Miyakogusa Predicted Gene

Lj1g3v4765230.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4765230.1 tr|B9MZM0|B9MZM0_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_595514 PE=4
SV=1,35.79,1e-17,seg,NULL; ZF_C3H1,Zinc finger, CCCH-type; no
description,NULL; Frigida,Frigida-like; zf-CCCH,Zinc fi,CUFF.33215.1
         (347 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G63260.1 | Symbols:  | Zinc finger C-x8-C-x5-C-x3-H type fami...    50   3e-06
AT5G63260.2 | Symbols:  | Zinc finger C-x8-C-x5-C-x3-H type fami...    49   4e-06

>AT5G63260.1 | Symbols:  | Zinc finger C-x8-C-x5-C-x3-H type family
           protein | chr5:25361900-25364453 FORWARD LENGTH=435
          Length = 435

 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 13/58 (22%)

Query: 295 GADEGESSEGC-------------AEDCMMYLKTGSCRFGSSCMFNHSIRSRIVYVRQ 339
           G+D+ E  EG              +EDC  Y++TGSC++GSSC FNH +R ++   R+
Sbjct: 80  GSDQKEEEEGSEKRMMMVYPVRPDSEDCSFYMRTGSCKYGSSCKFNHPVRRKLQIGRE 137


>AT5G63260.2 | Symbols:  | Zinc finger C-x8-C-x5-C-x3-H type family
           protein | chr5:25361900-25364453 FORWARD LENGTH=451
          Length = 451

 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 13/53 (24%)

Query: 295 GADEGESSEGC-------------AEDCMMYLKTGSCRFGSSCMFNHSIRSRI 334
           G+D+ E  EG              +EDC  Y++TGSC++GSSC FNH +R ++
Sbjct: 80  GSDQKEEEEGSEKRMMMVYPVRPDSEDCSFYMRTGSCKYGSSCKFNHPVRRKL 132