Miyakogusa Predicted Gene

Lj1g3v4766290.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4766290.1 Non Chatacterized Hit- tr|F6H6U2|F6H6U2_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,37.75,0.000000000000007,Ribonuclease H-like,Ribonuclease H-like
domain; no description,NULL; no description,Exonuclease;
seg,CUFF.33219.1
         (332 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G26940.4 | Symbols:  | Polynucleotidyl transferase, ribonucle...   236   1e-62
AT5G26940.3 | Symbols:  | Polynucleotidyl transferase, ribonucle...   236   1e-62
AT5G26940.2 | Symbols:  | Polynucleotidyl transferase, ribonucle...   236   1e-62
AT5G26940.1 | Symbols:  | Polynucleotidyl transferase, ribonucle...   236   1e-62

>AT5G26940.4 | Symbols:  | Polynucleotidyl transferase, ribonuclease
           H-like superfamily protein | chr5:9481429-9482647
           FORWARD LENGTH=316
          Length = 316

 Score =  236 bits (602), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 138/321 (42%), Positives = 189/321 (58%), Gaps = 15/321 (4%)

Query: 6   MIFSLLQLPRCRIHSLANYWGETXXXXXXXXXXXXIRLLSSRINGLQEGHRKKWTRRPIT 65
           M  S+ Q+ R RIHS  +   E             ++LL  R + +    + +W RR ++
Sbjct: 1   MCISISQVSRLRIHSFGSSCCE--RVHGWIKNSSSLKLLDVRASSVD--GKARWIRRNVS 56

Query: 66  TNTEGKGGTKSRSTKHEIXXXXXXXXXXXXXNKTQLGEFQDIQYCDVKEIAQKKNLSSLV 125
           T T+G   ++S +    +             ++T++  F ++Q    + +AQ K+LS L+
Sbjct: 57  TTTQG---SRSNTKSSVLGGTVPVTRIIDEESRTKVQPFGNLQ----QRLAQDKDLSKLL 109

Query: 126 TVIAFDIETTGCGAKKHRSIEIALRDRQGGENSTFQTLVNPQRY-VPNSDVHGITNQMVN 184
           TVI  D+ETTG   K  R IEIA +D  GG  STFQTLVNP    + N+ +HGI N MV 
Sbjct: 110 TVIVSDLETTGLHRKNERIIEIAAQDIAGGGYSTFQTLVNPGVVPITNAHIHGIRNDMVC 169

Query: 185 SPDVPRMEDLIPILLHYVRSREKPGGYVLWVAHNARSFDVPFFINELGRSSVKIPSNWLF 244
            P+VPRME+LIPI L YV SR+KPGGYV+ VAHN +SFD  F INE  R S +IP NWL 
Sbjct: 170 RPEVPRMEELIPIFLRYVESRQKPGGYVMLVAHNGKSFDFQFLINEFNRCSYEIPHNWLL 229

Query: 245 LDTLPLGRELMMKLKAESEEKKPPANLAALCEHYNVKLNGAAHRAMVDVDALSVIFSRLT 304
           LD+LPL RE M   K+     K  ++L AL ++Y++   G AHRA+ DV  LS +F +LT
Sbjct: 230 LDSLPLARENM---KSVEPTVKLSSSLEALADYYSLTREGDAHRALSDVLLLSKVFQKLT 286

Query: 305 FDLKLTLSDLVEKSFQESDIT 325
            DLKL+LSDLV +    SDI+
Sbjct: 287 IDLKLSLSDLVLRCHTASDIS 307


>AT5G26940.3 | Symbols:  | Polynucleotidyl transferase, ribonuclease
           H-like superfamily protein | chr5:9481429-9482647
           FORWARD LENGTH=316
          Length = 316

 Score =  236 bits (602), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 138/321 (42%), Positives = 189/321 (58%), Gaps = 15/321 (4%)

Query: 6   MIFSLLQLPRCRIHSLANYWGETXXXXXXXXXXXXIRLLSSRINGLQEGHRKKWTRRPIT 65
           M  S+ Q+ R RIHS  +   E             ++LL  R + +    + +W RR ++
Sbjct: 1   MCISISQVSRLRIHSFGSSCCE--RVHGWIKNSSSLKLLDVRASSVD--GKARWIRRNVS 56

Query: 66  TNTEGKGGTKSRSTKHEIXXXXXXXXXXXXXNKTQLGEFQDIQYCDVKEIAQKKNLSSLV 125
           T T+G   ++S +    +             ++T++  F ++Q    + +AQ K+LS L+
Sbjct: 57  TTTQG---SRSNTKSSVLGGTVPVTRIIDEESRTKVQPFGNLQ----QRLAQDKDLSKLL 109

Query: 126 TVIAFDIETTGCGAKKHRSIEIALRDRQGGENSTFQTLVNPQRY-VPNSDVHGITNQMVN 184
           TVI  D+ETTG   K  R IEIA +D  GG  STFQTLVNP    + N+ +HGI N MV 
Sbjct: 110 TVIVSDLETTGLHRKNERIIEIAAQDIAGGGYSTFQTLVNPGVVPITNAHIHGIRNDMVC 169

Query: 185 SPDVPRMEDLIPILLHYVRSREKPGGYVLWVAHNARSFDVPFFINELGRSSVKIPSNWLF 244
            P+VPRME+LIPI L YV SR+KPGGYV+ VAHN +SFD  F INE  R S +IP NWL 
Sbjct: 170 RPEVPRMEELIPIFLRYVESRQKPGGYVMLVAHNGKSFDFQFLINEFNRCSYEIPHNWLL 229

Query: 245 LDTLPLGRELMMKLKAESEEKKPPANLAALCEHYNVKLNGAAHRAMVDVDALSVIFSRLT 304
           LD+LPL RE M   K+     K  ++L AL ++Y++   G AHRA+ DV  LS +F +LT
Sbjct: 230 LDSLPLARENM---KSVEPTVKLSSSLEALADYYSLTREGDAHRALSDVLLLSKVFQKLT 286

Query: 305 FDLKLTLSDLVEKSFQESDIT 325
            DLKL+LSDLV +    SDI+
Sbjct: 287 IDLKLSLSDLVLRCHTASDIS 307


>AT5G26940.2 | Symbols:  | Polynucleotidyl transferase, ribonuclease
           H-like superfamily protein | chr5:9481429-9482647
           FORWARD LENGTH=316
          Length = 316

 Score =  236 bits (602), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 138/321 (42%), Positives = 189/321 (58%), Gaps = 15/321 (4%)

Query: 6   MIFSLLQLPRCRIHSLANYWGETXXXXXXXXXXXXIRLLSSRINGLQEGHRKKWTRRPIT 65
           M  S+ Q+ R RIHS  +   E             ++LL  R + +    + +W RR ++
Sbjct: 1   MCISISQVSRLRIHSFGSSCCE--RVHGWIKNSSSLKLLDVRASSVD--GKARWIRRNVS 56

Query: 66  TNTEGKGGTKSRSTKHEIXXXXXXXXXXXXXNKTQLGEFQDIQYCDVKEIAQKKNLSSLV 125
           T T+G   ++S +    +             ++T++  F ++Q    + +AQ K+LS L+
Sbjct: 57  TTTQG---SRSNTKSSVLGGTVPVTRIIDEESRTKVQPFGNLQ----QRLAQDKDLSKLL 109

Query: 126 TVIAFDIETTGCGAKKHRSIEIALRDRQGGENSTFQTLVNPQRY-VPNSDVHGITNQMVN 184
           TVI  D+ETTG   K  R IEIA +D  GG  STFQTLVNP    + N+ +HGI N MV 
Sbjct: 110 TVIVSDLETTGLHRKNERIIEIAAQDIAGGGYSTFQTLVNPGVVPITNAHIHGIRNDMVC 169

Query: 185 SPDVPRMEDLIPILLHYVRSREKPGGYVLWVAHNARSFDVPFFINELGRSSVKIPSNWLF 244
            P+VPRME+LIPI L YV SR+KPGGYV+ VAHN +SFD  F INE  R S +IP NWL 
Sbjct: 170 RPEVPRMEELIPIFLRYVESRQKPGGYVMLVAHNGKSFDFQFLINEFNRCSYEIPHNWLL 229

Query: 245 LDTLPLGRELMMKLKAESEEKKPPANLAALCEHYNVKLNGAAHRAMVDVDALSVIFSRLT 304
           LD+LPL RE M   K+     K  ++L AL ++Y++   G AHRA+ DV  LS +F +LT
Sbjct: 230 LDSLPLARENM---KSVEPTVKLSSSLEALADYYSLTREGDAHRALSDVLLLSKVFQKLT 286

Query: 305 FDLKLTLSDLVEKSFQESDIT 325
            DLKL+LSDLV +    SDI+
Sbjct: 287 IDLKLSLSDLVLRCHTASDIS 307


>AT5G26940.1 | Symbols:  | Polynucleotidyl transferase, ribonuclease
           H-like superfamily protein | chr5:9481429-9482647
           FORWARD LENGTH=316
          Length = 316

 Score =  236 bits (602), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 138/321 (42%), Positives = 189/321 (58%), Gaps = 15/321 (4%)

Query: 6   MIFSLLQLPRCRIHSLANYWGETXXXXXXXXXXXXIRLLSSRINGLQEGHRKKWTRRPIT 65
           M  S+ Q+ R RIHS  +   E             ++LL  R + +    + +W RR ++
Sbjct: 1   MCISISQVSRLRIHSFGSSCCE--RVHGWIKNSSSLKLLDVRASSVD--GKARWIRRNVS 56

Query: 66  TNTEGKGGTKSRSTKHEIXXXXXXXXXXXXXNKTQLGEFQDIQYCDVKEIAQKKNLSSLV 125
           T T+G   ++S +    +             ++T++  F ++Q    + +AQ K+LS L+
Sbjct: 57  TTTQG---SRSNTKSSVLGGTVPVTRIIDEESRTKVQPFGNLQ----QRLAQDKDLSKLL 109

Query: 126 TVIAFDIETTGCGAKKHRSIEIALRDRQGGENSTFQTLVNPQRY-VPNSDVHGITNQMVN 184
           TVI  D+ETTG   K  R IEIA +D  GG  STFQTLVNP    + N+ +HGI N MV 
Sbjct: 110 TVIVSDLETTGLHRKNERIIEIAAQDIAGGGYSTFQTLVNPGVVPITNAHIHGIRNDMVC 169

Query: 185 SPDVPRMEDLIPILLHYVRSREKPGGYVLWVAHNARSFDVPFFINELGRSSVKIPSNWLF 244
            P+VPRME+LIPI L YV SR+KPGGYV+ VAHN +SFD  F INE  R S +IP NWL 
Sbjct: 170 RPEVPRMEELIPIFLRYVESRQKPGGYVMLVAHNGKSFDFQFLINEFNRCSYEIPHNWLL 229

Query: 245 LDTLPLGRELMMKLKAESEEKKPPANLAALCEHYNVKLNGAAHRAMVDVDALSVIFSRLT 304
           LD+LPL RE M   K+     K  ++L AL ++Y++   G AHRA+ DV  LS +F +LT
Sbjct: 230 LDSLPLARENM---KSVEPTVKLSSSLEALADYYSLTREGDAHRALSDVLLLSKVFQKLT 286

Query: 305 FDLKLTLSDLVEKSFQESDIT 325
            DLKL+LSDLV +    SDI+
Sbjct: 287 IDLKLSLSDLVLRCHTASDIS 307