Miyakogusa Predicted Gene
- Lj1g3v4765050.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v4765050.1 Non Chatacterized Hit- tr|I1NB13|I1NB13_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,90.39,0,GRR1-RELATED,
ARATH,NULL; F-BOX/LEUCINE RICH REPEAT PROTEIN,NULL; RNI-like,NULL; no
description,NULL,CUFF.33316.1
(396 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G62980.1 | Symbols: TIR1 | F-box/RNI-like superfamily protein... 639 0.0
AT4G03190.1 | Symbols: GRH1, ATGRH1, AFB1 | GRR1-like protein 1 ... 514 e-146
AT1G12820.1 | Symbols: AFB3 | auxin signaling F-box 3 | chr1:436... 479 e-135
AT3G26810.1 | Symbols: AFB2 | auxin signaling F-box 2 | chr3:986... 475 e-134
AT5G49980.1 | Symbols: AFB5 | auxin F-box protein 5 | chr5:20334... 362 e-100
AT4G24390.1 | Symbols: | RNI-like superfamily protein | chr4:12... 362 e-100
AT4G24390.2 | Symbols: | RNI-like superfamily protein | chr4:12... 362 e-100
AT2G39940.1 | Symbols: COI1 | RNI-like superfamily protein | chr... 215 5e-56
AT1G47056.1 | Symbols: VFB1 | VIER F-box proteine 1 | chr1:17276... 69 6e-12
AT4G15475.1 | Symbols: | F-box/RNI-like superfamily protein | c... 67 2e-11
AT5G67250.1 | Symbols: SKIP2, VFB4 | SKP1/ASK1-interacting prote... 65 1e-10
AT2G36370.1 | Symbols: | ubiquitin-protein ligases | chr2:15247... 59 9e-09
AT5G23340.1 | Symbols: | RNI-like superfamily protein | chr5:78... 56 5e-08
AT1G77000.2 | Symbols: SKP2B | RNI-like superfamily protein | ch... 49 5e-06
AT1G77000.1 | Symbols: ATSKP2;2, SKP2B | RNI-like superfamily pr... 49 5e-06
>AT3G62980.1 | Symbols: TIR1 | F-box/RNI-like superfamily protein |
chr3:23273479-23276181 REVERSE LENGTH=594
Length = 594
Score = 639 bits (1648), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 303/395 (76%), Positives = 353/395 (89%), Gaps = 2/395 (0%)
Query: 2 KRMVCSFPEEVLEHVFSFIQVDTDRNAISLVCKSWYEIERWCRRKVFVGNCYAVSPMIVI 61
KR+ SFPEEVLEHVFSFIQ+D DRN++SLVCKSWYEIERWCRRKVF+GNCYAVSP VI
Sbjct: 3 KRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVI 62
Query: 62 KRFPEVRSIALKGKPHFADFNLVPEGWGGYVCTWIAAMSRAFPWLEEIRLKRMVISDESL 121
+RFP+VRS+ LKGKPHFADFNLVP+GWGGYV WI AMS ++ WLEEIRLKRMV++D+ L
Sbjct: 63 RRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCL 122
Query: 122 ELIAKSFKNFKVLVLTSCEGFTTDGLAAIAANCRNLRELDLQESEVEDLSGHWLSHFPDS 181
ELIAKSFKNFKVLVL+SCEGF+TDGLAAIAA CRNL+ELDL+ES+V+D+SGHWLSHFPD+
Sbjct: 123 ELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182
Query: 182 YTSLVSLNISCLSNEVSLSALERLLGRCPNMKTLRLNRAVPLDRLPNLLRQCPQLVELGT 241
YTSLVSLNISCL++EVS SALERL+ RCPN+K+L+LNRAVPL++L LL++ PQL ELGT
Sbjct: 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGT 242
Query: 242 GVYSAEMRPDVFSNLAAAFSGCKQLKSLSGFWDVLPSYLPAVYPVCSGLTSLNLSYATVQ 301
G Y+AE+RPDV+S L+ A SGCK+L+ LSGFWD +P+YLPAVY VCS LT+LNLSYATVQ
Sbjct: 243 GGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQ 302
Query: 302 SSDLVKLISQCPSLQRLWVLDFIEDAGLDVLAASCKDLRELRVFPSDPFGFEPNVALTER 361
S DLVKL+ QCP LQRLWVLD+IEDAGL+VLA++CKDLRELRVFPS+PF EPNVALTE+
Sbjct: 303 SYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQ 362
Query: 362 GLVSVSEGCPKLQSVLYFCRQSEMVFDRMIFIAHT 396
GLVSVS GCPKL+SVLYFCRQ M +I IA
Sbjct: 363 GLVSVSMGCPKLESVLYFCRQ--MTNAALITIARN 395
>AT4G03190.1 | Symbols: GRH1, ATGRH1, AFB1 | GRR1-like protein 1 |
chr4:1405108-1407057 REVERSE LENGTH=585
Length = 585
Score = 514 bits (1323), Expect = e-146, Method: Compositional matrix adjust.
Identities = 249/379 (65%), Positives = 305/379 (80%)
Query: 4 MVCSFPEEVLEHVFSFIQVDTDRNAISLVCKSWYEIERWCRRKVFVGNCYAVSPMIVIKR 63
M FP +VLEH+ SFI + DRN++SLVCKSW+E ER R++VFVGNCYAVSP V +R
Sbjct: 1 MGLRFPPKVLEHILSFIDSNEDRNSVSLVCKSWFETERKTRKRVFVGNCYAVSPAAVTRR 60
Query: 64 FPEVRSIALKGKPHFADFNLVPEGWGGYVCTWIAAMSRAFPWLEEIRLKRMVISDESLEL 123
FPE+RS+ LKGKPHFAD+NLVP+GWGGY WI AM+ LEEIR+KRMV++DE LE
Sbjct: 61 FPEMRSLTLKGKPHFADYNLVPDGWGGYAWPWIEAMAAKSSSLEEIRMKRMVVTDECLEK 120
Query: 124 IAKSFKNFKVLVLTSCEGFTTDGLAAIAANCRNLRELDLQESEVEDLSGHWLSHFPDSYT 183
IA SFK+FKVLVLTSCEGF+TDG+AAIAA CRNLR L+L+E VEDL G WLS+FP+S T
Sbjct: 121 IAASFKDFKVLVLTSCEGFSTDGIAAIAATCRNLRVLELRECIVEDLGGDWLSYFPESST 180
Query: 184 SLVSLNISCLSNEVSLSALERLLGRCPNMKTLRLNRAVPLDRLPNLLRQCPQLVELGTGV 243
SLVSL+ SCL +EV +S LERL+ R PN+K+L+LN AV LD L +LLR PQL ELGTG
Sbjct: 181 SLVSLDFSCLDSEVKISDLERLVSRSPNLKSLKLNPAVTLDGLVSLLRCAPQLTELGTGS 240
Query: 244 YSAEMRPDVFSNLAAAFSGCKQLKSLSGFWDVLPSYLPAVYPVCSGLTSLNLSYATVQSS 303
++A+++P+ FS L+ AFS CKQL+SLSG WDVLP YLPA+Y VC GLTSLNLSYATV+
Sbjct: 241 FAAQLKPEAFSKLSEAFSNCKQLQSLSGLWDVLPEYLPALYSVCPGLTSLNLSYATVRMP 300
Query: 304 DLVKLISQCPSLQRLWVLDFIEDAGLDVLAASCKDLRELRVFPSDPFGFEPNVALTERGL 363
DLV+L+ +C LQ+LWV+D IED GL+ +A+ CK+LRELRVFPS+P N+ LTE+GL
Sbjct: 301 DLVELLRRCSKLQKLWVMDLIEDKGLEAVASYCKELRELRVFPSEPDLDATNIPLTEQGL 360
Query: 364 VSVSEGCPKLQSVLYFCRQ 382
V VS+GC KL+SVLYFC Q
Sbjct: 361 VFVSKGCRKLESVLYFCVQ 379
>AT1G12820.1 | Symbols: AFB3 | auxin signaling F-box 3 |
chr1:4368879-4370780 REVERSE LENGTH=577
Length = 577
Score = 479 bits (1232), Expect = e-135, Method: Compositional matrix adjust.
Identities = 230/377 (61%), Positives = 294/377 (77%), Gaps = 2/377 (0%)
Query: 8 FPEEVLEHVFSFIQVDTDRNAISLVCKSWYEIERWCRRKVFVGNCYAVSPMIVIKRFPEV 67
FP+EV+EHVF F+ DRN+ISLVCKSW++IER+ R++VF+GNCYA++P +I+RFP +
Sbjct: 4 FPDEVIEHVFDFVASHKDRNSISLVCKSWHKIERFSRKEVFIGNCYAINPERLIRRFPCL 63
Query: 68 RSIALKGKPHFADFNLVPEGWGGYVCTWIAAMSRAFPWLEEIRLKRMVISDESLELIAKS 127
+S+ LKGKPHFADFNLVP WGG+V WI A++R+ LEE+RLKRMV++DESL+L+++S
Sbjct: 64 KSLTLKGKPHFADFNLVPHEWGGFVHPWIEALARSRVGLEELRLKRMVVTDESLDLLSRS 123
Query: 128 FKNFKVLVLTSCEGFTTDGLAAIAANCRNLRELDLQESEVEDLSGHWLSHFPDSYTSLVS 187
F NFK LVL SCEGFTTDGLA+IAANCR+LRELDLQE+E++D G WL+ FPDS T+L+S
Sbjct: 124 FANFKSLVLVSCEGFTTDGLASIAANCRHLRELDLQENEIDDHRGQWLNCFPDSCTTLMS 183
Query: 188 LNISCLSNEVSLSALERLLGRCPNMKTLRLNRAVPLDRLPNLLRQCPQLVELGTGVYSAE 247
LN +CL E +++ALERL+ R PN+K+L+LNRAVPLD L L+ PQLV+LG G Y E
Sbjct: 184 LNFACLKGETNVAALERLVARSPNLKSLKLNRAVPLDALARLMSCAPQLVDLGVGSYENE 243
Query: 248 MRPDVFSNLAAAFSGCKQLKSLSGFWDVLPSYLPAVYPVCSGLTSLNLSYAT-VQSSDLV 306
P+ F+ L A L+SLSGF +V P LPA YP+C L SLNLSYA +Q + L+
Sbjct: 244 PDPESFAKLMTAIKKYTSLRSLSGFLEVAPLCLPAFYPICQNLISLNLSYAAEIQGNHLI 303
Query: 307 KLISQCPSLQRLWVLDFIEDAGLDVLAASCKDLRELRVFPSDPFGFEPNVA-LTERGLVS 365
KLI C LQRLW+LD I D GL V+AA+CK+L+ELRVFPSD G E N A +TE GLV+
Sbjct: 304 KLIQLCKRLQRLWILDSIGDKGLAVVAATCKELQELRVFPSDVHGEEDNNASVTEVGLVA 363
Query: 366 VSEGCPKLQSVLYFCRQ 382
+S GCPKL S+LYFC+Q
Sbjct: 364 ISAGCPKLHSILYFCKQ 380
>AT3G26810.1 | Symbols: AFB2 | auxin signaling F-box 2 |
chr3:9868342-9870464 FORWARD LENGTH=575
Length = 575
Score = 475 bits (1223), Expect = e-134, Method: Compositional matrix adjust.
Identities = 226/376 (60%), Positives = 290/376 (77%), Gaps = 2/376 (0%)
Query: 8 FPEEVLEHVFSFIQVDTDRNAISLVCKSWYEIERWCRRKVFVGNCYAVSPMIVIKRFPEV 67
FP+EV+EHVF F+ DRNAISLVCKSWY+IER+ R+KVF+GNCYA++P +++RFP +
Sbjct: 4 FPDEVIEHVFDFVTSHKDRNAISLVCKSWYKIERYSRQKVFIGNCYAINPERLLRRFPCL 63
Query: 68 RSIALKGKPHFADFNLVPEGWGGYVCTWIAAMSRAFPWLEEIRLKRMVISDESLELIAKS 127
+S+ LKGKPHFADFNLVP WGG+V WI A++R+ LEE+RLKRMV++DESLEL+++S
Sbjct: 64 KSLTLKGKPHFADFNLVPHEWGGFVLPWIEALARSRVGLEELRLKRMVVTDESLELLSRS 123
Query: 128 FKNFKVLVLTSCEGFTTDGLAAIAANCRNLRELDLQESEVEDLSGHWLSHFPDSYTSLVS 187
F NFK LVL SCEGFTTDGLA+IAANCR+LR+LDLQE+E++D G WLS FPD+ T+LV+
Sbjct: 124 FVNFKSLVLVSCEGFTTDGLASIAANCRHLRDLDLQENEIDDHRGQWLSCFPDTCTTLVT 183
Query: 188 LNISCLSNEVSLSALERLLGRCPNMKTLRLNRAVPLDRLPNLLRQCPQLVELGTGVYSAE 247
LN +CL E +L ALERL+ R PN+K+L+LNRAVPLD L L+ PQ+V+LG G Y +
Sbjct: 184 LNFACLEGETNLVALERLVARSPNLKSLKLNRAVPLDALARLMACAPQIVDLGVGSYEND 243
Query: 248 MRPDVFSNLAAAFSGCKQLKSLSGFWDVLPSYLPAVYPVCSGLTSLNLSYAT-VQSSDLV 306
+ + L A C L+SLSGF + P L A +P+C LTSLNLSYA + S L+
Sbjct: 244 PDSESYLKLMAVIKKCTSLRSLSGFLEAAPHCLSAFHPICHNLTSLNLSYAAEIHGSHLI 303
Query: 307 KLISQCPSLQRLWVLDFIEDAGLDVLAASCKDLRELRVFPSDPFGFEPNVALTERGLVSV 366
KLI C LQRLW+LD I D GL+V+A++CK+L+ELRVFPSD G N A+TE GLV++
Sbjct: 304 KLIQHCKKLQRLWILDSIGDKGLEVVASTCKELQELRVFPSDLLG-GGNTAVTEEGLVAI 362
Query: 367 SEGCPKLQSVLYFCRQ 382
S GCPKL S+LYFC+Q
Sbjct: 363 SAGCPKLHSILYFCQQ 378
>AT5G49980.1 | Symbols: AFB5 | auxin F-box protein 5 |
chr5:20334420-20336531 REVERSE LENGTH=619
Length = 619
Score = 362 bits (930), Expect = e-100, Method: Compositional matrix adjust.
Identities = 184/375 (49%), Positives = 244/375 (65%), Gaps = 3/375 (0%)
Query: 10 EEVLEHVFSFIQVDTDRNAISLVCKSWYEIERWCRRKVFVGNCYAVSPMIVIKRFPEVRS 69
E VLE+V F+ DRNA SLVCKSW+ +E R +VF+GNCYA+SP + +RF VRS
Sbjct: 56 ENVLENVLQFLDSRCDRNAASLVCKSWWRVEALTRSEVFIGNCYALSPARLTQRFKRVRS 115
Query: 70 IALKGKPHFADFNLVPEGWGGYVCTWIAAMSRAFPWLEEIRLKRMVISDESLELIAKSFK 129
+ LKGKP FADFNL+P WG W++ M++A+P LE++ LKRM ++D+ L L+A SF
Sbjct: 116 LVLKGKPRFADFNLMPPDWGANFAPWVSTMAQAYPCLEKVDLKRMFVTDDDLALLADSFP 175
Query: 130 NFKVLVLTSCEGFTTDGLAAIAANCRNLRELDLQESEVEDLSGHWLSHFPDSYTSLVSLN 189
FK L+L CEGF T G++ +A CR L+ LDL ESEV D W+S FP+ T L SL
Sbjct: 176 GFKELILVCCEGFGTSGISIVANKCRKLKVLDLIESEVTDDEVDWISCFPEDVTCLESLA 235
Query: 190 ISCLSNEVSLSALERLLGRCPNMKTLRLNRAVPLDRLPNLLRQCPQLVELGTGVYSAEMR 249
C+ ++ ALE L+ R P +K LRLNR V L L LL PQL LGTG +S +
Sbjct: 236 FDCVEAPINFKALEGLVARSPFLKKLRLNRFVSLVELHRLLLGAPQLTSLGTGSFSHDEE 295
Query: 250 P--DVFSNLAAAFSGCKQLKSLSGFWDVLPSYLPAVYPVCSGLTSLNLSYATVQSSDLVK 307
P + + AAAF CK + LSGF +++P YLPA++PVC+ LTSLN SYA +
Sbjct: 296 PQSEQEPDYAAAFRACKSVVCLSGFRELMPEYLPAIFPVCANLTSLNFSYANISPDMFKP 355
Query: 308 LISQCPSLQRLWVLDFIEDAGLDVLAASCKDLRELRVFPSDPFGFEPNVALTERGLVSVS 367
+I C LQ W LD I D GL +AA+CK+LRELR+FP DP + ++E GL ++S
Sbjct: 356 IILNCHKLQVFWALDSICDEGLQAVAATCKELRELRIFPFDPRE-DSEGPVSELGLQAIS 414
Query: 368 EGCPKLQSVLYFCRQ 382
EGC KL+S+LYFC++
Sbjct: 415 EGCRKLESILYFCQR 429
>AT4G24390.1 | Symbols: | RNI-like superfamily protein |
chr4:12613909-12615966 REVERSE LENGTH=623
Length = 623
Score = 362 bits (928), Expect = e-100, Method: Compositional matrix adjust.
Identities = 184/379 (48%), Positives = 245/379 (64%), Gaps = 11/379 (2%)
Query: 10 EEVLEHVFSFIQVDTDRNAISLVCKSWYEIERWCRRKVFVGNCYAVSPMIVIKRFPEVRS 69
E VLE+V F+ DRNA+SLVC+SWY +E R +VF+GNCY++SP +I RF VRS
Sbjct: 56 ENVLENVLQFLTSRCDRNAVSLVCRSWYRVEAQTRLEVFIGNCYSLSPARLIHRFKRVRS 115
Query: 70 IALKGKPHFADFNLVPEGWGGYVCTWIAAMSRAFPWLEEIRLKRMVISDESLELIAKSFK 129
+ LKGKP FADFNL+P WG W+AA ++A+PWLE++ LKRM ++D+ L L+A+SF
Sbjct: 116 LVLKGKPRFADFNLMPPNWGAQFSPWVAATAKAYPWLEKVHLKRMFVTDDDLALLAESFP 175
Query: 130 NFKVLVLTSCEGFTTDGLAAIAANCRNLRELDLQESEVEDLSGHWLSHFPDSYTSLVSLN 189
FK L L CEGF T G+A +A CR L+ LDL ESEV D W+S FP+ T L SL+
Sbjct: 176 GFKELTLVCCEGFGTSGIAIVANKCRQLKVLDLMESEVTDDELDWISCFPEGETHLESLS 235
Query: 190 ISCLSNEVSLSALERLLGRCPNMKTLRLNRAVPLDRLPNLLRQCPQLVELGTGVYS---- 245
C+ + ++ ALE L+ R P +K LR NR V L+ L L+ + PQL LGTG +S
Sbjct: 236 FDCVESPINFKALEELVVRSPFLKKLRTNRFVSLEELHRLMVRAPQLTSLGTGSFSPDNV 295
Query: 246 --AEMRPDVFSNLAAAFSGCKQLKSLSGFWDVLPSYLPAVYPVCSGLTSLNLSYATVQSS 303
E +PD AAAF CK + LSGF + P YL A+ VC+ LTSLN SYA +
Sbjct: 296 PQGEQQPD----YAAAFRACKSIVCLSGFREFRPEYLLAISSVCANLTSLNFSYANISPH 351
Query: 304 DLVKLISQCPSLQRLWVLDFIEDAGLDVLAASCKDLRELRVFPSDPFGFEPNVALTERGL 363
L +IS C +++ W LD I D GL +AA+CK+LRELR+FP DP + ++ GL
Sbjct: 352 MLKPIISNCHNIRVFWALDSIRDEGLQAVAATCKELRELRIFPFDPRE-DSEGPVSGVGL 410
Query: 364 VSVSEGCPKLQSVLYFCRQ 382
++SEGC KL+S+LYFC+
Sbjct: 411 QAISEGCRKLESILYFCQN 429
>AT4G24390.2 | Symbols: | RNI-like superfamily protein |
chr4:12613909-12615966 REVERSE LENGTH=623
Length = 623
Score = 362 bits (928), Expect = e-100, Method: Compositional matrix adjust.
Identities = 184/379 (48%), Positives = 245/379 (64%), Gaps = 11/379 (2%)
Query: 10 EEVLEHVFSFIQVDTDRNAISLVCKSWYEIERWCRRKVFVGNCYAVSPMIVIKRFPEVRS 69
E VLE+V F+ DRNA+SLVC+SWY +E R +VF+GNCY++SP +I RF VRS
Sbjct: 56 ENVLENVLQFLTSRCDRNAVSLVCRSWYRVEAQTRLEVFIGNCYSLSPARLIHRFKRVRS 115
Query: 70 IALKGKPHFADFNLVPEGWGGYVCTWIAAMSRAFPWLEEIRLKRMVISDESLELIAKSFK 129
+ LKGKP FADFNL+P WG W+AA ++A+PWLE++ LKRM ++D+ L L+A+SF
Sbjct: 116 LVLKGKPRFADFNLMPPNWGAQFSPWVAATAKAYPWLEKVHLKRMFVTDDDLALLAESFP 175
Query: 130 NFKVLVLTSCEGFTTDGLAAIAANCRNLRELDLQESEVEDLSGHWLSHFPDSYTSLVSLN 189
FK L L CEGF T G+A +A CR L+ LDL ESEV D W+S FP+ T L SL+
Sbjct: 176 GFKELTLVCCEGFGTSGIAIVANKCRQLKVLDLMESEVTDDELDWISCFPEGETHLESLS 235
Query: 190 ISCLSNEVSLSALERLLGRCPNMKTLRLNRAVPLDRLPNLLRQCPQLVELGTGVYS---- 245
C+ + ++ ALE L+ R P +K LR NR V L+ L L+ + PQL LGTG +S
Sbjct: 236 FDCVESPINFKALEELVVRSPFLKKLRTNRFVSLEELHRLMVRAPQLTSLGTGSFSPDNV 295
Query: 246 --AEMRPDVFSNLAAAFSGCKQLKSLSGFWDVLPSYLPAVYPVCSGLTSLNLSYATVQSS 303
E +PD AAAF CK + LSGF + P YL A+ VC+ LTSLN SYA +
Sbjct: 296 PQGEQQPD----YAAAFRACKSIVCLSGFREFRPEYLLAISSVCANLTSLNFSYANISPH 351
Query: 304 DLVKLISQCPSLQRLWVLDFIEDAGLDVLAASCKDLRELRVFPSDPFGFEPNVALTERGL 363
L +IS C +++ W LD I D GL +AA+CK+LRELR+FP DP + ++ GL
Sbjct: 352 MLKPIISNCHNIRVFWALDSIRDEGLQAVAATCKELRELRIFPFDPRE-DSEGPVSGVGL 410
Query: 364 VSVSEGCPKLQSVLYFCRQ 382
++SEGC KL+S+LYFC+
Sbjct: 411 QAISEGCRKLESILYFCQN 429
>AT2G39940.1 | Symbols: COI1 | RNI-like superfamily protein |
chr2:16672848-16675486 REVERSE LENGTH=592
Length = 592
Score = 215 bits (547), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 123/375 (32%), Positives = 206/375 (54%), Gaps = 11/375 (2%)
Query: 10 EEVLEHVFSFIQVDTDRNAISLVCKSWYEIERWCRRKVFVGNCYAVSPMIVIKRFPEVRS 69
++V+E V ++I DR++ SLVC+ W++I+ R V + CY +P + +RFP +RS
Sbjct: 18 DDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSRRFPNLRS 77
Query: 70 IALKGKPHFADFNLVPEGWGGYVCTWIAAMSRAFPWLEEIRLKRMVISDESLELIAKS-F 128
+ LKGKP A FNL+PE WGGYV W+ +S L+ + +RM++SD L+ +AK+
Sbjct: 78 LKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARA 137
Query: 129 KNFKVLVLTSCEGFTTDGLAAIAANCRNLRELDLQESEVEDLSGHWLSHFPDSYTSLVSL 188
+ + L L C GFTTDGL +I +CR ++ L ++ES + G WL TSL L
Sbjct: 138 DDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVL 197
Query: 189 NISCLS-NEVSLSALERLLGRCPNMKTLRLNRAVPLDRLPNLLRQCPQLVELGTGVYSAE 247
N ++S LE + C ++ ++++ L+ L + L E G + +
Sbjct: 198 NFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNED 256
Query: 248 M-RPDVFSNLAAAFSGCKQLKSLSGFWDVLPSYLPAVYPVCSGLTSLNLSYATVQSSDLV 306
+ P+ + NL C+ S G P+ +P ++P + + L+L YA +++ D
Sbjct: 257 IGMPEKYMNLVFPRKLCRLGLSYMG-----PNEMPILFPFAAQIRKLDLLYALLETEDHC 311
Query: 307 KLISQCPSLQRLWVLDFIEDAGLDVLAASCKDLRELRV-FPSDPFGFEPNVAL-TERGLV 364
LI +CP+L+ L + I D GL+VLA CK L+ LR+ +D G E L ++RGL+
Sbjct: 312 TLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLI 371
Query: 365 SVSEGCPKLQSVLYF 379
++++GC +L+ + +
Sbjct: 372 ALAQGCQELEYMAVY 386
>AT1G47056.1 | Symbols: VFB1 | VIER F-box proteine 1 |
chr1:17276103-17277659 REVERSE LENGTH=518
Length = 518
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 95/392 (24%), Positives = 159/392 (40%), Gaps = 107/392 (27%)
Query: 7 SFPEEVLEHVFSFIQVDTDRNAISLVCKSWYEIERWCRRKVFVGNCYAVSPMI-----VI 61
S P+E L VF F+ +R +LVC+ W +E R ++ + +A S +I +
Sbjct: 42 SLPDECLALVFQFLN-SGNRKRCALVCRRWMIVEGQNRYRLSL---HARSDLITSIPSLF 97
Query: 62 KRFPEVRSIALKGKPHFADFNLVPEGWGGYVCTWIAAMSRAFPWLEEIRLKRMVISDESL 121
RF V ++LK + + I DE+L
Sbjct: 98 SRFDSVTKLSLK-----------------------------------CDRRSVSIGDEAL 122
Query: 122 ELIAKSFKNFKVLVLTSCEGFTTDGLAAIAANCRNLRELDLQESEVEDLSGHWLSHFPDS 181
I+ +N K L L +C T G+AA A NC++L+
Sbjct: 123 VKISLRCRNLKRLKLRACRELTDVGMAAFAENCKDLKIF--------------------- 161
Query: 182 YTSLVSLNISCLSNEVSLSALERLLGRCPNMKTLRLNRAVPLDRLPNLLRQCPQLVELGT 241
SC S + ++ +L C N++ L + RL P+++ G
Sbjct: 162 ---------SCGSCDFGAKGVKAVLDHCSNLEEL------SIKRLRGFTDIAPEMI--GP 204
Query: 242 GVYSAEMRPDVFSNL------AAAFSGCKQLKSL-----SGFWDVLPSYLPAVYPVCSGL 290
GV ++ ++ L G K LKSL SG WD+L L + G+
Sbjct: 205 GVAASSLKSICLKELYNGQCFGPVIVGAKNLKSLKLFRCSGDWDLL---LQEMSGKDHGV 261
Query: 291 TSLNLSYATVQSSDL-VKLISQCPSLQRLWVLDFIE--DAGLDVLAASCKDLRELRVFPS 347
++L +Q SD+ + IS C SL+ L ++ E + GL +A CK LR+L +
Sbjct: 262 VEIHLER--MQVSDVALSAISYCSSLESLHLVKTPECTNFGLAAIAEKCKRLRKLHI--- 316
Query: 348 DPFGFEPNVALTERGLVSVSEGCPKLQSVLYF 379
G++ N+ + + GLV+V++ C +LQ ++
Sbjct: 317 --DGWKANL-IGDEGLVAVAKFCSQLQELVLI 345
>AT4G15475.1 | Symbols: | F-box/RNI-like superfamily protein |
chr4:8845927-8848701 FORWARD LENGTH=610
Length = 610
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 88/400 (22%), Positives = 162/400 (40%), Gaps = 51/400 (12%)
Query: 8 FPEEVLEHVFSFIQVDTDRNAISLVCKSWYEIERWCRRKVFVGNCYAVSPMIVI--KRFP 65
PEE++ +F ++ +R+A SLVCK W +ER+ R + +G ++ I + +RF
Sbjct: 11 LPEELILEIFRRLESKPNRDACSLVCKRWLSLERFSRTTLRIGASFSPDDFISLLSRRFL 70
Query: 66 EVRSIALKGKPHFADFNLVPEGWGGYVCTWIAAMSRAFPWLEEIRLKRMVISDES----- 120
+ SI + + + +L + R KR ++D++
Sbjct: 71 YITSIHVDERISVSLPSL----------SPSPKRKRGRDSSSPSSSKRKKLTDKTHSGAE 120
Query: 121 -----------LELIAKSFKNFKVLVLTSCEGFTTDGLAAIAANCRNLRELDLQESEVED 169
L +A F + L L C ++ GL ++A C +L+ LDLQ V D
Sbjct: 121 NVESSSLTDTGLTALANGFPRIENLSLIWCPNVSSVGLCSLAQKCTSLKSLDLQGCYVGD 180
Query: 170 LSGHWLSHFPDSYTSLVSLNISCLSNEVSLSALERLLGRCPNMKTLRLNRAVPLD--RLP 227
L+ L LN+ + ++ ++G ++K++ + + + L
Sbjct: 181 ---QGLAAVGKFCKQLEELNLRFCEGLTDVGVIDLVVGCSKSLKSIGVAASAKITDLSLE 237
Query: 228 NLLRQCPQLVELGTGVYSAEMRPDVFSNLAAAFSGCKQLKSLS-GFWDVLPSYLPAVYPV 286
+ C L L +E D L A GC +LK+L V AV +
Sbjct: 238 AVGSHCKLLEVL---YLDSEYIHD--KGLIAVAQGCHRLKNLKLQCVSVTDVAFAAVGEL 292
Query: 287 CSGLTSLNL-SYATVQSSDLVKLISQCPSLQRLWVLD--FIEDAGLDVLAASCKDLRELR 343
C+ L L L S+ + + L+ L + D F+ GL+ +A CK+L +
Sbjct: 293 CTSLERLALYSFQHFTDKGMRAIGKGSKKLKDLTLSDCYFVSCKGLEAIAHGCKELERVE 352
Query: 344 VFPSDPFGFEPNVALTERGLVSVSEGCPKLQSV-LYFCRQ 382
+ G RG+ ++ + CP+L+ + L +C++
Sbjct: 353 INGCHNIG--------TRGIEAIGKSCPRLKELALLYCQR 384
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 104/247 (42%), Gaps = 46/247 (18%)
Query: 96 IAAMSRAFPWLEEIRL---KRMVISDESLELIAKSFKNFKVLVLTSCEGFTTDGLAAIAA 152
I A+ ++ P L+E+ L +R I + +L+ I K K+ ++L L C G + +IA
Sbjct: 364 IEAIGKSCPRLKELALLYCQR--IGNSALQEIGKGCKSLEILHLVDCSGIGDIAMCSIAK 421
Query: 153 NCRNLRELDLQESEVEDLSGHWLSHFPDSYTSLVSLNISCLS-NEVSLSALERLLGRCPN 211
CRNL++L ++ + ++S+ C S E+SL R + N
Sbjct: 422 GCRNLKKLHIRRC------------YEIGNKGIISIGKHCKSLTELSL----RFCDKVGN 465
Query: 212 MKTLRLNRAVPLDRL-------------PNLLRQCPQLVELGTGVYS--AEMRPDVFSNL 256
+ + + L +L + R CPQL L V +M P L
Sbjct: 466 KALIAIGKGCSLQQLNVSGCNQISDAGITAIARGCPQLTHLDISVLQNIGDM-P-----L 519
Query: 257 AAAFSGCKQLKS--LSGFWDVLPSYLPAVYPVCSGLTSLNLSYA-TVQSSDLVKLISQCP 313
A GC LK LS + + L + C L + ++ Y + S+ + ++S CP
Sbjct: 520 AELGEGCPMLKDLVLSHCHHITDNGLNHLVQKCKLLETCHMVYCPGITSAGVATVVSSCP 579
Query: 314 SLQRLWV 320
++++ +
Sbjct: 580 HIKKVLI 586
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 68/290 (23%), Positives = 114/290 (39%), Gaps = 49/290 (16%)
Query: 116 ISDESLELIAKSFKNFKVLVLTSCEGFTTDGLAAIAANCRNLRELDLQESEVED------ 169
I+D SLE + K +VL L S E GL A+A C L+ L LQ V D
Sbjct: 231 ITDLSLEAVGSHCKLLEVLYLDS-EYIHDKGLIAVAQGCHRLKNLKLQCVSVTDVAFAAV 289
Query: 170 ---------LSGHWLSHFPDSYTSLVSLNISCLSNE-------VSLSALERLLGRCPNMK 213
L+ + HF D + L + VS LE + C ++
Sbjct: 290 GELCTSLERLALYSFQHFTDKGMRAIGKGSKKLKDLTLSDCYFVSCKGLEAIAHGCKELE 349
Query: 214 TLRLN--RAVPLDRLPNLLRQCPQLVELGTGVYSAEMRPDVFSNLAAAFSGCKQLKSL-- 269
+ +N + + + + CP+L EL +Y + + GCK L+ L
Sbjct: 350 RVEINGCHNIGTRGIEAIGKSCPRLKELAL-LYCQRIGNSALQEIG---KGCKSLEILHL 405
Query: 270 ---SGFWDVLPSYLPAVYPVCSGLTSLNLSYA-TVQSSDLVKLISQCPSLQRLWVLDFIE 325
SG D+ + ++ C L L++ + + ++ + C SL L L F +
Sbjct: 406 VDCSGIGDI---AMCSIAKGCRNLKKLHIRRCYEIGNKGIISIGKHCKSLTELS-LRFCD 461
Query: 326 DAGLDVLAASCK--DLRELRVFPSDPFGFEPNVALTERGLVSVSEGCPKL 373
G L A K L++L V + +++ G+ +++ GCP+L
Sbjct: 462 KVGNKALIAIGKGCSLQQLNVSGCNQ--------ISDAGITAIARGCPQL 503
>AT5G67250.1 | Symbols: SKIP2, VFB4 | SKP1/ASK1-interacting protein
2 | chr5:26831677-26833260 REVERSE LENGTH=527
Length = 527
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 97/383 (25%), Positives = 157/383 (40%), Gaps = 90/383 (23%)
Query: 8 FPEEVLEHVFSFIQVDTDRNAISLVCKSWYEIERWCRRKVFVGNCYAVSPMI--VIKRFP 65
P+E L HVF F+ DR SLVCK W ++ R ++ + +S + + RF
Sbjct: 46 LPDECLAHVFQFLGAG-DRKRCSLVCKRWLLVDGQSRHRLSLDAKDEISSFLTSMFNRFD 104
Query: 66 EVRSIALKGKPHFADFNLVPEGWGGYVCTWIAAMSRAFPWLEEIRLKR-MVISDESLELI 124
V +AL+ +L E +A +S L ++L+ I+D +E
Sbjct: 105 SVTKLALRCDRK--SVSLSDEA--------LAMISVRCLNLTRVKLRGCREITDLGMEDF 154
Query: 125 AKSFKNFKVLVLTSCEGFTTDGLAAIAANCRNLRELDLQESEVEDLSG----HWLSHFPD 180
AK+ KN K L + SC F G+ A+ +C+ L EL V+ L G L H PD
Sbjct: 155 AKNCKNLKKLSVGSCN-FGAKGVNAMLEHCKLLEEL-----SVKRLRGIHEAAELIHLPD 208
Query: 181 SYTSLVSLNISCLSNEVSLSALERLLGRCPNMKTLRLNRAVPLDRLPNLLRQCPQLVELG 240
+S SL CL V+ E LL +KTL++ R +
Sbjct: 209 DASS-SSLRSICLKELVNGQVFEPLLATTRTLKTLKIIRCL------------------- 248
Query: 241 TGVYSAEMRPDVFSNLAAAFSGCKQLKSLSGFWDVLPSYLPAVYPVCSGLTSLN-LSYAT 299
G WD + + +G +SL+ +
Sbjct: 249 ------------------------------GDWD------KVLQMIANGKSSLSEIHLER 272
Query: 300 VQSSDL-VKLISQCPSLQRLWVLDFIE--DAGLDVLAASCKDLRELRVFPSDPFGFEPNV 356
+Q SD+ + IS+C +++ L ++ E + GL +A CK LR+L + G+ N
Sbjct: 273 LQVSDIGLSAISKCSNVETLHIVKTPECSNFGLIYVAERCKLLRKLHI-----DGWRTN- 326
Query: 357 ALTERGLVSVSEGCPKLQSVLYF 379
+ + GL+SV++ C LQ ++
Sbjct: 327 RIGDEGLLSVAKHCLNLQELVLI 349
>AT2G36370.1 | Symbols: | ubiquitin-protein ligases |
chr2:15247894-15252800 FORWARD LENGTH=898
Length = 898
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 72/270 (26%), Positives = 118/270 (43%), Gaps = 52/270 (19%)
Query: 130 NFKVLVLTSCEGFTTDGLAAIAANCRNLRELDLQESEVEDLSGHWLSHFPDSYTSLVSLN 189
N + L ++ CEG + L + + + ++ L L++++V D L FP S +L +L+
Sbjct: 505 NLQTLHMSKCEGISETSLLNLITHSQKMKSLCLRDTKVSD---SVLCEFPGS--TLEALD 559
Query: 190 ISCLSNEVSLSALERLLGRCPNMKTLRLNRAVPLDRLPNLLRQCPQLVELGTGVYSAEMR 249
IS + +S AL R++ R PN+KTL+ R C L++L + R
Sbjct: 560 IS--NTTISWMALARVISRNPNLKTLK-------------ARGCKNLLQL-----EVDGR 599
Query: 250 PDVFSNLAAAFSGCKQLKSLSGF------WDVLPSYLPAVYPVCSGLTSLNLSYATVQSS 303
D FS L + K L SG W ++ P S L +++
Sbjct: 600 TDNFSPLVSGQEVFKCLSKGSGLEELEIGWGFSYFSFESLRPAASFLRVISVGLGASLGE 659
Query: 304 DLVKLI-SQCPSLQRLWVLDF--IEDAGLDVLAASCKDLRELRV------FPSDPFGFE- 353
D++KL+ S CP L+ + VL F I D+ L + S K L+EL + F F
Sbjct: 660 DVLKLLPSTCPLLESI-VLHFQEISDSALTSVLTSLKHLQELALSYCFGEISLQSFKFSM 718
Query: 354 PNVA----------LTERGLVSVSEGCPKL 373
PN+ +T L+ +++ CP L
Sbjct: 719 PNLRKLRLERVTRWMTNDDLLVLTQSCPNL 748
>AT5G23340.1 | Symbols: | RNI-like superfamily protein |
chr5:7856314-7857983 FORWARD LENGTH=405
Length = 405
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 80/352 (22%), Positives = 142/352 (40%), Gaps = 59/352 (16%)
Query: 7 SFPEEVLEHVFSFIQVDTDRNAISLVCKSWYEIERWCRRKVFVGNCYAVSPMIVIKRFPE 66
+ ++ L V S + D D+ LVCK W ++ R+K
Sbjct: 9 ALTDDELRWVLSRLDSDKDKEVFGLVCKRWLNLQSTDRKK-------------------- 48
Query: 67 VRSIALKGKPHFADFNLVPEGWGGYVCTWIAAMSRAFPWLEEIRLKRMV-------ISDE 119
+A + PH + ++ F + E+ L + + ++D
Sbjct: 49 ---LAARAGPHM-----------------LRRLASRFTQIVELDLSQSISRSFYPGVTDS 88
Query: 120 SLELIAKSFKNFKVLVLTSCEGFTTDGLAAIAANCRNLRELDLQESEVEDLSGHWLSHFP 179
L +I++ FK +VL L +C+G T GLA+I L+ LD+ S LS LS
Sbjct: 89 DLAVISEGFKFLRVLNLHNCKGITDTGLASIGRCLSLLQFLDV--SYCRKLSDKGLSAVA 146
Query: 180 DSYTSLVSLNISCLSNEVSLSALERLLGRCPNMKTLRLNRAVPL--DRLPNLLRQCPQLV 237
+ L +L+++ ++ +L+ L RC +++ L L + L +L++ C ++
Sbjct: 147 EGCHDLRALHLA-GCRFITDESLKSLSERCRDLEALGLQGCTNITDSGLADLVKGCRKIK 205
Query: 238 ELGTGVYSAEMRPDVFSNLAAAFSGCKQLKSLSGFWDVLPSYLPAVYPVCSGLTSLNLSY 297
L S V S A S K LK L + V + ++ C L +L +
Sbjct: 206 SLDINKCSNVGDAGVSSVAKACASSLKTLKLLD-CYKVGNESISSLAQFCKNLETLIIGG 264
Query: 298 ATVQSSDLVKLISQC--PSLQRL---WVLDFIEDAGLDVLAASCKDLRELRV 344
S + + L++ SL+ L W L+ I D+ L + CK+L L +
Sbjct: 265 CRDISDESIMLLADSCKDSLKNLRMDWCLN-ISDSSLSCILKQCKNLEALDI 315
>AT1G77000.2 | Symbols: SKP2B | RNI-like superfamily protein |
chr1:28940888-28942401 FORWARD LENGTH=360
Length = 360
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 62/248 (25%), Positives = 109/248 (43%), Gaps = 39/248 (15%)
Query: 8 FPEEVLEHVFSFIQVDTDRNAI--SLVCKSWYE-----IER----WCRRKVFVGNCYAVS 56
P E+L + + + DR I S +C W + + R WC++ + N +S
Sbjct: 31 IPVELLMKILNLVD---DRTVIIASCICSGWRDAVSLGLTRLSLSWCKKNM---NSLVLS 84
Query: 57 PMIVIKRFPEVRSIALK-GKPHFADFNLVPEGWGGYVCTWIAAMSRAFPWLEEIRL-KRM 114
+ +F +++++ L+ KP D + A++ L+++ L K
Sbjct: 85 ---LAPKFVKLQTLVLRQDKPQLED-------------NAVEAIANHCHELQDLDLSKSS 128
Query: 115 VISDESLELIAKSFKNFKVLVLTSCEGFTTDGLAAIAANCRNLRELDLQESEVEDLSGHW 174
I+D SL +A+ N L L+ C F+ LA + CR L+ L+L VE +S +
Sbjct: 129 KITDHSLYSLARGCTNLTKLNLSGCTSFSDTALAHLTRFCRKLKILNLCGC-VEAVSDNT 187
Query: 175 LSHFPDSYTSLVSLNISCLSNEVSLSALERLLGRCPNMKTLRLNRAVPL--DRLPNLLRQ 232
L ++ L SLN+ N +S + L CP+++TL L V + + + L +
Sbjct: 188 LQAIGENCNQLQSLNLGWCEN-ISDDGVMSLAYGCPDLRTLDLCSCVLITDESVVALANR 246
Query: 233 CPQLVELG 240
C L LG
Sbjct: 247 CIHLRSLG 254
>AT1G77000.1 | Symbols: ATSKP2;2, SKP2B | RNI-like superfamily
protein | chr1:28940888-28942401 FORWARD LENGTH=360
Length = 360
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 62/248 (25%), Positives = 109/248 (43%), Gaps = 39/248 (15%)
Query: 8 FPEEVLEHVFSFIQVDTDRNAI--SLVCKSWYE-----IER----WCRRKVFVGNCYAVS 56
P E+L + + + DR I S +C W + + R WC++ + N +S
Sbjct: 31 IPVELLMKILNLVD---DRTVIIASCICSGWRDAVSLGLTRLSLSWCKKNM---NSLVLS 84
Query: 57 PMIVIKRFPEVRSIALK-GKPHFADFNLVPEGWGGYVCTWIAAMSRAFPWLEEIRL-KRM 114
+ +F +++++ L+ KP D + A++ L+++ L K
Sbjct: 85 ---LAPKFVKLQTLVLRQDKPQLED-------------NAVEAIANHCHELQDLDLSKSS 128
Query: 115 VISDESLELIAKSFKNFKVLVLTSCEGFTTDGLAAIAANCRNLRELDLQESEVEDLSGHW 174
I+D SL +A+ N L L+ C F+ LA + CR L+ L+L VE +S +
Sbjct: 129 KITDHSLYSLARGCTNLTKLNLSGCTSFSDTALAHLTRFCRKLKILNLCGC-VEAVSDNT 187
Query: 175 LSHFPDSYTSLVSLNISCLSNEVSLSALERLLGRCPNMKTLRLNRAVPL--DRLPNLLRQ 232
L ++ L SLN+ N +S + L CP+++TL L V + + + L +
Sbjct: 188 LQAIGENCNQLQSLNLGWCEN-ISDDGVMSLAYGCPDLRTLDLCSCVLITDESVVALANR 246
Query: 233 CPQLVELG 240
C L LG
Sbjct: 247 CIHLRSLG 254