Miyakogusa Predicted Gene

Lj1g3v4764990.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4764990.1 Non Chatacterized Hit- tr|I1JQG9|I1JQG9_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.28639
PE,90.15,0,GRR1-RELATED, ARATH,NULL; F-BOX/LEUCINE RICH REPEAT
PROTEIN,NULL; no description,NULL; RNI-like,NULL,CUFF.33310.1
         (203 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G62980.1 | Symbols: TIR1 | F-box/RNI-like superfamily protein...   340   5e-94
AT4G03190.1 | Symbols: GRH1, ATGRH1, AFB1 | GRR1-like protein 1 ...   296   6e-81
AT1G12820.1 | Symbols: AFB3 | auxin signaling F-box 3 | chr1:436...   234   3e-62
AT3G26810.1 | Symbols: AFB2 | auxin signaling F-box 2 | chr3:986...   224   2e-59
AT5G49980.1 | Symbols: AFB5 | auxin F-box protein 5 | chr5:20334...   198   2e-51
AT4G24390.1 | Symbols:  | RNI-like superfamily protein | chr4:12...   187   6e-48
AT4G24390.2 | Symbols:  | RNI-like superfamily protein | chr4:12...   187   6e-48
AT2G39940.1 | Symbols: COI1 | RNI-like superfamily protein | chr...   101   4e-22

>AT3G62980.1 | Symbols: TIR1 | F-box/RNI-like superfamily protein |
           chr3:23273479-23276181 REVERSE LENGTH=594
          Length = 594

 Score =  340 bits (871), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 169/202 (83%), Positives = 188/202 (93%), Gaps = 1/202 (0%)

Query: 1   MSNAALHTIARNRPNFTCFRLCIIEPQAPDYLTLQPLDSGFGAIVEHCKGLQRLSLSGLL 60
           M+NAAL TIARNRPN T FRLCIIEP+APDYLTL+PLD GFGAIVEHCK L+RLSLSGLL
Sbjct: 384 MTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLL 443

Query: 61  TDRVFEYIGTYGKKLEMLSLAFAGDSDLGLHHVLSGCDNLKKLEIRDCPFGDKALLANAA 120
           TD+VFEYIGTY KK+EMLS+AFAGDSDLG+HHVLSGCD+L+KLEIRDCPFGDKALLANA+
Sbjct: 444 TDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANAS 503

Query: 121 KLETMRSLWMSSCSVSYGACKLLGLKMPKLNVEVIDERGPPDSRPDSCPVEKLYIYRTIA 180
           KLETMRSLWMSSCSVS+GACKLLG KMPKLNVEVIDERG PDSRP+SCPVE+++IYRT+A
Sbjct: 504 KLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAPDSRPESCPVERVFIYRTVA 563

Query: 181 GPRMDMPGFVYRMEDDDSALRL 202
           GPR DMPGFV+ M D DS +R 
Sbjct: 564 GPRFDMPGFVWNM-DQDSTMRF 584


>AT4G03190.1 | Symbols: GRH1, ATGRH1, AFB1 | GRR1-like protein 1 |
           chr4:1405108-1407057 REVERSE LENGTH=585
          Length = 585

 Score =  296 bits (758), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 139/196 (70%), Positives = 165/196 (84%), Gaps = 1/196 (0%)

Query: 1   MSNAALHTIARNRPNFTCFRLCIIEPQAPDYLTLQPLDSGFGAIVEHCKGLQRLSLSGLL 60
            +NAAL TIAR RPN  CFRLC+IEP APDY T +PLD GF AI E C+ L+RLS+SGLL
Sbjct: 380 FTNAALFTIARKRPNLKCFRLCVIEPFAPDYKTNEPLDKGFKAIAEGCRDLRRLSVSGLL 439

Query: 61  TDRVFEYIGTYGKKLEMLSLAFAGDSDLGLHHVLSGCDNLKKLEIRDCPFGDKALLANAA 120
           +D+ F+YIG + KK+ MLS+AFAGDSDL LHH+LSGC++LKKLEIRDCPFGD ALL +AA
Sbjct: 440 SDKAFKYIGKHAKKVRMLSIAFAGDSDLMLHHLLSGCESLKKLEIRDCPFGDTALLEHAA 499

Query: 121 KLETMRSLWMSSCSVSYGACKLLGLKMPKLNVEVIDERGPPDSRPDSCPVEKLYIYRTIA 180
           KLETMRSLWMSSC VS+GACKLL  KMP+LNVEVIDE  PP+SRP+S PVE++YIYRT+A
Sbjct: 500 KLETMRSLWMSSCFVSFGACKLLSQKMPRLNVEVIDEH-PPESRPESSPVERIYIYRTVA 558

Query: 181 GPRMDMPGFVYRMEDD 196
           GPRMD P FV+ +  +
Sbjct: 559 GPRMDTPEFVWTIHKN 574


>AT1G12820.1 | Symbols: AFB3 | auxin signaling F-box 3 |
           chr1:4368879-4370780 REVERSE LENGTH=577
          Length = 577

 Score =  234 bits (597), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 114/194 (58%), Positives = 145/194 (74%), Gaps = 4/194 (2%)

Query: 1   MSNAALHTIARNRPNFTCFRLCIIEPQAPDYLTLQPLDSGFGAIVEHCKGLQRLSLSGLL 60
           M+NAAL  +A+N PNF  FRLCI+EP  PD++T Q LD GFGAIV+ CKGL+RLS+SGLL
Sbjct: 381 MTNAALIAVAKNCPNFIRFRLCILEPHKPDHITFQSLDEGFGAIVQACKGLRRLSVSGLL 440

Query: 61  TDRVFEYIGTYGKKLEMLSLAFAGDSDLGLHHVLSGCDNLKKLEIRDCPFGDKALLANAA 120
           TD+VF YIG Y ++LEMLS+AFAGD+D G+ +VL+GC  ++KLEIRD PFG+ ALLA+  
Sbjct: 441 TDQVFLYIGMYAEQLEMLSIAFAGDTDKGMLYVLNGCKKMRKLEIRDSPFGNAALLADVG 500

Query: 121 KLETMRSLWMSSCSVSYGACKLLGLKMPKLNVEVIDE---RGPPDSRPDSC-PVEKLYIY 176
           + ETMRSLWMSSC V+ G CK L    P+LNVE+I+E    G   +  D    V+KLY+Y
Sbjct: 501 RYETMRSLWMSSCEVTLGGCKRLAQNSPRLNVEIINENENNGMEQNEEDEREKVDKLYLY 560

Query: 177 RTIAGPRMDMPGFV 190
           RT+ G R D P +V
Sbjct: 561 RTVVGTRKDAPPYV 574


>AT3G26810.1 | Symbols: AFB2 | auxin signaling F-box 2 |
           chr3:9868342-9870464 FORWARD LENGTH=575
          Length = 575

 Score =  224 bits (572), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 120/195 (61%), Positives = 146/195 (74%), Gaps = 4/195 (2%)

Query: 1   MSNAALHTIARNRPNFTCFRLCIIEPQAPDYLTLQPLDSGFGAIVEHCKGLQRLSLSGLL 60
           M+NAAL T+A+N PNF  FRLCI+EP  PD++T QPLD GFGAIV+ CK L+RLSLSGLL
Sbjct: 379 MTNAALVTVAKNCPNFIRFRLCILEPNKPDHVTSQPLDEGFGAIVKACKSLRRLSLSGLL 438

Query: 61  TDRVFEYIGTYGKKLEMLSLAFAGDSDLGLHHVLSGCDNLKKLEIRDCPFGDKALLANAA 120
           TD+VF YIG Y  +LEMLS+AFAGD+D G+ +VL+GC  +KKLEIRD PFGD ALLA+ +
Sbjct: 439 TDQVFLYIGMYANQLEMLSIAFAGDTDKGMLYVLNGCKKMKKLEIRDSPFGDTALLADVS 498

Query: 121 KLETMRSLWMSSCSVSYGACKLLGLKMPKLNVEVIDE----RGPPDSRPDSCPVEKLYIY 176
           K ETMRSLWMSSC V+   CK L  K P LNVE+I+E    R   +       V+KLY+Y
Sbjct: 499 KYETMRSLWMSSCEVTLSGCKRLAEKAPWLNVEIINENDNNRMEENGHEGRQKVDKLYLY 558

Query: 177 RTIAGPRMDMPGFVY 191
           RT+ G RMD P FV+
Sbjct: 559 RTVVGTRMDAPPFVW 573


>AT5G49980.1 | Symbols: AFB5 | auxin F-box protein 5 |
           chr5:20334420-20336531 REVERSE LENGTH=619
          Length = 619

 Score =  198 bits (503), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 101/190 (53%), Positives = 130/190 (68%), Gaps = 3/190 (1%)

Query: 1   MSNAALHTIARNRPNFTCFRLCIIEPQAPDYLTLQPLDSGFGAIVEHCKGLQRLSLSGLL 60
           M+NAA+  ++ N P  T FRLCI+    PD++T +P+D GFGAIV++CK L RL++SGLL
Sbjct: 430 MTNAAVIAMSENCPELTVFRLCIMGRHRPDHVTGKPMDEGFGAIVKNCKKLTRLAVSGLL 489

Query: 61  TDRVFEYIGTYGKKLEMLSLAFAGDSDLGLHHVLSGCDNLKKLEIRDCPFGDKALLANAA 120
           TD+ F Y+G YGK +  LS+AFAGDSD+ L HVL GC  L+KLEIRD PFGD AL +   
Sbjct: 490 TDQAFRYMGEYGKLVRTLSVAFAGDSDMALRHVLEGCPRLQKLEIRDSPFGDVALRSGMH 549

Query: 121 KLETMRSLWMSSCSVSYGACKLLGLKMPKLNVEVIDERGPPDSRPDSCPVEKLYIYRTIA 180
           +   MR +WMS+CS+S G CK +   MP L VEVI      D+R     VE LY+YR++ 
Sbjct: 550 RYYNMRFVWMSACSLSKGCCKDIARAMPNLVVEVIGSDDDDDNRDY---VETLYMYRSLD 606

Query: 181 GPRMDMPGFV 190
           GPR D P FV
Sbjct: 607 GPRNDAPKFV 616


>AT4G24390.1 | Symbols:  | RNI-like superfamily protein |
           chr4:12613909-12615966 REVERSE LENGTH=623
          Length = 623

 Score =  187 bits (474), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 94/193 (48%), Positives = 125/193 (64%), Gaps = 5/193 (2%)

Query: 1   MSNAALHTIARNRPNFTCFRLCIIEPQAPDYLTLQPLDSGFGAIVEHCKGLQRLSLSGLL 60
           M+N A+  ++ N P  T FRLCI+    PD++T +P+D GFGAIV++CK L RL++SGLL
Sbjct: 430 MTNGAVTAMSENCPQLTVFRLCIMGRHRPDHVTGKPMDDGFGAIVKNCKKLTRLAVSGLL 489

Query: 61  TDRVFEYIGTYGKKLEMLSLAFAGDSDLGLHHVLSGCDNLKKLEIRDCPFGDKALLANAA 120
           TD  F YIG YGK +  LS+AFAG+SD  L +VL GC  L+KLEIRD PFGD  L +   
Sbjct: 490 TDEAFSYIGEYGKLIRTLSVAFAGNSDKALRYVLEGCPKLQKLEIRDSPFGDVGLRSGMH 549

Query: 121 KLETMRSLWMSSCSVSYGACKLLGLKMPKLNVEVIDERGPPDSRPDSCP---VEKLYIYR 177
           +   MR +W+SSC +S G C+ +   +P + VEV    G  D   D+     VE LY+YR
Sbjct: 550 RYSNMRFVWLSSCLISRGGCRGVSHALPNVVVEVFGADG--DDDEDTVTGDYVETLYLYR 607

Query: 178 TIAGPRMDMPGFV 190
           ++ GPR D P FV
Sbjct: 608 SLDGPRKDAPKFV 620


>AT4G24390.2 | Symbols:  | RNI-like superfamily protein |
           chr4:12613909-12615966 REVERSE LENGTH=623
          Length = 623

 Score =  187 bits (474), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 94/193 (48%), Positives = 125/193 (64%), Gaps = 5/193 (2%)

Query: 1   MSNAALHTIARNRPNFTCFRLCIIEPQAPDYLTLQPLDSGFGAIVEHCKGLQRLSLSGLL 60
           M+N A+  ++ N P  T FRLCI+    PD++T +P+D GFGAIV++CK L RL++SGLL
Sbjct: 430 MTNGAVTAMSENCPQLTVFRLCIMGRHRPDHVTGKPMDDGFGAIVKNCKKLTRLAVSGLL 489

Query: 61  TDRVFEYIGTYGKKLEMLSLAFAGDSDLGLHHVLSGCDNLKKLEIRDCPFGDKALLANAA 120
           TD  F YIG YGK +  LS+AFAG+SD  L +VL GC  L+KLEIRD PFGD  L +   
Sbjct: 490 TDEAFSYIGEYGKLIRTLSVAFAGNSDKALRYVLEGCPKLQKLEIRDSPFGDVGLRSGMH 549

Query: 121 KLETMRSLWMSSCSVSYGACKLLGLKMPKLNVEVIDERGPPDSRPDSCP---VEKLYIYR 177
           +   MR +W+SSC +S G C+ +   +P + VEV    G  D   D+     VE LY+YR
Sbjct: 550 RYSNMRFVWLSSCLISRGGCRGVSHALPNVVVEVFGADG--DDDEDTVTGDYVETLYLYR 607

Query: 178 TIAGPRMDMPGFV 190
           ++ GPR D P FV
Sbjct: 608 SLDGPRKDAPKFV 620


>AT2G39940.1 | Symbols: COI1 | RNI-like superfamily protein |
           chr2:16672848-16675486 REVERSE LENGTH=592
          Length = 592

 Score =  101 bits (251), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 63/198 (31%), Positives = 99/198 (50%), Gaps = 10/198 (5%)

Query: 1   MSNAALHTIARNRPNFTCFRLCIIEPQAPDYLTLQPLDSGFGAIVEHCKGLQRLSL---S 57
           ++N +L +I     N   FRL +++ +  + +T  PLD+G  +++  CK L+R +     
Sbjct: 390 ITNESLESIGTYLKNLCDFRLVLLDRE--ERITDLPLDNGVRSLLIGCKKLRRFAFYLRQ 447

Query: 58  GLLTDRVFEYIGTYGKKLEMLSLAFAGDSDLGLHHVLSGCDNLKKLEIRDCPFGDKALLA 117
           G LTD    YIG Y   +  + L + G+SD GL     GC NL+KLE+R C F ++A+ A
Sbjct: 448 GGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAA 507

Query: 118 NAAKLETMRSLWMSSCSVSYGACKLLGLKMPKLNVEVIDERGPPDSRPDSCPVE-----K 172
              KL ++R LW+     S     L+ +  P  N+E+I  R  P+        E      
Sbjct: 508 AVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEVNQQGEIREMEHPAH 567

Query: 173 LYIYRTIAGPRMDMPGFV 190
           +  Y ++AG R D P  V
Sbjct: 568 ILAYYSLAGQRTDCPTTV 585