Miyakogusa Predicted Gene

Lj1g3v4765020.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4765020.1 Non Chatacterized Hit- tr|D8TJX6|D8TJX6_VOLCA
Putative uncharacterized protein OS=Volvox carteri
GN=,34.55,0.00002,coiled-coil,NULL; rRNA_processing,rRNA processing;
seg,NULL,CUFF.33313.1
         (188 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G03180.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: rRNA proce...    80   6e-16

>AT4G03180.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: rRNA
          processing (InterPro:IPR013730); Has 898 Blast hits to
          687 proteins in 142 species: Archae - 2; Bacteria - 28;
          Metazoa - 200; Fungi - 99; Plants - 63; Viruses - 0;
          Other Eukaryotes - 506 (source: NCBI BLink). |
          chr4:1403289-1404663 FORWARD LENGTH=185
          Length = 185

 Score = 80.5 bits (197), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 38/63 (60%), Positives = 51/63 (80%)

Query: 18 QLKKKKNVSRLGGSGLSLAAFAKAKSRNNNYNPAIIKRQKEFHKNAKNVNKFKKMMKREN 77
          + KK+KN+ RLGG GLSL  FA  KS NN YNP++IK+QKEF+KNAK V+KF+K +K++N
Sbjct: 19 ETKKRKNMRRLGGGGLSLQTFANMKSENNRYNPSLIKKQKEFYKNAKYVSKFRKSLKQQN 78

Query: 78 QPN 80
           P+
Sbjct: 79 IPD 81