++ G+ G +S  W   V+ MY  WA+R G   
Sbjct: 147 LDVSRSLHHYEMSKLLRDQYDAEGACMIIKSGSPGAKSQIWTEQVVSMYIKWAERLGQNA 206

Query: 264 TVVDE--MPGEIAGIKRATIKVDGEFAFGYAKAEVGVHRLVRISPFDSAKRRHTSFAAVA 321
            V ++  +    +G+  ATI+ + EFA+GY   E GVHRL+      S+       A V 
Sbjct: 207 RVAEKCSLLSNKSGVSSATIEFEFEFAYGYLLGERGVHRLII-----SSTSNEECSATVD 261

Query: 322 VIPILGDGSTRVQINESDLRVERFRAGGAGGQHVNTTESAVRIVHIPTGVTATCQNERSQ 381
           +IP+    S   ++ E DL V    +  A   H    E+ V I HIP+GVT     ER++
Sbjct: 262 IIPLFLRASPDFEVKEGDLIV----SYPAKEDH-KIAENMVCIHHIPSGVTLQSSGERNR 316

Query: 382 HQNKASAMAVLQSRLDQLEMARQTQM-NAQHTQSLTDITWGSQIRSYVLHPYQMVKDLRT 440
             N+  A+  L+++L  L +A++ ++ +     S   +    + RSYV   ++MV D +T
Sbjct: 317 FANRIKALNRLKAKL--LVIAKEQKVSDVNKIDSKNILEPREETRSYVSKGHKMVVDRKT 374

Query: 441 NYEVSDPDSVLEGDLDGFILSYLS 464
             E+ D  SVL+G++   + +++S
Sbjct: 375 GLEILDLKSVLDGNIGPLLGAHIS 398


>AT1G33330.1 | Symbols:  | Class I peptide chain release factor |
           chr1:12084968-12086238 FORWARD LENGTH=257
          Length = 257

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/56 (51%), Positives = 40/56 (71%)

Query: 341 RVERFRAGGAGGQHVNTTESAVRIVHIPTGVTATCQNERSQHQNKASAMAVLQSRL 396
           R+E FR  G GGQH N  +SAVR+ H+PTG+ A    +RSQH+N+ASA+  L++ L
Sbjct: 99  RLETFRVSGPGGQHRNKRDSAVRLKHLPTGIVAQAVEDRSQHKNRASALNRLRTLL 154