Miyakogusa Predicted Gene

Lj1g3v4766270.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4766270.1 tr|J9J073|J9J073_9SPIT RING/U-box protein
OS=Oxytricha trifallax PE=4 SV=1,34.55,1e-17,SUBFAMILY NOT NAMED,NULL;
SPLICING FACTOR, ARGININE/SERINE-RICH 2,RNAP C-TERM INTERACTING
PROTEIN,NU,CUFF.33218.1
         (857 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G05670.1 | Symbols:  | RING/U-box protein | chr3:1653888-1657...   444   e-124
AT4G10940.1 | Symbols:  | RING/U-box protein | chr4:6708982-6710...    71   4e-12
AT1G67180.1 | Symbols:  | zinc finger (C3HC4-type RING finger) f...    61   4e-09
AT3G01460.1 | Symbols: MBD9, ATMBD9 | methyl-CPG-binding domain ...    56   1e-07
AT5G58610.1 | Symbols:  | PHD finger transcription factor, putat...    52   1e-06
AT2G39100.1 | Symbols:  | RING/U-box superfamily protein | chr2:...    52   2e-06

>AT3G05670.1 | Symbols:  | RING/U-box protein | chr3:1653888-1657022
           FORWARD LENGTH=883
          Length = 883

 Score =  444 bits (1143), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 264/578 (45%), Positives = 335/578 (57%), Gaps = 58/578 (10%)

Query: 295 YEFTISEEEREQVREAKKXXXXXXXXXXXXXXXMENEEVGVYEDLNQQPKPPGRKGKEKS 354
           YE+TISEEEREQ+REA                     +  V +DL Q  K P +KG++K 
Sbjct: 348 YEYTISEEEREQIREAGSLLKSSVNHASSI------RQTTVNKDLPQLRKSPVKKGEKKV 401

Query: 355 EEPQGRKGKEKVGNSKSEVGKQVCGICLSEENKRRVRGVLDCCTHYFCFTCIMEWSKVET 414
           E              K +V K VCGICLSEE+ RR++G LDCC+HYFCFTCIMEWSKVE+
Sbjct: 402 EL------------VKRDVIKNVCGICLSEEDMRRLKGTLDCCSHYFCFTCIMEWSKVES 449

Query: 415 RCPLCKQRFKTINKPTRSTAGLDLREVVIQVPERDQVYQPSEEELRSYIDPYETVLCSEC 474
           RCPLCKQRF+TI+KP RST G+DLREVVI VPERDQVYQP+EEELRSY+DPYE ++C+EC
Sbjct: 450 RCPLCKQRFRTISKPARSTPGVDLREVVIPVPERDQVYQPTEEELRSYLDPYENIICTEC 509

Query: 475 HQGGDDGLMLLCDICDSPAHTYCVGLGREVPEGNWYCDGCRPVALASLNSQIQERVADSR 534
           HQG DDGLMLLCD+CDS AHTYCVGLGREVPEGNWYC+GCRPVAL S +SQ    +   +
Sbjct: 510 HQGDDDGLMLLCDLCDSSAHTYCVGLGREVPEGNWYCEGCRPVALGSASSQTH--IISEQ 567

Query: 535 VSTQNPSVRSSPVLHSQESIDLNLTSSPGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXT 594
                   R SP++ S +  D++L  SP                               T
Sbjct: 568 QRGSGFYSRPSPLVVSGQYQDVSLIVSPRTPFFNGENLFSPRIPNGDAQGSSPSGLGATT 627

Query: 595 LSERRWIHRQIHQLLSTDRMTSTTGRTNSISALSSTSNLQNTQIDQSR--EPTTQHTRTQ 652
           LS RR +HR I  +++ DR+ +   RT      +S+     TQI   R  +P +Q   +Q
Sbjct: 628 LSRRRTLHRHIQNIINGDRLINMGARTGG----TSSDGFVTTQIGHGRTIDP-SQPVASQ 682

Query: 653 DVGTSYHTLVEERLRNDISPLMQNGDP------FSTIVSNSRRPIIEDSTMLSNRPVNGV 706
           + G S + + EERL N+ S L+   DP           S      + ++T L  RP++  
Sbjct: 683 ETGISLYAISEERLPNNNS-LISAHDPELLSPKLDEFGSEEAFRRLSNNTFLGERPIDLG 741

Query: 707 LWPGLL-GTPTLSDHQPIHQFSSRPNSAIESSLSPAIKEESNFHIVKEQVRAMVKSHLQS 765
              GL  G P +S+ Q +H  S  PN+   SS++             E+++  VK+HL++
Sbjct: 742 FHHGLAQGDPLVSNQQRLH--SHMPNTM--SSMA------------GERLQERVKAHLKN 785

Query: 766 LSRDIDLGHSTFKDIARSSTHTLLAACGLEHRKSEVCTVAPPPVC--HHM----EQIAGE 819
           LS   DLG +TF +I+  S HT+LAACGLEH  SEV  V PP  C  HHM       +  
Sbjct: 786 LSSQNDLGQTTFDEISTCSIHTILAACGLEHESSEVHLVPPPVTCTHHHMTPGSSSSSSS 845

Query: 820 QTSLIKDCCSSCFDRFVVDVVKKILDTTMSSQWLRLGL 857
            +SL+K CC SCFD FV DVVK ILDT     WL LGL
Sbjct: 846 GSSLMKGCCYSCFDSFVEDVVKMILDTRQ-PHWLSLGL 882


>AT4G10940.1 | Symbols:  | RING/U-box protein | chr4:6708982-6710923
           REVERSE LENGTH=192
          Length = 192

 Score = 70.9 bits (172), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 57/167 (34%), Positives = 74/167 (44%), Gaps = 27/167 (16%)

Query: 368 NSKSEVGKQVCGICLSEENKRRVRGVLDCCTHYFCFTCIMEWSKVETRCPLCKQRFKTI- 426
           N  +E+  + CGIC+   +    RGVLDCC H+FCF CI  WS +   CPLC++ F+ I 
Sbjct: 21  NGMTEIEGERCGICM---DIIIDRGVLDCCQHWFCFECIDNWSTIMNLCPLCQREFQLIT 77

Query: 427 -----NKPTRSTAGLDL----REVVIQVPERDQVYQPSEE-ELRSYIDPYETV-----LC 471
                +    S    DL     +  I+  E D V  PS   +   YID    V     LC
Sbjct: 78  CVPVFDSGESSKVDEDLVSGDEDCCIE-EETDVVSSPSHYIDDTHYIDENAVVCLDGDLC 136

Query: 472 ----SECHQGGDDGL--MLLCDICDSPAHTYCVGLGRE-VPEGNWYC 511
               +  +  GD  L   + CD CD   H  CVG   E   E  W C
Sbjct: 137 KIRNTFSYIEGDSNLDTSIACDSCDMWYHAICVGFDVENASEDTWVC 183


>AT1G67180.1 | Symbols:  | zinc finger (C3HC4-type RING finger)
           family protein / BRCT domain-containing protein |
           chr1:25130099-25132169 FORWARD LENGTH=453
          Length = 453

 Score = 60.8 bits (146), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 74/155 (47%), Gaps = 21/155 (13%)

Query: 378 CGICLSEENKRRVRGVLDCCTHYFCFTCIMEWS------KVETRCPLCKQRFKTINKPTR 431
           C IC +E +  R  G+L C  H FC++CI +W+      + +T CPLCK  F TI K   
Sbjct: 300 CIICWTEFSSSR--GILPC-GHRFCYSCIQKWADRLVSERKKTTCPLCKSNFITITKIED 356

Query: 432 STAGLDLREVVIQVPERDQ-----VYQPSEEELRSYIDPYETVL-CSECHQGGDDGLMLL 485
           + +  D +     VP+        V  P EEE R  ++P      CS C+    + L++ 
Sbjct: 357 ADSS-DQKIYSQTVPDLSSTNNILVVLPEEEEQRQTLNPLTRASGCSRCYLTEPEELLIR 415

Query: 486 CDICD-SPAHTYCVGLGREVPEGNWYCDGCRPVAL 519
           C +C+    H+YC+     +P   W C+ C  + +
Sbjct: 416 CHLCNFRRIHSYCLD-PYLLP---WTCNHCNDLQM 446


>AT3G01460.1 | Symbols: MBD9, ATMBD9 | methyl-CPG-binding domain 9 |
            chr3:173316-182038 FORWARD LENGTH=2176
          Length = 2176

 Score = 56.2 bits (134), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 62/143 (43%), Gaps = 17/143 (11%)

Query: 388  RRVRGVLDCCTHYFCFTCIMEWSKVETRC---PLCKQRFKTINKPTRSTAGLDLREVVIQ 444
            R   G  D  T  F    +  WS +       P C     T+++  +S    ++  +V +
Sbjct: 1193 RLAAGAYDGSTEAFLEDVLELWSSIRVMYADQPDCVDLVATLSEKFKSLYEAEVVPLVQK 1252

Query: 445  VPERDQVYQPSEEELRSYID-----------PYETVLCSECHQGGDDGLMLLCDICDSPA 493
            + +  ++   S E  +   D           P++  +C  C    DD  +LLCD CD+  
Sbjct: 1253 LKDYRKLECLSAEMKKEIKDIVVSVNKLPKAPWDEGVCKVCGVDKDDDSVLLCDTCDAEY 1312

Query: 494  HTYCVG--LGREVPEGNWYCDGC 514
            HTYC+   L R +P+GNWYC  C
Sbjct: 1313 HTYCLNPPLIR-IPDGNWYCPSC 1334


>AT5G58610.1 | Symbols:  | PHD finger transcription factor, putative
           | chr5:23686771-23691053 REVERSE LENGTH=1065
          Length = 1065

 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 4/46 (8%)

Query: 469 VLCSECHQGGDDGLMLLCDICDSPAHTYCVGLGREVPEGNWYCDGC 514
           V CS CH GG    ++LCD C S  H  C+GL  +VP+G+W+C  C
Sbjct: 695 VFCSVCHYGGK---LILCDGCPSAFHANCLGL-EDVPDGDWFCQSC 736


>AT2G39100.1 | Symbols:  | RING/U-box superfamily protein |
           chr2:16317462-16318869 FORWARD LENGTH=296
          Length = 296

 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 26/48 (54%)

Query: 378 CGICLSEENKRRVRGVLDCCTHYFCFTCIMEWSKVETRCPLCKQRFKT 425
           C ICL    +RR   V+  C H +C  CI +WS  +  CPLC  RF +
Sbjct: 39  CPICLENLTERRSAAVITVCKHGYCLACIRKWSSFKRNCPLCNTRFDS 86