Miyakogusa Predicted Gene
- Lj1g3v4764260.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v4764260.1 Non Chatacterized Hit- tr|I1FE49|I1FE49_AMPQE
Uncharacterized protein OS=Amphimedon queenslandica
GN,38.79,0.00000000000001,RNA recognition motif,RNA recognition motif
domain; RRM_1,RNA recognition motif domain; FAMILY NOT N,CUFF.33249.1
(440 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G03110.1 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding protein-... 518 e-147
AT1G03457.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 482 e-136
AT1G03457.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 474 e-134
AT4G03110.2 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding protein-... 469 e-132
AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |... 171 8e-43
AT4G16280.4 | Symbols: | RNA binding;abscisic acid binding | ch... 171 1e-42
AT4G16280.3 | Symbols: FCA | RNA binding;abscisic acid binding |... 171 1e-42
AT2G47310.1 | Symbols: | flowering time control protein-related... 108 8e-24
AT4G00830.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 74 2e-13
AT4G00830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 74 2e-13
AT4G00830.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 74 3e-13
AT4G00830.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 70 4e-12
AT5G51300.3 | Symbols: | splicing factor-related | chr5:2084988... 68 1e-11
AT5G51300.2 | Symbols: | splicing factor-related | chr5:2084988... 68 1e-11
AT5G51300.1 | Symbols: | splicing factor-related | chr5:2084988... 68 1e-11
AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 68 2e-11
AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 67 2e-11
AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 67 3e-11
AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 67 3e-11
AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich RNA-... 67 3e-11
AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 | chr1:8... 65 7e-11
AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 65 7e-11
AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |... 65 1e-10
AT1G01080.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 65 1e-10
AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 64 2e-10
AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 64 2e-10
AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 64 2e-10
AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45... 64 2e-10
AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protei... 62 6e-10
AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2... 62 7e-10
AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2... 62 7e-10
AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 61 1e-09
AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 61 1e-09
AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 3... 61 1e-09
AT1G01080.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 61 2e-09
AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 61 2e-09
AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 61 2e-09
AT4G14300.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 3e-09
AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 | chr1:1... 60 3e-09
AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |... 60 3e-09
AT3G26420.1 | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motifs... 60 4e-09
AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding pro... 60 4e-09
AT3G19130.1 | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47... 60 4e-09
AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 4e-09
AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs... 59 5e-09
AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 8e-09
AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 59 8e-09
AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 59 8e-09
AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 9e-09
AT4G26650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 9e-09
AT3G11400.2 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation... 58 1e-08
AT3G11400.1 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation... 58 1e-08
AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding pr... 58 1e-08
AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 58 1e-08
AT2G43410.4 | Symbols: FPA | RNA binding | chr2:18026397-1803098... 58 1e-08
AT2G43410.3 | Symbols: FPA | RNA binding | chr2:18026397-1803098... 58 1e-08
AT2G43410.2 | Symbols: FPA | RNA binding | chr2:18026397-1803098... 58 1e-08
AT4G36960.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 58 1e-08
AT4G36960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 58 1e-08
AT2G43410.1 | Symbols: FPA | RNA binding | chr2:18026397-1803098... 58 2e-08
AT5G54580.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 2e-08
AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RN... 57 2e-08
AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 57 3e-08
AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29... 56 4e-08
AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29... 56 4e-08
AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29... 56 4e-08
AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29... 56 4e-08
AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 4e-08
AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motif... 56 4e-08
AT5G47320.1 | Symbols: RPS19 | ribosomal protein S19 | chr5:1920... 56 5e-08
AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 56 6e-08
AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 7e-08
AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 8e-08
AT1G58470.1 | Symbols: ATRBP1, RBP1 | RNA-binding protein 1 | ch... 55 9e-08
AT5G06000.1 | Symbols: EIF3G2, ATEIF3G2 | eukaryotic translation... 55 9e-08
AT5G04600.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 9e-08
AT2G21660.2 | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, an... 55 1e-07
AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold, circa... 55 1e-07
AT1G18630.1 | Symbols: GR-RBP6 | glycine-rich RNA-binding protei... 55 1e-07
AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 1e-07
AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protei... 55 1e-07
AT1G54080.1 | Symbols: UBP1A | oligouridylate-binding protein 1A... 54 2e-07
AT3G52150.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 2e-07
AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 2e-07
AT1G47500.1 | Symbols: ATRBP47C', RBP47C' | RNA-binding protein ... 54 3e-07
AT5G06210.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) famil... 54 3e-07
AT1G51510.1 | Symbols: Y14 | RNA-binding (RRM/RBD/RNP motifs) fa... 53 4e-07
AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 4e-07
AT4G13860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 4e-07
AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 | chr3:5... 52 9e-07
AT4G16280.1 | Symbols: FCA | RNA binding;abscisic acid binding |... 52 9e-07
AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 | chr1:1... 51 1e-06
AT2G44710.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 1e-06
AT3G52660.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 1e-06
AT3G52660.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 1e-06
AT3G46020.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 1e-06
AT2G37510.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 2e-06
AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 3e-06
AT5G09880.1 | Symbols: | Splicing factor, CC1-like | chr5:30816... 50 3e-06
AT2G21690.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 3e-06
AT3G04500.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 7e-06
AT3G47120.1 | Symbols: | RNA recognition motif (RRM)-containing... 49 7e-06
>AT4G03110.1 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding
protein-defense related 1 | chr4:1376612-1379275 REVERSE
LENGTH=441
Length = 441
Score = 518 bits (1335), Expect = e-147, Method: Compositional matrix adjust.
Identities = 268/424 (63%), Positives = 309/424 (72%), Gaps = 16/424 (3%)
Query: 24 VKLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVN 83
VKLFVGQ+PKHM+E +LLT+F+EFA+VDEVNIIKDK TRASRGCCF++CPSR+EADK VN
Sbjct: 18 VKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLVN 77
Query: 84 ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEVEVSALFSNYGTIKDLQI 143
ACHNKKTLPGA+S LQVKYADGELERLEHKLF+GMLPKNVSE EV +LFS YGTIKDLQI
Sbjct: 78 ACHNKKTLPGANSLLQVKYADGELERLEHKLFVGMLPKNVSEAEVQSLFSKYGTIKDLQI 137
Query: 144 LRGSQQTSKGCAFLKYETKDQALAALEAINGKHKMEGSSVPLVVKWADTXXXXXXXXXXX 203
LRG+QQTSKGCAFLKYETK+QA++A+E+INGKHKMEGS+VPLVVKWADT
Sbjct: 138 LRGAQQTSKGCAFLKYETKEQAVSAMESINGKHKMEGSTVPLVVKWADTERERHTRRLQK 197
Query: 204 XXXXXXNVPHADSQHPSLFGAMPMGYVPPYNGYGY-QAPGSYGLMPYRMPPMQNQPGFHN 262
+ + D +PSLFGA+PMGYVPPYNGYGY Q PG+YG Y +PP+QNQ F N
Sbjct: 198 AQSHIARLGNGDPTNPSLFGALPMGYVPPYNGYGYHQPPGTYG---YMLPPIQNQAAFSN 254
Query: 263 MMPHMNHGN-----ALRPD-LGPSMNPRNYHVPPASYV-SSYPAVPGLQHPMAYHAXXXX 315
M+ N GN PD + P + RN+ +PP +Y+ S YPA+ G P AY
Sbjct: 255 MIAQPNQGNNNALQGTSPDSVPPRLARRNFPMPPGNYMGSGYPAMRGHPFPFAY-----P 309
Query: 316 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQVEGPPGANLFIYHIPQEFGDQDLANAF 375
Q EGP GANLFIY+IP+EFGDQ+LA AF
Sbjct: 310 RGIVSPRPLSSSPGSISPGMSTPLGIGLSSVVQTEGPEGANLFIYNIPREFGDQELAAAF 369
Query: 376 QPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMMNGYQLGGKKLKVQHKRDNK 435
Q FG V+SAKVFVDKATGVSKCFGFVSYDS AAQ+AI MMNG LGGKKLKVQ KRD+
Sbjct: 370 QSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAIDMMNGRHLGGKKLKVQLKRDSN 429
Query: 436 PGKP 439
G+P
Sbjct: 430 NGQP 433
>AT1G03457.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:861109-864019 REVERSE LENGTH=429
Length = 429
Score = 482 bits (1241), Expect = e-136, Method: Compositional matrix adjust.
Identities = 248/421 (58%), Positives = 297/421 (70%), Gaps = 33/421 (7%)
Query: 24 VKLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVN 83
VKLFVGQVPKHMTE +LLT+F+EF++V+EVNIIK+K TRA RGCCF+ CP+R++ADK +N
Sbjct: 12 VKLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKVIN 71
Query: 84 ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEVEVSALFSNYGTIKDLQI 143
+ HNKKTLPGASSPLQVKYADGELERLEHKLF+GMLPKNVSE EV +LFS YGTIKDLQI
Sbjct: 72 SFHNKKTLPGASSPLQVKYADGELERLEHKLFVGMLPKNVSETEVQSLFSEYGTIKDLQI 131
Query: 144 LRGSQQTSKGCAFLKYETKDQALAALEAINGKHKMEGSSVPLVVKWADTXXXXXXXXXXX 203
LRGS QTSKGC FLKYE+K+QA+AA+EA+NG+H MEG++VPL+VKWADT
Sbjct: 132 LRGSLQTSKGCLFLKYESKEQAVAAMEALNGRHIMEGANVPLIVKWADT---EKERQARR 188
Query: 204 XXXXXXNVPHADSQHPSLFGAMPMGYVPPYNGYGYQAPGSYGLMPYRMPPMQNQPGFHNM 263
+V D Q+PS+FGA+PM YVPPYNGYGY PG+YG Y +PP+Q Q FHN+
Sbjct: 189 LLKVQSHVSRLDPQNPSMFGALPMSYVPPYNGYGYHVPGTYG---YMLPPIQTQHAFHNV 245
Query: 264 M-PHMNHGNALR---------PDLGPSMNPRNYHVPPASYVSSYPAVPGLQHPMAYHAXX 313
+ P+ +G AL+ P L P RN+ +Y GLQ+PMA+
Sbjct: 246 ISPNQGNGRALQGTALTESVPPRLAPR---RNFPTALGNY-----GYHGLQYPMAF---- 293
Query: 314 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQVEGPPGANLFIYHIPQEFGDQDLAN 373
Q EGP GANLFIY+IP+EF DQ+LA
Sbjct: 294 -----PRGMIPPRLPLTTVSPGISNNGTSIPSSLQTEGPAGANLFIYNIPREFEDQELAA 348
Query: 374 AFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMMNGYQLGGKKLKVQHKRD 433
FQPFG+V+SAKVFVDKATG+SKCFGF+SYDS AAQ+AI+ MNG QL GKKLKVQ KRD
Sbjct: 349 TFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTMNGCQLSGKKLKVQLKRD 408
Query: 434 N 434
N
Sbjct: 409 N 409
>AT1G03457.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:861109-864019 REVERSE LENGTH=438
Length = 438
Score = 474 bits (1219), Expect = e-134, Method: Compositional matrix adjust.
Identities = 248/430 (57%), Positives = 297/430 (69%), Gaps = 42/430 (9%)
Query: 24 VKLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVN 83
VKLFVGQVPKHMTE +LLT+F+EF++V+EVNIIK+K TRA RGCCF+ CP+R++ADK +N
Sbjct: 12 VKLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKVIN 71
Query: 84 ACHNKKTLPGASSPLQVKYADGELERL---------EHKLFIGMLPKNVSEVEVSALFSN 134
+ HNKKTLPGASSPLQVKYADGELERL EHKLF+GMLPKNVSE EV +LFS
Sbjct: 72 SFHNKKTLPGASSPLQVKYADGELERLDVLDCSCNPEHKLFVGMLPKNVSETEVQSLFSE 131
Query: 135 YGTIKDLQILRGSQQTSKGCAFLKYETKDQALAALEAINGKHKMEGSSVPLVVKWADTXX 194
YGTIKDLQILRGS QTSKGC FLKYE+K+QA+AA+EA+NG+H MEG++VPL+VKWADT
Sbjct: 132 YGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEALNGRHIMEGANVPLIVKWADT-- 189
Query: 195 XXXXXXXXXXXXXXXNVPHADSQHPSLFGAMPMGYVPPYNGYGYQAPGSYGLMPYRMPPM 254
+V D Q+PS+FGA+PM YVPPYNGYGY PG+YG Y +PP+
Sbjct: 190 -EKERQARRLLKVQSHVSRLDPQNPSMFGALPMSYVPPYNGYGYHVPGTYG---YMLPPI 245
Query: 255 QNQPGFHNMM-PHMNHGNALR---------PDLGPSMNPRNYHVPPASYVSSYPAVPGLQ 304
Q Q FHN++ P+ +G AL+ P L P RN+ +Y GLQ
Sbjct: 246 QTQHAFHNVISPNQGNGRALQGTALTESVPPRLAPR---RNFPTALGNY-----GYHGLQ 297
Query: 305 HPMAYHAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQVEGPPGANLFIYHIPQ 364
+PMA+ Q EGP GANLFIY+IP+
Sbjct: 298 YPMAF---------PRGMIPPRLPLTTVSPGISNNGTSIPSSLQTEGPAGANLFIYNIPR 348
Query: 365 EFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMMNGYQLGGK 424
EF DQ+LA FQPFG+V+SAKVFVDKATG+SKCFGF+SYDS AAQ+AI+ MNG QL GK
Sbjct: 349 EFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTMNGCQLSGK 408
Query: 425 KLKVQHKRDN 434
KLKVQ KRDN
Sbjct: 409 KLKVQLKRDN 418
>AT4G03110.2 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding
protein-defense related 1 | chr4:1376710-1379275 REVERSE
LENGTH=439
Length = 439
Score = 469 bits (1206), Expect = e-132, Method: Compositional matrix adjust.
Identities = 242/388 (62%), Positives = 283/388 (72%), Gaps = 15/388 (3%)
Query: 24 VKLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVN 83
VKLFVGQ+PKHM+E +LLT+F+EFA+VDEVNIIKDK TRASRGCCF++CPSR+EADK VN
Sbjct: 18 VKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLVN 77
Query: 84 ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEVEVSALFSNYGTIKDLQI 143
ACHNKKTLPGA+S LQVKYADGELERLEHKLF+GMLPKNVSE EV +LFS YGTIKDLQI
Sbjct: 78 ACHNKKTLPGANSLLQVKYADGELERLEHKLFVGMLPKNVSEAEVQSLFSKYGTIKDLQI 137
Query: 144 LRGSQQTSKGCAFLKYETKDQALAALEAINGKHKMEGSSVPLVVKWADTXXXXXXXXXXX 203
LRG+QQTSKGCAFLKYETK+QA++A+E+INGKHKMEGS+VPLVVKWADT
Sbjct: 138 LRGAQQTSKGCAFLKYETKEQAVSAMESINGKHKMEGSTVPLVVKWADTERERHTRRLQK 197
Query: 204 XXXXXXNVPHADSQHPSLFGAMPMGYVPPYNGYGYQAPGSYGLMPYRMPPMQNQPGFHNM 263
+ + D +PSLFGA+PMGYVPPYNGYGY PG+YG Y +PP+QNQ F NM
Sbjct: 198 AQSHIARLGNGDPTNPSLFGALPMGYVPPYNGYGYHPPGTYG---YMLPPIQNQAAFSNM 254
Query: 264 MPHMNHG--NALR---PD-LGPSMNPRNYHVPPASYV-SSYPAVPGLQHPMAYHAXXXXX 316
+ N G NAL+ PD + P + RN+ +PP +Y+ S YPA+ G P AY
Sbjct: 255 IAQPNQGNNNALQGTSPDSVPPRLARRNFPMPPGNYMGSGYPAMRGHPFPFAY-----PR 309
Query: 317 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQVEGPPGANLFIYHIPQEFGDQDLANAFQ 376
Q EGP GANLFIY+IP+EFGDQ+LA AFQ
Sbjct: 310 GIVSPRPLSSSPGSISPGMSTPLGIGLSSVVQTEGPEGANLFIYNIPREFGDQELAAAFQ 369
Query: 377 PFGRVISAKVFVDKATGVSKCFGFVSYD 404
FG V+SAKVFVDKATGVSKCFG +S+D
Sbjct: 370 SFGIVLSAKVFVDKATGVSKCFGKLSFD 397
>AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |
chr4:9207164-9214412 REVERSE LENGTH=747
Length = 747
Score = 171 bits (433), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 78/171 (45%), Positives = 117/171 (68%), Gaps = 3/171 (1%)
Query: 24 VKLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVN 83
VKLFVG VP+ TE+E+ F++ V EV +IKDK T +GCCFV + +AD+A+
Sbjct: 120 VKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIR 179
Query: 84 ACHNKKTLPGASSPLQVKYADGELER---LEHKLFIGMLPKNVSEVEVSALFSNYGTIKD 140
A HN+ TLPG + P+QV+YADGE ER LE KLF+G L K +E EV +F +G ++D
Sbjct: 180 ALHNQITLPGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVED 239
Query: 141 LQILRGSQQTSKGCAFLKYETKDQALAALEAINGKHKMEGSSVPLVVKWAD 191
+ ++R + S+GC F+KY +K+ A+AA++ +NG + M G + PL+V++A+
Sbjct: 240 VYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAE 290
>AT4G16280.4 | Symbols: | RNA binding;abscisic acid binding |
chr4:9207164-9214187 REVERSE LENGTH=672
Length = 672
Score = 171 bits (433), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 78/171 (45%), Positives = 117/171 (68%), Gaps = 3/171 (1%)
Query: 24 VKLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVN 83
VKLFVG VP+ TE+E+ F++ V EV +IKDK T +GCCFV + +AD+A+
Sbjct: 45 VKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIR 104
Query: 84 ACHNKKTLPGASSPLQVKYADGELER---LEHKLFIGMLPKNVSEVEVSALFSNYGTIKD 140
A HN+ TLPG + P+QV+YADGE ER LE KLF+G L K +E EV +F +G ++D
Sbjct: 105 ALHNQITLPGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVED 164
Query: 141 LQILRGSQQTSKGCAFLKYETKDQALAALEAINGKHKMEGSSVPLVVKWAD 191
+ ++R + S+GC F+KY +K+ A+AA++ +NG + M G + PL+V++A+
Sbjct: 165 VYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAE 215
>AT4G16280.3 | Symbols: FCA | RNA binding;abscisic acid binding |
chr4:9208564-9214412 REVERSE LENGTH=533
Length = 533
Score = 171 bits (432), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 78/171 (45%), Positives = 117/171 (68%), Gaps = 3/171 (1%)
Query: 24 VKLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVN 83
VKLFVG VP+ TE+E+ F++ V EV +IKDK T +GCCFV + +AD+A+
Sbjct: 120 VKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIR 179
Query: 84 ACHNKKTLPGASSPLQVKYADGELER---LEHKLFIGMLPKNVSEVEVSALFSNYGTIKD 140
A HN+ TLPG + P+QV+YADGE ER LE KLF+G L K +E EV +F +G ++D
Sbjct: 180 ALHNQITLPGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVED 239
Query: 141 LQILRGSQQTSKGCAFLKYETKDQALAALEAINGKHKMEGSSVPLVVKWAD 191
+ ++R + S+GC F+KY +K+ A+AA++ +NG + M G + PL+V++A+
Sbjct: 240 VYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAE 290
>AT2G47310.1 | Symbols: | flowering time control protein-related /
FCA gamma-related | chr2:19423791-19426846 FORWARD
LENGTH=512
Length = 512
Score = 108 bits (270), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 101/177 (57%), Gaps = 9/177 (5%)
Query: 24 VKLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVN 83
KL+V + K TE ++ +F+++ V E+ + KDK T CF+ +E + A+
Sbjct: 110 AKLYVAPISKTATEYDIRQVFEKYGNVTEIILPKDKMTGERAAYCFIKYKKVEEGNAAIA 169
Query: 84 ACHNKKTLPGASSPLQVKYADGELERL---------EHKLFIGMLPKNVSEVEVSALFSN 134
A + T PG P++V++A+ E ER+ KL++ L K +++EV+ +FS
Sbjct: 170 ALTEQFTFPGEMLPVKVRFAEAERERIGFAPVQLPDNPKLYVRCLNKQTTKMEVNEVFSR 229
Query: 135 YGTIKDLQILRGSQQTSKGCAFLKYETKDQALAALEAINGKHKMEGSSVPLVVKWAD 191
YG I+D+ + + +G AF+++ K+ ALAA++A+NG + GS PL+V++AD
Sbjct: 230 YGIIEDIYMALDDMKICRGYAFVQFSCKEMALAAIKALNGLFTIRGSDQPLIVRFAD 286
>AT4G00830.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 89/171 (52%), Gaps = 14/171 (8%)
Query: 25 KLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNA 84
++F+G +P+ + E++L + +E + EV ++KD+ + S+G FV ++D A KA+
Sbjct: 117 EVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEE 176
Query: 85 CHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEVEVSALFSNYG-TIKDLQI 143
H+K+ + K L +++LFIG +PKN +E E + + G ++++++
Sbjct: 177 LHSKE--------FKGKTIRCSLSETKNRLFIGNIPKNWTEDEFRKVIEDVGPGVENIEL 228
Query: 144 LRGSQQTSKGCAF---LKYETKDQALAALEAINGKHKMEGSSVPLVVKWAD 191
++ T++ F L Y + + I+ K+EG++ V WAD
Sbjct: 229 IKDPTNTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLEGNAP--TVTWAD 277
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 45/76 (59%)
Query: 352 PPGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQS 411
P G+ +FI +P++ G++DL + + G + ++ D+ +G SK + FV++ + + AQ
Sbjct: 113 PHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQK 172
Query: 412 AISMMNGYQLGGKKLK 427
AI ++ + GK ++
Sbjct: 173 AIEELHSKEFKGKTIR 188
>AT4G00830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 89/171 (52%), Gaps = 14/171 (8%)
Query: 25 KLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNA 84
++F+G +P+ + E++L + +E + EV ++KD+ + S+G FV ++D A KA+
Sbjct: 117 EVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEE 176
Query: 85 CHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEVEVSALFSNYG-TIKDLQI 143
H+K+ + K L +++LFIG +PKN +E E + + G ++++++
Sbjct: 177 LHSKE--------FKGKTIRCSLSETKNRLFIGNIPKNWTEDEFRKVIEDVGPGVENIEL 228
Query: 144 LRGSQQTSKGCAF---LKYETKDQALAALEAINGKHKMEGSSVPLVVKWAD 191
++ T++ F L Y + + I+ K+EG++ V WAD
Sbjct: 229 IKDPTNTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLEGNAP--TVTWAD 277
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 45/76 (59%)
Query: 352 PPGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQS 411
P G+ +FI +P++ G++DL + + G + ++ D+ +G SK + FV++ + + AQ
Sbjct: 113 PHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQK 172
Query: 412 AISMMNGYQLGGKKLK 427
AI ++ + GK ++
Sbjct: 173 AIEELHSKEFKGKTIR 188
>AT4G00830.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 90/171 (52%), Gaps = 14/171 (8%)
Query: 25 KLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNA 84
++F+G +P+ + E++L + +E + EV ++KD+ + S+G FV ++D A KA+
Sbjct: 117 EVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEE 176
Query: 85 CHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEVEVSALFSNYG-TIKDLQI 143
H+K+ +++ + L ++LFIG +PKN +E E + + G ++++++
Sbjct: 177 LHSKEFKASSTANCSLS--------LSNRLFIGNIPKNWTEDEFRKVIEDVGPGVENIEL 228
Query: 144 LRGSQQTSKGCAF---LKYETKDQALAALEAINGKHKMEGSSVPLVVKWAD 191
++ T++ F L Y + + I+ K+EG++ V WAD
Sbjct: 229 IKDPTNTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLEGNAP--TVTWAD 277
>AT4G00830.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352842-354965 FORWARD LENGTH=467
Length = 467
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 25 KLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNA 84
++F+G +P+ + E++L + +E + EV ++KD+ + S+G FV ++D A KA+
Sbjct: 97 EVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEE 156
Query: 85 CHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEVEVSALFSNYGTIKDLQIL 144
H+K+ + K L +++LFIG +PKN +E E + + G
Sbjct: 157 LHSKE--------FKGKTIRCSLSETKNRLFIGNIPKNWTEDEFRKVIEDVGPGDPTNTT 208
Query: 145 RGSQQTSKGCAF-LKYETKDQALAALEAINGKHKMEGSSVPLVVKWAD 191
R ++G AF L Y + + I+ K+EG++ V WAD
Sbjct: 209 R-----NRGFAFVLYYNNACADYSRQKMIDSNFKLEGNAP--TVTWAD 249
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 45/76 (59%)
Query: 352 PPGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQS 411
P G+ +FI +P++ G++DL + + G + ++ D+ +G SK + FV++ + + AQ
Sbjct: 93 PHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQK 152
Query: 412 AISMMNGYQLGGKKLK 427
AI ++ + GK ++
Sbjct: 153 AIEELHSKEFKGKTIR 168
>AT5G51300.3 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%)
Query: 355 ANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAIS 414
NL+I +P D L N F FG ++ AKV D+ TG+SK +GFV Y + A +A+
Sbjct: 480 TNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQ 539
Query: 415 MMNGYQLGGKKLKVQ 429
MNGY+ G+ L V+
Sbjct: 540 AMNGYRFEGRTLAVR 554
>AT5G51300.2 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%)
Query: 355 ANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAIS 414
NL+I +P D L N F FG ++ AKV D+ TG+SK +GFV Y + A +A+
Sbjct: 480 TNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQ 539
Query: 415 MMNGYQLGGKKLKVQ 429
MNGY+ G+ L V+
Sbjct: 540 AMNGYRFEGRTLAVR 554
>AT5G51300.1 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%)
Query: 355 ANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAIS 414
NL+I +P D L N F FG ++ AKV D+ TG+SK +GFV Y + A +A+
Sbjct: 480 TNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQ 539
Query: 415 MMNGYQLGGKKLKVQ 429
MNGY+ G+ L V+
Sbjct: 540 AMNGYRFEGRTLAVR 554
>AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495102 FORWARD LENGTH=495
Length = 495
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 77/171 (45%), Gaps = 21/171 (12%)
Query: 25 KLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNA 84
KLF+G + E+ L F F V E I+KD+ T +RG FV+ A+ +
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 85 CHN--------KKTLP-------GASSPLQVKYADGELERLEHKLFIGMLPKNVSEVEVS 129
HN KK +P S+ ++ + G R K+F+G LP +V+E +
Sbjct: 67 KHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRT-RKIFVGGLPSSVTESDFK 125
Query: 130 ALFSNYGTIKDLQILRG-SQQTSKGCAFLKYETKDQA----LAALEAINGK 175
F +GT D+ ++ + Q +G F+ Y++++ L +NGK
Sbjct: 126 TYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGK 176
>AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495052 FORWARD LENGTH=494
Length = 494
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 77/171 (45%), Gaps = 21/171 (12%)
Query: 25 KLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNA 84
KLF+G + E+ L F F V E I+KD+ T +RG FV+ A+ +
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 85 CHN--------KKTLP-------GASSPLQVKYADGELERLEHKLFIGMLPKNVSEVEVS 129
HN KK +P S+ ++ + G R K+F+G LP +V+E +
Sbjct: 67 KHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRT-RKIFVGGLPSSVTESDFK 125
Query: 130 ALFSNYGTIKDLQILRG-SQQTSKGCAFLKYETKDQA----LAALEAINGK 175
F +GT D+ ++ + Q +G F+ Y++++ L +NGK
Sbjct: 126 TYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGK 176
>AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:16225483-16227423 FORWARD LENGTH=423
Length = 423
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 81/177 (45%), Gaps = 22/177 (12%)
Query: 25 KLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNA 84
K+FVG + + T E L F ++ + + I+KD+ T RG FV DK +
Sbjct: 43 KIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQD 102
Query: 85 CH--------NKKTLP-GASSPLQVKYADGELERLEHKLFIGMLPKNVSEVEVSALFSNY 135
H K+T+P G+ S K K+F+G +P +V + E F +
Sbjct: 103 NHIIIGKQVEIKRTIPRGSMSSNDFKTK---------KIFVGGIPSSVDDDEFKEFFMQF 153
Query: 136 GTIKDLQILRG-SQQTSKGCAFLKYETKDQALAALEAINGKHKMEGSSVPLVVKWAD 191
G +K+ QI+R S S+G F+ YE++D L N ++E S + +K A+
Sbjct: 154 GELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGN---RIELSGTQVEIKKAE 207
>AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=153
Length = 153
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 357 LFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMM 416
LFI + D L +AF FG V+ AKV VD+ TG S+ FGFV+++ AA +AIS M
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 417 NGYQLGGKKLKVQHKRDNKPGKP 439
+G +L G+ ++V D +P P
Sbjct: 97 DGKELNGRHIRVNPAND-RPSAP 118
>AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich
RNA-binding protein 2 | chr4:8021314-8022065 FORWARD
LENGTH=158
Length = 158
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 357 LFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMM 416
LFI + D L +AF FG V+ AKV VD+ TG S+ FGFV+++ AA +AIS M
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 417 NGYQLGGKKLKVQHKRDNKPGKP 439
+G +L G+ ++V D +P P
Sbjct: 97 DGKELNGRHIRVNPAND-RPSAP 118
>AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 |
chr1:8055599-8058799 FORWARD LENGTH=660
Length = 660
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 352 PPGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQS 411
P N+++ ++P+E G+ +L F FG VIS+ V + +G S+CFGFV+++ EAA S
Sbjct: 226 PRFTNVYVKNLPKEIGEDELRKTFGKFG-VISSAVVMRDQSGNSRCFGFVNFECTEAAAS 284
Query: 412 AISMMNGYQLGGKKLKV 428
A+ MNG LG L V
Sbjct: 285 AVEKMNGISLGDDVLYV 301
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 52/91 (57%), Gaps = 4/91 (4%)
Query: 348 QVEGPPGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPE 407
+ E GANL++ ++ D+ L F +G V S+KV ++ G+S+ FGFV+Y +PE
Sbjct: 325 RFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLN-PQGMSRGFGFVAYSNPE 383
Query: 408 AAQSAISMMNGYQLGGKKLKV---QHKRDNK 435
A A+S MNG +G K L + Q K D +
Sbjct: 384 EALRALSEMNGKMIGRKPLYIALAQRKEDRR 414
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 74/168 (44%), Gaps = 17/168 (10%)
Query: 24 VKLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVN 83
++V +PK + EDEL F +F ++ +++D++ SR FV + A AV
Sbjct: 229 TNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGN-SRCFGFVNFECTEAAASAVE 287
Query: 84 ACH------------NKKTLPGASSPLQVKYADGELERLEH----KLFIGMLPKNVSEVE 127
+ + L+ K+ + R E L++ L +V + +
Sbjct: 288 KMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEK 347
Query: 128 VSALFSNYGTIKDLQILRGSQQTSKGCAFLKYETKDQALAALEAINGK 175
+ +FS YG + +++ Q S+G F+ Y ++AL AL +NGK
Sbjct: 348 LKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGK 395
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 356 NLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISM 415
N+FI ++ ++ L F FG ++S KV +D TG SK +GFV ++ E+AQ+AI
Sbjct: 137 NIFIKNLDASIDNKALFETFSSFGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQAAIDK 195
Query: 416 MNGYQLGGKKLKVQH 430
+NG + K++ V H
Sbjct: 196 LNGMLMNDKQVFVGH 210
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 77/152 (50%), Gaps = 7/152 (4%)
Query: 26 LFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNAC 85
L+ G + +TE L +FK A V V + +D+ R S G ++ + ++A +A+ A
Sbjct: 51 LYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQ-NRRSLGYAYINFSNPNDAYRAMEAL 109
Query: 86 HNKKTLPGASSPLQVKYADGE-LERLEHK--LFIGMLPKNVSEVEVSALFSNYGTIKDLQ 142
+ P P+++ ++ + RL K +FI L ++ + FS++GTI +
Sbjct: 110 N---YTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCK 166
Query: 143 ILRGSQQTSKGCAFLKYETKDQALAALEAING 174
+ SKG F+++E ++ A AA++ +NG
Sbjct: 167 VAMDVTGRSKGYGFVQFEKEESAQAAIDKLNG 198
>AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=144
Length = 144
Score = 65.5 bits (158), Expect = 7e-11, Method: Composition-based stats.
Identities = 35/83 (42%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 357 LFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMM 416
LFI + D L +AF FG V+ AKV VD+ TG S+ FGFV+++ AA +AIS M
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 417 NGYQLGGKKLKVQHKRDNKPGKP 439
+G +L G+ ++V D +P P
Sbjct: 97 DGKELNGRHIRVNPAND-RPSAP 118
>AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |
chr2:9943209-9946041 FORWARD LENGTH=662
Length = 662
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 75/163 (46%), Gaps = 26/163 (15%)
Query: 26 LFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNAC 85
L+VG + ++T+ +L F E V V + +D AT S G +V + D+A+KA+
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQK- 106
Query: 86 HNKKTLPGASSPLQVKYADGELERLEH-------------KLFIGMLPKNVSEVEVSALF 132
L Y +G++ R+ + LF+ L K+V + F
Sbjct: 107 ------------LNYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAF 154
Query: 133 SNYGTIKDLQILRGSQQTSKGCAFLKYETKDQALAALEAINGK 175
S GTI ++ S+G F++++T+D A A+E +NGK
Sbjct: 155 SGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLNGK 197
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 25/172 (14%)
Query: 24 VKLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVN 83
++V + + T+DEL T F ++ + +++D + SR FV + ++A +AV
Sbjct: 225 TNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGK-SRCFGFVNFENPEDAARAVE 283
Query: 84 ACHNKK-----TLPGASSPLQVKYADGELE---RLEH------------KLFIGMLPKNV 123
A + KK G + K ++ ELE R E L++ L V
Sbjct: 284 ALNGKKFDDKEWYVGKAQ----KKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTV 339
Query: 124 SEVEVSALFSNYGTIKDLQILRGSQQTSKGCAFLKYETKDQALAALEAINGK 175
++ ++ LF+ +GTI +++R TSKG F+ + +A L +NGK
Sbjct: 340 TDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMNGK 391
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 355 ANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAIS 414
N+++ ++ + D +L F +G + SA V D G S+CFGFV++++PE A A+
Sbjct: 225 TNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRD-GDGKSRCFGFVNFENPEDAARAVE 283
Query: 415 MMNGYQLGGKKLKV 428
+NG + K+ V
Sbjct: 284 ALNGKKFDDKEWYV 297
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 354 GANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAI 413
G NL++ ++ D+ L F FG + S KV D +G SK GFV++ + A +
Sbjct: 327 GLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRD-PSGTSKGSGFVAFSAASEASRVL 385
Query: 414 SMMNGYQLGGKKLKV---QHKRDNK 435
+ MNG +GGK L V Q K + +
Sbjct: 386 NEMNGKMVGGKPLYVALAQRKEERR 410
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 355 ANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAIS 414
NLF+ ++ + ++ L AF G ++S KV D G S+ +GFV +D+ ++A++AI
Sbjct: 134 GNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDH-MGQSRGYGFVQFDTEDSAKNAIE 192
Query: 415 MMNGYQLGGKKLKV 428
+NG L K++ V
Sbjct: 193 KLNGKVLNDKQIFV 206
>AT1G01080.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:45503-46789 REVERSE LENGTH=293
Length = 293
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 56/89 (62%)
Query: 349 VEGPPGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEA 408
V+ P L++ +IP+ + L + FQPFG VIS +V + TG S+ G+V+ S +
Sbjct: 102 VKKPRPCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINS 161
Query: 409 AQSAISMMNGYQLGGKKLKVQHKRDNKPG 437
A+ AI+ ++G ++GG++++V++ D PG
Sbjct: 162 AKIAIASLDGTEVGGREMRVRYSVDMNPG 190
>AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 79/169 (46%), Gaps = 19/169 (11%)
Query: 25 KLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNA 84
KLF+G + +ED L F F V E I+KD+AT +RG FV+ + A++ V
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL 66
Query: 85 CH--------NKKTLPGASSPLQVKYADGELE-----RLEHKLFIGMLPKNVSEVEVSAL 131
H KK +P + ++ L+ K+F+G L +V+E E
Sbjct: 67 KHIIDGKIVEAKKAVP-RDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKY 125
Query: 132 FSNYGTIKDLQILRGSQ-QTSKGCAFLKYETKDQALAALE----AINGK 175
F+ +G I D+ ++ + Q +G F+ Y++++ L+ +NGK
Sbjct: 126 FAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGK 174
>AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 79/169 (46%), Gaps = 19/169 (11%)
Query: 25 KLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNA 84
KLF+G + +ED L F F V E I+KD+AT +RG FV+ + A++ V
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL 66
Query: 85 CH--------NKKTLPGASSPLQVKYADGELE-----RLEHKLFIGMLPKNVSEVEVSAL 131
H KK +P + ++ L+ K+F+G L +V+E E
Sbjct: 67 KHIIDGKIVEAKKAVP-RDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKY 125
Query: 132 FSNYGTIKDLQILRGSQ-QTSKGCAFLKYETKDQALAALE----AINGK 175
F+ +G I D+ ++ + Q +G F+ Y++++ L+ +NGK
Sbjct: 126 FAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGK 174
>AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=129
Length = 129
Score = 63.9 bits (154), Expect = 2e-10, Method: Composition-based stats.
Identities = 33/77 (42%), Positives = 47/77 (61%)
Query: 357 LFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMM 416
LFI + D L +AF FG V+ AKV VD+ TG S+ FGFV+++ AA +AIS M
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 417 NGYQLGGKKLKVQHKRD 433
+G +L G+ ++V D
Sbjct: 97 DGKELNGRHIRVNPAND 113
>AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45A |
chr5:22295412-22298126 FORWARD LENGTH=387
Length = 387
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 81/160 (50%), Gaps = 10/160 (6%)
Query: 26 LFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNAC 85
L++G + + M E+ ++++F + +I++K T S G F+ S A++ +
Sbjct: 62 LWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERVLQ-T 120
Query: 86 HNKKTLPGASSPLQVKYADG-------ELERLEHKLFIGMLPKNVSEVEVSALFSN-YGT 137
+N +P ++ +A + E +H +F+G L V++ +S F N YG+
Sbjct: 121 YNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYMLSDTFKNVYGS 180
Query: 138 IKDLQ-ILRGSQQTSKGCAFLKYETKDQALAALEAINGKH 176
+K + +L + SKG F+++ +++ + A+ +NG++
Sbjct: 181 VKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQY 220
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 93/234 (39%), Gaps = 46/234 (19%)
Query: 26 LFVGQVPKHMTEDELLTMFKE-FALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNA 84
+FVG + +T+ L FK + V ++ D+ T S+G FV +E +A+
Sbjct: 156 IFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTE 215
Query: 85 CH---------------NKKTLPGASSPLQVKYAD--GELERLEHKLFIGMLPKNVSEVE 127
+ NK LP + Q G+ + +F+G L NV++ E
Sbjct: 216 MNGQYCSTRPMRIGPAANKNALPMQPAMYQNTQGANAGDNDPNNTTIFVGGLDANVTDDE 275
Query: 128 VSALFSNYGTIKDLQILRGSQQTSKGCAFLKYETKDQALAALEAINGKHKMEGSSVPLVV 187
+ ++F +G + ++I G K C F++Y K A AL +NG ++ G S+ L
Sbjct: 276 LKSIFGQFGELLHVKIPPG-----KRCGFVQYANKASAEHALSVLNGT-QLGGQSIRL-- 327
Query: 188 KWADTXXXXXXXXXXXXXXXXXNVPHADSQHPSLFGAMPMGYVP-PYNGYGYQA 240
W + P+ S G GY P P GYGY A
Sbjct: 328 SWGRS-------------------PNKQSDQAQWNGGGYYGYPPQPQGGYGYAA 362
>AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protein 3
| chr5:24560870-24562152 FORWARD LENGTH=309
Length = 309
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 45/77 (58%)
Query: 357 LFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMM 416
LFI + + L AF +G V+ +V +D+ TG S+ FGFV++ S EAA SAI +
Sbjct: 42 LFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQAL 101
Query: 417 NGYQLGGKKLKVQHKRD 433
+G L G+ +KV + D
Sbjct: 102 DGRDLHGRVVKVNYAND 118
>AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 |
chr1:26990777-26993489 REVERSE LENGTH=682
Length = 682
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 67/281 (23%), Positives = 106/281 (37%), Gaps = 49/281 (17%)
Query: 24 VKLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVN 83
++V +PK +T+DEL F ++ + ++KD++ SR FV S + A AV
Sbjct: 239 TNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGN-SRSFGFVNFVSPEAAAVAVE 297
Query: 84 ACH------------NKKTLPGASSPLQVKYADGELERLEH----KLFIGMLPKNVSEVE 127
+ + L+ K+ + R E L++ L +V++ +
Sbjct: 298 KMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEK 357
Query: 128 VSALFSNYGTIKDLQILRGSQQTSKGCAFLKYETKDQALAALEAINGKHKMEGSSVPLVV 187
+ +FS YG + +++ SQ S+G F+ Y ++AL A++ +NG KM G PL V
Sbjct: 358 LKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNG--KMIGRK-PLYV 414
Query: 188 KWADTXXXXXXXXXXXXXXXXX-------------------NVPHADSQHPSLFGAMPMG 228
A P + HP G G
Sbjct: 415 ALAQRKEERQAHLQSLFTQIRSPGTMSPVPSPMSGFHHHPPGGPMSGPHHPMFIGHNGQG 474
Query: 229 YVPPY-NGYGYQAPGSYGLMPYRMPP---------MQNQPG 259
VP GYGYQ G+ P PP Q QPG
Sbjct: 475 LVPSQPMGYGYQVQFMPGMRPGAGPPNFMMPFPLQRQTQPG 515
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 352 PPGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQS 411
P N+++ ++P+E D +L F +G + SA V D+ +G S+ FGFV++ SPEAA
Sbjct: 236 PSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQ-SGNSRSFGFVNFVSPEAAAV 294
Query: 412 AISMMNGYQLGGKKL---KVQHKRDNK 435
A+ MNG LG L + Q K D +
Sbjct: 295 AVEKMNGISLGEDVLYVGRAQKKSDRE 321
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 354 GANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAI 413
G+NL++ ++ D+ L F +G V S KV ++ + G+S+ FGFV+Y +PE A A+
Sbjct: 341 GSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMN-SQGLSRGFGFVAYSNPEEALLAM 399
Query: 414 SMMNGYQLGGKKLKV 428
MNG +G K L V
Sbjct: 400 KEMNGKMIGRKPLYV 414
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 356 NLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISM 415
N+FI ++ ++ L F FG ++S KV +D G SK +GFV ++ E AQ+AI
Sbjct: 147 NVFIKNLDASIDNKALYETFSSFGTILSCKVAMD-VVGRSKGYGFVQFEKEETAQAAIDK 205
Query: 416 MNGYQLGGKKLKVQH 430
+NG L K++ V H
Sbjct: 206 LNGMLLNDKQVFVGH 220
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 77/152 (50%), Gaps = 7/152 (4%)
Query: 26 LFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNAC 85
L+VG + + E LL +F + A V + + +D T S G +V + ++A +A+ +
Sbjct: 61 LYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRD-LTHRSLGYAYVNFANPEDASRAMESL 119
Query: 86 HNKKTLPGASSPLQVKYADGE-LERLEHK--LFIGMLPKNVSEVEVSALFSNYGTIKDLQ 142
+ P P+++ ++ + RL K +FI L ++ + FS++GTI +
Sbjct: 120 N---YAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCK 176
Query: 143 ILRGSQQTSKGCAFLKYETKDQALAALEAING 174
+ SKG F+++E ++ A AA++ +NG
Sbjct: 177 VAMDVVGRSKGYGFVQFEKEETAQAAIDKLNG 208
>AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 |
chr1:26990777-26993489 REVERSE LENGTH=682
Length = 682
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 67/281 (23%), Positives = 106/281 (37%), Gaps = 49/281 (17%)
Query: 24 VKLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVN 83
++V +PK +T+DEL F ++ + ++KD++ SR FV S + A AV
Sbjct: 239 TNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGN-SRSFGFVNFVSPEAAAVAVE 297
Query: 84 ACH------------NKKTLPGASSPLQVKYADGELERLEH----KLFIGMLPKNVSEVE 127
+ + L+ K+ + R E L++ L +V++ +
Sbjct: 298 KMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEK 357
Query: 128 VSALFSNYGTIKDLQILRGSQQTSKGCAFLKYETKDQALAALEAINGKHKMEGSSVPLVV 187
+ +FS YG + +++ SQ S+G F+ Y ++AL A++ +NG KM G PL V
Sbjct: 358 LKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNG--KMIGRK-PLYV 414
Query: 188 KWADTXXXXXXXXXXXXXXXXX-------------------NVPHADSQHPSLFGAMPMG 228
A P + HP G G
Sbjct: 415 ALAQRKEERQAHLQSLFTQIRSPGTMSPVPSPMSGFHHHPPGGPMSGPHHPMFIGHNGQG 474
Query: 229 YVPPY-NGYGYQAPGSYGLMPYRMPP---------MQNQPG 259
VP GYGYQ G+ P PP Q QPG
Sbjct: 475 LVPSQPMGYGYQVQFMPGMRPGAGPPNFMMPFPLQRQTQPG 515
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 352 PPGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQS 411
P N+++ ++P+E D +L F +G + SA V D+ +G S+ FGFV++ SPEAA
Sbjct: 236 PSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQ-SGNSRSFGFVNFVSPEAAAV 294
Query: 412 AISMMNGYQLGGKKL---KVQHKRDNK 435
A+ MNG LG L + Q K D +
Sbjct: 295 AVEKMNGISLGEDVLYVGRAQKKSDRE 321
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 354 GANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAI 413
G+NL++ ++ D+ L F +G V S KV ++ + G+S+ FGFV+Y +PE A A+
Sbjct: 341 GSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMN-SQGLSRGFGFVAYSNPEEALLAM 399
Query: 414 SMMNGYQLGGKKLKV 428
MNG +G K L V
Sbjct: 400 KEMNGKMIGRKPLYV 414
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 356 NLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISM 415
N+FI ++ ++ L F FG ++S KV +D G SK +GFV ++ E AQ+AI
Sbjct: 147 NVFIKNLDASIDNKALYETFSSFGTILSCKVAMD-VVGRSKGYGFVQFEKEETAQAAIDK 205
Query: 416 MNGYQLGGKKLKVQH 430
+NG L K++ V H
Sbjct: 206 LNGMLLNDKQVFVGH 220
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 77/152 (50%), Gaps = 7/152 (4%)
Query: 26 LFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNAC 85
L+VG + + E LL +F + A V + + +D T S G +V + ++A +A+ +
Sbjct: 61 LYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRD-LTHRSLGYAYVNFANPEDASRAMESL 119
Query: 86 HNKKTLPGASSPLQVKYADGE-LERLEHK--LFIGMLPKNVSEVEVSALFSNYGTIKDLQ 142
+ P P+++ ++ + RL K +FI L ++ + FS++GTI +
Sbjct: 120 N---YAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCK 176
Query: 143 ILRGSQQTSKGCAFLKYETKDQALAALEAING 174
+ SKG F+++E ++ A AA++ +NG
Sbjct: 177 VAMDVVGRSKGYGFVQFEKEETAQAAIDKLNG 208
>AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 81/174 (46%), Gaps = 25/174 (14%)
Query: 25 KLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVI----CPSRD---- 76
KLF+G + E+ L F + V E I++D+AT +RG F++ C S
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66
Query: 77 ---------EADKAVNACHNKKTLPGASSPLQVKY-ADGELERLEHKLFIGMLPKNVSEV 126
EA KAV +++ L +SP+ + G R + K+F+G LP +++E
Sbjct: 67 KHIIDGRTVEAKKAV-PRDDQQVLKRHASPIHLMSPVHGGGGRTK-KIFVGGLPSSITEE 124
Query: 127 EVSALFSNYGTIKDLQILRG-SQQTSKGCAFLKYETKDQALAAL----EAINGK 175
E F +GTI D+ ++ + Q +G F+ +++ D L +NGK
Sbjct: 125 EFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGK 178
>AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 81/174 (46%), Gaps = 25/174 (14%)
Query: 25 KLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVI----CPSRD---- 76
KLF+G + E+ L F + V E I++D+AT +RG F++ C S
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66
Query: 77 ---------EADKAVNACHNKKTLPGASSPLQVKY-ADGELERLEHKLFIGMLPKNVSEV 126
EA KAV +++ L +SP+ + G R + K+F+G LP +++E
Sbjct: 67 KHIIDGRTVEAKKAV-PRDDQQVLKRHASPIHLMSPVHGGGGRTK-KIFVGGLPSSITEE 124
Query: 127 EVSALFSNYGTIKDLQILRG-SQQTSKGCAFLKYETKDQALAAL----EAINGK 175
E F +GTI D+ ++ + Q +G F+ +++ D L +NGK
Sbjct: 125 EFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGK 178
>AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 31B
| chr5:20452677-20453965 REVERSE LENGTH=289
Length = 289
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 87/175 (49%), Gaps = 18/175 (10%)
Query: 25 KLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNA 84
KLFVG +P + L +F++ V+ +I ++ T SRG FV + +EA+KAV
Sbjct: 114 KLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEK 173
Query: 85 CHN----------KKTLPGASSP-LQVKYADGELERLEHKLFIGMLPKNVSEVEVSALFS 133
++ + P S P Q + D ++++G LP +V + LFS
Sbjct: 174 FNSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAF-----RIYVGNLPWDVDSGRLERLFS 228
Query: 134 NYGTIKDLQILRGSQQ-TSKGCAFLKYETKDQALAALEAINGKHKMEGSSVPLVV 187
+G + D +++ + S+G F++ +++ A+ A++G++ +EG ++ + V
Sbjct: 229 EHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQN-LEGRAIKVNV 282
>AT1G01080.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:45503-46789 REVERSE LENGTH=294
Length = 294
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 56/90 (62%), Gaps = 1/90 (1%)
Query: 349 VEGPPGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFV-DKATGVSKCFGFVSYDSPE 407
V+ P L++ +IP+ + L + FQPFG VIS +V + TG S+ G+V+ S
Sbjct: 102 VKKPRPCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVVSRNPQTGESRGSGYVTMGSIN 161
Query: 408 AAQSAISMMNGYQLGGKKLKVQHKRDNKPG 437
+A+ AI+ ++G ++GG++++V++ D PG
Sbjct: 162 SAKIAIASLDGTEVGGREMRVRYSVDMNPG 191
>AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 81/174 (46%), Gaps = 25/174 (14%)
Query: 25 KLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVI----CPSRD---- 76
KLF+G + E+ L F + V E I++D+AT +RG F++ C S
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66
Query: 77 ---------EADKAVNACHNKKTLPGASSPLQVKY-ADGELERLEHKLFIGMLPKNVSEV 126
EA KAV +++ L +SP+ + G R + K+F+G LP +++E
Sbjct: 67 KHIIDGRTVEAKKAV-PRDDQQVLKRHASPIHLMSPVHGGGGRTK-KIFVGGLPSSITEE 124
Query: 127 EVSALFSNYGTIKDLQILRG-SQQTSKGCAFLKYETKDQALAAL----EAINGK 175
E F +GTI D+ ++ + Q +G F+ +++ D L +NGK
Sbjct: 125 EFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGK 178
>AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 81/174 (46%), Gaps = 25/174 (14%)
Query: 25 KLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVI----CPSRD---- 76
KLF+G + E+ L F + V E I++D+AT +RG F++ C S
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66
Query: 77 ---------EADKAVNACHNKKTLPGASSPLQVKY-ADGELERLEHKLFIGMLPKNVSEV 126
EA KAV +++ L +SP+ + G R + K+F+G LP +++E
Sbjct: 67 KHIIDGRTVEAKKAV-PRDDQQVLKRHASPIHLMSPVHGGGGRTK-KIFVGGLPSSITEE 124
Query: 127 EVSALFSNYGTIKDLQILRG-SQQTSKGCAFLKYETKDQALAAL----EAINGK 175
E F +GTI D+ ++ + Q +G F+ +++ D L +NGK
Sbjct: 125 EFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGK 178
>AT4G14300.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:8231179-8232785 FORWARD LENGTH=411
Length = 411
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 77/179 (43%), Gaps = 21/179 (11%)
Query: 25 KLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNA 84
KLFVG + ED+L F + V + +++DK T RG FVI D+ +
Sbjct: 7 KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQE 66
Query: 85 CHNKKT---------------LPGASSPLQV-KYADGELERLEHKLFIGMLPKNVSEVEV 128
H+ T + G + L + + G+ K+F+G LP +++ E
Sbjct: 67 KHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEEF 126
Query: 129 SALFSNYGTIKDLQILRGSQQTS--KGCAFLKYETKDQALAALEAINGKHKMEGSSVPL 185
F YG + D+ I+ Q T+ +G F+ ++++D + L H + G V +
Sbjct: 127 RQYFEVYGPVTDVAIMY-DQATNRPRGFGFVSFDSEDAVDSVLHKT--FHDLSGKQVEV 182
>AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 4/85 (4%)
Query: 354 GANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAI 413
G+NL++ ++ + D L F PFG + S KV D +GVS+ GFV++ +PE A AI
Sbjct: 326 GSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRD-PSGVSRGSGFVAFSTPEEATRAI 384
Query: 414 SMMNGYQLGGKKLKV---QHKRDNK 435
+ MNG + K L V Q K D K
Sbjct: 385 TEMNGKMIVTKPLYVALAQRKEDRK 409
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 355 ANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAIS 414
N+FI ++ + + L F FG ++S KV VD +G SK +GFV YD+ EAAQ AI
Sbjct: 133 GNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVD-PSGQSKGYGFVQYDTDEAAQGAID 191
Query: 415 MMNGYQLGGKKLKV 428
+NG L K++ V
Sbjct: 192 KLNGMLLNDKQVYV 205
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 85/168 (50%), Gaps = 17/168 (10%)
Query: 24 VKLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVN 83
++V + + ++++EL +F EF + I++D + S+G FV + D+A +AV+
Sbjct: 224 TNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGK-SKGFGFVNFENSDDAARAVD 282
Query: 84 ACH-----NKKTLPGAS-------SPLQVKYADGELERLEHK----LFIGMLPKNVSEVE 127
A + +K+ G + + L+ K+ E + L++ L ++V++ +
Sbjct: 283 ALNGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDK 342
Query: 128 VSALFSNYGTIKDLQILRGSQQTSKGCAFLKYETKDQALAALEAINGK 175
+ F+ +GTI +++R S+G F+ + T ++A A+ +NGK
Sbjct: 343 LREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMNGK 390
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 70/152 (46%), Gaps = 2/152 (1%)
Query: 24 VKLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVN 83
L+VG + +T+ +L F + V V + +D TR S G +V + +A +A+N
Sbjct: 45 TSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALN 104
Query: 84 ACHNKKTLPGASSPLQVKYADGELERLE-HKLFIGMLPKNVSEVEVSALFSNYGTIKDLQ 142
N L G + + D L + +FI L K++ + FS +G I +
Sbjct: 105 EL-NFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCK 163
Query: 143 ILRGSQQTSKGCAFLKYETKDQALAALEAING 174
+ SKG F++Y+T + A A++ +NG
Sbjct: 164 VAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNG 195
>AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 4/85 (4%)
Query: 354 GANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAI 413
G+NL++ ++ + D L F PFG + S KV D +GVS+ GFV++ +PE A AI
Sbjct: 326 GSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRD-PSGVSRGSGFVAFSTPEEATRAI 384
Query: 414 SMMNGYQLGGKKLKV---QHKRDNK 435
+ MNG + K L V Q K D K
Sbjct: 385 TEMNGKMIVTKPLYVALAQRKEDRK 409
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 355 ANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAIS 414
N+FI ++ + + L F FG ++S KV VD +G SK +GFV YD+ EAAQ AI
Sbjct: 133 GNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVD-PSGQSKGYGFVQYDTDEAAQGAID 191
Query: 415 MMNGYQLGGKKLKV 428
+NG L K++ V
Sbjct: 192 KLNGMLLNDKQVYV 205
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 85/168 (50%), Gaps = 17/168 (10%)
Query: 24 VKLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVN 83
++V + + ++++EL +F EF + I++D + S+G FV + D+A +AV+
Sbjct: 224 TNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGK-SKGFGFVNFENSDDAARAVD 282
Query: 84 ACH-----NKKTLPGAS-------SPLQVKYADGELERLEHK----LFIGMLPKNVSEVE 127
A + +K+ G + + L+ K+ E + L++ L ++V++ +
Sbjct: 283 ALNGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDK 342
Query: 128 VSALFSNYGTIKDLQILRGSQQTSKGCAFLKYETKDQALAALEAINGK 175
+ F+ +GTI +++R S+G F+ + T ++A A+ +NGK
Sbjct: 343 LREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMNGK 390
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 70/152 (46%), Gaps = 2/152 (1%)
Query: 24 VKLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVN 83
L+VG + +T+ +L F + V V + +D TR S G +V + +A +A+N
Sbjct: 45 TSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALN 104
Query: 84 ACHNKKTLPGASSPLQVKYADGELERLE-HKLFIGMLPKNVSEVEVSALFSNYGTIKDLQ 142
N L G + + D L + +FI L K++ + FS +G I +
Sbjct: 105 EL-NFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCK 163
Query: 143 ILRGSQQTSKGCAFLKYETKDQALAALEAING 174
+ SKG F++Y+T + A A++ +NG
Sbjct: 164 VAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNG 195
>AT3G26420.1 | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motifs)
family protein with retrovirus zinc finger-like domain |
chr3:9671953-9673055 FORWARD LENGTH=245
Length = 245
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 45/77 (58%)
Query: 353 PGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSA 412
P FI + D+ L +AF+ +G ++ AKV +DK +G S+ FGF+++D +A A
Sbjct: 5 PEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEA 64
Query: 413 ISMMNGYQLGGKKLKVQ 429
I+ MNG L G+ + V
Sbjct: 65 IAAMNGMDLDGRTITVD 81
>AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding
protein 2 | chr4:16336732-16339892 FORWARD LENGTH=629
Length = 629
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 84/168 (50%), Gaps = 17/168 (10%)
Query: 24 VKLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVN 83
++V + + T+D+L F E+ + ++KD + S+G FV + D+A +AV
Sbjct: 215 TNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGK-SKGFGFVNFENADDAARAVE 273
Query: 84 ACH-----NKKTLPGAS-------SPLQVKYADGELERLEH----KLFIGMLPKNVSEVE 127
+ + +K+ G + + L+V+Y E + L++ L ++S+ +
Sbjct: 274 SLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEK 333
Query: 128 VSALFSNYGTIKDLQILRGSQQTSKGCAFLKYETKDQALAALEAINGK 175
+ +FS +GT+ +++R TSKG F+ + T ++A A+ ++GK
Sbjct: 334 LKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGK 381
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 75/154 (48%), Gaps = 6/154 (3%)
Query: 24 VKLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVN 83
L+VG + ++T+ +L F + V V + +D TR S G +V + +A +A+
Sbjct: 36 TSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQ 95
Query: 84 ACHNKKTLPGASSPLQVKYA--DGELERL-EHKLFIGMLPKNVSEVEVSALFSNYGTIKD 140
+ +P P++V Y+ D + R +FI L +++ + FS++G I
Sbjct: 96 ELN---YIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVS 152
Query: 141 LQILRGSQQTSKGCAFLKYETKDQALAALEAING 174
++ S SKG F++Y ++ A A+E +NG
Sbjct: 153 CKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNG 186
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 6/89 (6%)
Query: 355 ANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAIS 414
N+FI ++ + + L + F FG ++S KV VD ++G SK +GFV Y + E+AQ AI
Sbjct: 124 GNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVD-SSGQSKGYGFVQYANEESAQKAIE 182
Query: 415 MMNGYQLGGKKLKV-----QHKRDNKPGK 438
+NG L K++ V + +RD+ K
Sbjct: 183 KLNGMLLNDKQVYVGPFLRRQERDSTANK 211
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 355 ANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAIS 414
+NL++ ++ D+ L F PFG V S+KV D G SK GFV++ +PE A A+S
Sbjct: 318 SNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRD-PNGTSKGSGFVAFATPEEATEAMS 376
Query: 415 MMNGYQLGGKKLKV---QHKRDNK 435
++G + K L V Q K D +
Sbjct: 377 QLSGKMIESKPLYVAIAQRKEDRR 400
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 355 ANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAIS 414
N+++ ++ + D DL NAF +G++ SA V D G SK FGFV++++ + A A+
Sbjct: 215 TNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKD-GEGKSKGFGFVNFENADDAARAVE 273
Query: 415 MMNGYQLGGKKLKV 428
+NG++ K+ V
Sbjct: 274 SLNGHKFDDKEWYV 287
>AT3G19130.1 | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47B |
chr3:6611398-6613823 REVERSE LENGTH=435
Length = 435
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 81/160 (50%), Gaps = 10/160 (6%)
Query: 26 LFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNAC 85
L+VG + M E L + F V V +I++K T S G FV SR A++ +
Sbjct: 110 LWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQN- 168
Query: 86 HNKKTLPGASSPLQVKYAD---GELERLEH----KLFIGMLPKNVSEVEVSALFSN-YGT 137
++ +P + P ++ +A GE +E+ +F+G L +V++V + FS+ Y +
Sbjct: 169 YSGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHETFSDRYPS 228
Query: 138 IKDLQILRGSQQ-TSKGCAFLKYETKDQALAALEAINGKH 176
+K +++ S SKG F+++ +++ AL +NG +
Sbjct: 229 VKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAY 268
>AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256621 FORWARD LENGTH=358
Length = 358
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 71/158 (44%), Gaps = 15/158 (9%)
Query: 25 KLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNA 84
K+F+G + K T F ++ + + I++D+ T RG F+ DK +
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED 79
Query: 85 CHN--------KKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEVEVSALFSNYG 136
H K+T+P + Q K + K+F+G +P V+E E+ F+ YG
Sbjct: 80 THVINGKQVEIKRTIPKGAGGNQSK------DIKTKKIFVGGIPSTVTEDELKDFFAKYG 133
Query: 137 TIKDLQILRGSQQT-SKGCAFLKYETKDQALAALEAIN 173
+ + Q++R + S+G F+ +++++ L N
Sbjct: 134 NVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGN 171
>AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:8031554-8033517 REVERSE LENGTH=363
Length = 363
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 51/85 (60%), Gaps = 3/85 (3%)
Query: 354 GANLFIYHIPQEFGDQDLANAFQPFGRVISA-KVFVDKATGVSKCFGFVSYDSPEAAQSA 412
GANLFI ++ + ++ L + F FG + S K+ D TG S+ FGF+SYDS EA+ +A
Sbjct: 111 GANLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAA 170
Query: 413 ISMMNGYQLGGKKLKVQ--HKRDNK 435
I M G L +++ V +K+D K
Sbjct: 171 IESMTGQYLSNRQITVSYAYKKDTK 195
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 80/155 (51%), Gaps = 7/155 (4%)
Query: 26 LFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNAC 85
++VG + ++E+ L +F + V V + KD+ T + F+ S ++AD A+
Sbjct: 27 VYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVL 86
Query: 86 HNKKTLPGASSPLQVKYADGELERLE--HKLFIGMLPKNVSEVEVSALFSNYGTI-KDLQ 142
N L G P++V A + + L+ LFIG L +V E + FS +G I + +
Sbjct: 87 -NMIKLHG--KPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIASNPK 143
Query: 143 ILRG-SQQTSKGCAFLKYETKDQALAALEAINGKH 176
I+R S+G F+ Y++ + + AA+E++ G++
Sbjct: 144 IMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQY 178
>AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:15634980-15636331 REVERSE LENGTH=289
Length = 289
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 48/84 (57%)
Query: 357 LFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMM 416
+++ ++ D L + F G+V+ A+V D+ +G SK FGFV+YDS + Q+AI +
Sbjct: 206 VYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSL 265
Query: 417 NGYQLGGKKLKVQHKRDNKPGKPY 440
+G L G++++V P + Y
Sbjct: 266 DGADLDGRQIRVSEAEARPPRRQY 289
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 39/72 (54%)
Query: 357 LFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMM 416
LF+ ++P LA F+ G V +V DK TG S+ FGFV+ S ++A
Sbjct: 93 LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQF 152
Query: 417 NGYQLGGKKLKV 428
NGY+L G+ L+V
Sbjct: 153 NGYELDGRPLRV 164
>AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 58.5 bits (140), Expect = 8e-09, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 43/74 (58%)
Query: 355 ANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAIS 414
+ LF+ + D L AF FG V A V D+ TG S+ FGFVS+ ++A +AI
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 415 MMNGYQLGGKKLKV 428
M+G +L G++++V
Sbjct: 95 EMDGKELNGRQIRV 108
>AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 58.5 bits (140), Expect = 8e-09, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 43/74 (58%)
Query: 355 ANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAIS 414
+ LF+ + D L AF FG V A V D+ TG S+ FGFVS+ ++A +AI
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 415 MMNGYQLGGKKLKV 428
M+G +L G++++V
Sbjct: 95 EMDGKELNGRQIRV 108
>AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:13445552-13447592 FORWARD LENGTH=455
Length = 455
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 81/176 (46%), Gaps = 26/176 (14%)
Query: 25 KLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNA 84
KLF+G + E+ L F ++ + E I++D+ T +RG F++ A++ +
Sbjct: 16 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMD 75
Query: 85 CH----------------NKKTLPGASSPLQV----KYADGELERLEHKLFIGMLPKNVS 124
H +++ L +SP+ + +G R + K+F+G LP +++
Sbjct: 76 KHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTK-KIFVGGLPSSIT 134
Query: 125 EVEVSALFSNYGTIKDLQILRG-SQQTSKGCAFLKYETKDQALAAL----EAINGK 175
E E F +GTI D+ ++ + Q +G F+ +++++ L +NGK
Sbjct: 135 EAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGK 190
>AT4G26650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:13445265-13447592 FORWARD LENGTH=452
Length = 452
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 81/176 (46%), Gaps = 26/176 (14%)
Query: 25 KLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNA 84
KLF+G + E+ L F ++ + E I++D+ T +RG F++ A++ +
Sbjct: 13 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMD 72
Query: 85 CH----------------NKKTLPGASSPLQV----KYADGELERLEHKLFIGMLPKNVS 124
H +++ L +SP+ + +G R + K+F+G LP +++
Sbjct: 73 KHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTK-KIFVGGLPSSIT 131
Query: 125 EVEVSALFSNYGTIKDLQILRG-SQQTSKGCAFLKYETKDQALAAL----EAINGK 175
E E F +GTI D+ ++ + Q +G F+ +++++ L +NGK
Sbjct: 132 EAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGK 187
>AT3G11400.2 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation
initiation factor 3G1 | chr3:3578536-3580366 FORWARD
LENGTH=321
Length = 321
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 43/71 (60%)
Query: 359 IYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMMNG 418
+ ++ ++ + DL F PFG V V +D+ TGVS+ FGFV++ S E AQ AI+ +NG
Sbjct: 244 VTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKLNG 303
Query: 419 YQLGGKKLKVQ 429
Y L+V+
Sbjct: 304 YGYDNLILRVE 314
>AT3G11400.1 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation
initiation factor 3G1 | chr3:3578536-3580366 FORWARD
LENGTH=294
Length = 294
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%)
Query: 356 NLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISM 415
++ + ++ ++ + DL F PFG V V +D+ TGVS+ FGFV++ S E AQ AI+
Sbjct: 214 SVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINK 273
Query: 416 MNGYQLGGKKLKVQ 429
+NGY L+V+
Sbjct: 274 LNGYGYDNLILRVE 287
>AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding
protein 33 | chr3:19421619-19422855 FORWARD LENGTH=329
Length = 329
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 84/177 (47%), Gaps = 17/177 (9%)
Query: 25 KLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNA 84
+L+VG +P +T EL +F E V +V I+ DK T SRG FV S +EA +A+
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQM 176
Query: 85 CHN--------KKTLP-----GASSPLQVKYADGELERLE--HKLFIGMLPKNVSEVEVS 129
++ K P G + ++ K D ++ HK++ G L N++ +
Sbjct: 177 FNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLK 236
Query: 130 ALFSNY-GTIKDLQILRGSQQTSKGCAFLKYETKDQALAALEAINGKHKMEGSSVPL 185
F + G + I + S+G F+ +E+ + +AL +NG ++EG ++ L
Sbjct: 237 DAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGV-EVEGRALRL 292
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 348 QVEGPPGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPE 407
Q G G L++ ++P +L+ F G V+ ++ DK T S+ FGFV+ S E
Sbjct: 110 QASGEEG-RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIE 168
Query: 408 AAQSAISMMNGYQLGGKKLKV 428
A+ A+ M N Q+GG+ +KV
Sbjct: 169 EAKEAMQMFNSSQIGGRTVKV 189
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 9/78 (11%)
Query: 351 GPPGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQ 410
G G NL + FGDQ V+ AKV ++ TG S+ FGF+S++S E Q
Sbjct: 224 GNLGWNLTSQGLKDAFGDQP---------GVLGAKVIYERNTGRSRGFGFISFESAENVQ 274
Query: 411 SAISMMNGYQLGGKKLKV 428
SA++ MNG ++ G+ L++
Sbjct: 275 SALATMNGVEVEGRALRL 292
>AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=169
Length = 169
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%)
Query: 358 FIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMMN 417
F+ + D+DL F FG VI +K+ D+ +G S+ FGFV++ +A + AI MN
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 418 GYQLGGKKLKVQH 430
G +L G+ + V
Sbjct: 69 GKELDGRVITVNE 81
>AT2G43410.4 | Symbols: FPA | RNA binding | chr2:18026397-18030989
REVERSE LENGTH=901
Length = 901
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 76/153 (49%), Gaps = 23/153 (15%)
Query: 26 LFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNAC 85
L+VG + TE +L +F + +D + + +SRG F+ +EA A
Sbjct: 20 LWVGSLTPETTESDLTELFGRYGDIDRITVY------SSRGFAFIYYRHVEEAVAA---- 69
Query: 86 HNKKTLPGAS---SPLQVKYADGELERLEHKLFIGMLPKNVSEVEVSALFSNYGTIKDLQ 142
K+ L GA+ S ++++YA + L++G + NVS+ ++ FS +G I+D +
Sbjct: 70 --KEALQGANLNGSQIKIEYA--RPAKPCKSLWVGGIGPNVSKDDLEEEFSKFGKIEDFR 125
Query: 143 ILRGSQQTSKGCAFLKYETKDQALAALEAINGK 175
LR + AF+ Y D AL A +++NGK
Sbjct: 126 FLR-----ERKTAFIDYYEMDDALQA-KSMNGK 152
>AT2G43410.3 | Symbols: FPA | RNA binding | chr2:18026397-18030989
REVERSE LENGTH=901
Length = 901
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 76/153 (49%), Gaps = 23/153 (15%)
Query: 26 LFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNAC 85
L+VG + TE +L +F + +D + + +SRG F+ +EA A
Sbjct: 20 LWVGSLTPETTESDLTELFGRYGDIDRITVY------SSRGFAFIYYRHVEEAVAA---- 69
Query: 86 HNKKTLPGAS---SPLQVKYADGELERLEHKLFIGMLPKNVSEVEVSALFSNYGTIKDLQ 142
K+ L GA+ S ++++YA + L++G + NVS+ ++ FS +G I+D +
Sbjct: 70 --KEALQGANLNGSQIKIEYA--RPAKPCKSLWVGGIGPNVSKDDLEEEFSKFGKIEDFR 125
Query: 143 ILRGSQQTSKGCAFLKYETKDQALAALEAINGK 175
LR + AF+ Y D AL A +++NGK
Sbjct: 126 FLR-----ERKTAFIDYYEMDDALQA-KSMNGK 152
>AT2G43410.2 | Symbols: FPA | RNA binding | chr2:18026397-18030989
REVERSE LENGTH=901
Length = 901
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 76/153 (49%), Gaps = 23/153 (15%)
Query: 26 LFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNAC 85
L+VG + TE +L +F + +D + + +SRG F+ +EA A
Sbjct: 20 LWVGSLTPETTESDLTELFGRYGDIDRITVY------SSRGFAFIYYRHVEEAVAA---- 69
Query: 86 HNKKTLPGAS---SPLQVKYADGELERLEHKLFIGMLPKNVSEVEVSALFSNYGTIKDLQ 142
K+ L GA+ S ++++YA + L++G + NVS+ ++ FS +G I+D +
Sbjct: 70 --KEALQGANLNGSQIKIEYA--RPAKPCKSLWVGGIGPNVSKDDLEEEFSKFGKIEDFR 125
Query: 143 ILRGSQQTSKGCAFLKYETKDQALAALEAINGK 175
LR + AF+ Y D AL A +++NGK
Sbjct: 126 FLR-----ERKTAFIDYYEMDDALQA-KSMNGK 152
>AT4G36960.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:17427349-17429589 FORWARD LENGTH=379
Length = 379
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 79/167 (47%), Gaps = 14/167 (8%)
Query: 25 KLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNA 84
KL V +P + D L +F +++ ++KD++T SRG +V S ++A A+
Sbjct: 4 KLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALKG 63
Query: 85 CHNKKTLPGASSPLQVKYADGELERLE-----HKLFIGMLPKNVSEVEVSALFSNYGTIK 139
H + L+VK A + E + ++F+ +P +VSE + + F YG I
Sbjct: 64 EHFL-----GNRILEVKVATPKEEMRQPAKKVTRIFVARIPSSVSESDFRSHFERYGEIT 118
Query: 140 DLQILRG-SQQTSKGCAFLKYETKDQALAALEAINGKHKMEGSSVPL 185
DL + + + + +G F+ + + D +E H + G++V +
Sbjct: 119 DLYMPKDYNSKQHRGIGFITFSSADSVEDLMEDT---HDLGGTTVAV 162
>AT4G36960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:17427349-17429589 FORWARD LENGTH=379
Length = 379
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 79/167 (47%), Gaps = 14/167 (8%)
Query: 25 KLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNA 84
KL V +P + D L +F +++ ++KD++T SRG +V S ++A A+
Sbjct: 4 KLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALKG 63
Query: 85 CHNKKTLPGASSPLQVKYADGELERLE-----HKLFIGMLPKNVSEVEVSALFSNYGTIK 139
H + L+VK A + E + ++F+ +P +VSE + + F YG I
Sbjct: 64 EHFL-----GNRILEVKVATPKEEMRQPAKKVTRIFVARIPSSVSESDFRSHFERYGEIT 118
Query: 140 DLQILRG-SQQTSKGCAFLKYETKDQALAALEAINGKHKMEGSSVPL 185
DL + + + + +G F+ + + D +E H + G++V +
Sbjct: 119 DLYMPKDYNSKQHRGIGFITFSSADSVEDLMEDT---HDLGGTTVAV 162
>AT2G43410.1 | Symbols: FPA | RNA binding | chr2:18026397-18030989
REVERSE LENGTH=858
Length = 858
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 76/153 (49%), Gaps = 23/153 (15%)
Query: 26 LFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNAC 85
L+VG + TE +L +F + +D + + +SRG F+ +EA A
Sbjct: 20 LWVGSLTPETTESDLTELFGRYGDIDRITVY------SSRGFAFIYYRHVEEAVAA---- 69
Query: 86 HNKKTLPGAS---SPLQVKYADGELERLEHKLFIGMLPKNVSEVEVSALFSNYGTIKDLQ 142
K+ L GA+ S ++++YA + L++G + NVS+ ++ FS +G I+D +
Sbjct: 70 --KEALQGANLNGSQIKIEYA--RPAKPCKSLWVGGIGPNVSKDDLEEEFSKFGKIEDFR 125
Query: 143 ILRGSQQTSKGCAFLKYETKDQALAALEAINGK 175
LR + AF+ Y D AL A +++NGK
Sbjct: 126 FLR-----ERKTAFIDYYEMDDALQA-KSMNGK 152
>AT5G54580.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22171332-22172656 FORWARD LENGTH=156
Length = 156
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 46/91 (50%)
Query: 350 EGPPGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAA 409
+ P NLF+ + + + L AF FG V AKV D+ +G SK FGFV Y + E +
Sbjct: 51 QAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDS 110
Query: 410 QSAISMMNGYQLGGKKLKVQHKRDNKPGKPY 440
I+ M+G L G + ++ R + + Y
Sbjct: 111 AKGIAGMDGKFLDGWVIFAEYARPREQSQSY 141
>AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RNA
binding protein | chr4:12766223-12767952 REVERSE
LENGTH=329
Length = 329
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 83/173 (47%), Gaps = 14/173 (8%)
Query: 25 KLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNA 84
KLFVG + + L +F++ V+ +I ++ T SRG FV S DEA+ AV
Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 210
Query: 85 CHNKKTLPGASSPLQVKYADGELERLEH---------KLFIGMLPKNVSEVEVSALFSNY 135
N+ L G L V A R E ++++G LP +V + LFS +
Sbjct: 211 -FNRYDLNG--RLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEH 267
Query: 136 GTIKDLQILRGSQQ-TSKGCAFLKYETKDQALAALEAINGKHKMEGSSVPLVV 187
G + + +++ + S+G F+ D+ A+ A++G++ +EG ++ + V
Sbjct: 268 GKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQN-LEGRAIRVNV 319
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 46/88 (52%)
Query: 353 PGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSA 412
P +++ ++P + + L F G+V+ A+V D+ TG S+ FGFV+ + A
Sbjct: 242 PAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEA 301
Query: 413 ISMMNGYQLGGKKLKVQHKRDNKPGKPY 440
IS ++G L G+ ++V + P + Y
Sbjct: 302 ISALDGQNLEGRAIRVNVAEERPPRRGY 329
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%)
Query: 355 ANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAIS 414
A LF+ ++ + Q LA F+ G V A+V ++ T S+ FGFV+ S + A++A+
Sbjct: 150 AKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVE 209
Query: 415 MMNGYQLGGKKLKV 428
N Y L G+ L V
Sbjct: 210 KFNRYDLNGRLLTV 223
>AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=92
Length = 92
Score = 56.6 bits (135), Expect = 3e-08, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 40/70 (57%)
Query: 368 DQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMMNGYQLGGKKLK 427
D+DL F FG VI +K+ D+ +G S+ FGFV++ +A + AI MNG +L G+ +
Sbjct: 19 DEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVIT 78
Query: 428 VQHKRDNKPG 437
V + G
Sbjct: 79 VNEAQSRGSG 88
>AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=363
Length = 363
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%)
Query: 357 LFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMM 416
L++ ++ D L N F G+V+ A+V D+ +G SK FGFV+ S + Q AI+ +
Sbjct: 280 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 339
Query: 417 NGYQLGGKKLKVQHKRDNKP 436
NG L G++++V P
Sbjct: 340 NGADLDGRQIRVSEAEARPP 359
>AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%)
Query: 357 LFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMM 416
L++ ++ D L N F G+V+ A+V D+ +G SK FGFV+ S + Q AI+ +
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 417 NGYQLGGKKLKVQHKRDNKP 436
NG L G++++V P
Sbjct: 319 NGADLDGRQIRVSEAEARPP 338
>AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%)
Query: 357 LFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMM 416
L++ ++ D L N F G+V+ A+V D+ +G SK FGFV+ S + Q AI+ +
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 417 NGYQLGGKKLKVQHKRDNKP 436
NG L G++++V P
Sbjct: 319 NGADLDGRQIRVSEAEARPP 338
>AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%)
Query: 357 LFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMM 416
L++ ++ D L N F G+V+ A+V D+ +G SK FGFV+ S + Q AI+ +
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 417 NGYQLGGKKLKVQHKRDNKP 436
NG L G++++V P
Sbjct: 319 NGADLDGRQIRVSEAEARPP 338
>AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:22093678-22094540 REVERSE LENGTH=258
Length = 258
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 82/168 (48%), Gaps = 12/168 (7%)
Query: 24 VKLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVN 83
KL+ G +P ++ L + ++FA + V ++ ++ T SRG FV + ++ + ++
Sbjct: 85 TKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIID 144
Query: 84 ACHNKKTLPGASSPLQVKYADG-------ELERLEHKLFIGMLPKNVSEVEVSALFSNYG 136
+ L A L+V +AD EHKLF+G L V+ ++ F G
Sbjct: 145 NLDGTEYLGRA---LKVNFADKPKPNKEPLYPETEHKLFVGNLSWTVTSESLAGAFRECG 201
Query: 137 TIKDLQIL-RGSQQTSKGCAFLKYETKDQALAALEAINGKHKMEGSSV 183
+ +++ G S+G F+ Y +K + ALE+++G ++EG ++
Sbjct: 202 DVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDG-FELEGRAI 248
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 45/79 (56%)
Query: 357 LFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMM 416
LF+ ++ + LA AF+ G V+ A+V D TG S+ +GFV Y S ++A+ +
Sbjct: 179 LFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESL 238
Query: 417 NGYQLGGKKLKVQHKRDNK 435
+G++L G+ ++V + K
Sbjct: 239 DGFELEGRAIRVNLAQGKK 257
>AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr4:13554983-13557763 REVERSE
LENGTH=415
Length = 415
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 85/177 (48%), Gaps = 23/177 (12%)
Query: 26 LFVGQVPKHMTEDELLTMFKE-FALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNA 84
+FVG + +T+ L FK ++ V ++ D+ T S+G FV E +A+
Sbjct: 175 VFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTE 234
Query: 85 -----CHNK--KTLPGASS-PLQVKYAD--------GELERLEHKLFIGMLPKNVSEVEV 128
C ++ +T P A+ PL ++ A GE + +F+G + ++V+E ++
Sbjct: 235 MNGQYCSSRPMRTGPAANKKPLTMQPASYQNTQGNSGESDPTNTTIFVGAVDQSVTEDDL 294
Query: 129 SALFSNYGTIKDLQILRGSQQTSKGCAFLKYETKDQALAALEAINGKHKMEGSSVPL 185
++F +G + ++I G K C F++Y + A AL +NG ++ G S+ L
Sbjct: 295 KSVFGQFGELVHVKIPAG-----KRCGFVQYANRACAEQALSVLNGT-QLGGQSIRL 345
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 352 PPGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQS 411
P +F+ + Q + DL + F FG ++ K+ K +C GFV Y + A+
Sbjct: 275 PTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGK-----RC-GFVQYANRACAEQ 328
Query: 412 AISMMNGYQLGGKKLKVQHKR--DNKPGKP 439
A+S++NG QLGG+ +++ R NK +P
Sbjct: 329 ALSVLNGTQLGGQSIRLSWGRSPSNKQTQP 358
>AT5G47320.1 | Symbols: RPS19 | ribosomal protein S19 |
chr5:19203801-19204951 FORWARD LENGTH=212
Length = 212
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 40/66 (60%)
Query: 368 DQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMMNGYQLGGKKLK 427
+ L +AF F V A+V +K TG S+ +GFV++ S ++A SAIS MNG +L G +
Sbjct: 44 EHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAMNGQELNGFNIS 103
Query: 428 VQHKRD 433
V +D
Sbjct: 104 VNVAKD 109
>AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=126
Length = 126
Score = 55.8 bits (133), Expect = 6e-08, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 39/65 (60%)
Query: 368 DQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMMNGYQLGGKKLK 427
D+DL F FG VI +K+ D+ +G S+ FGFV++ +A + AI MNG +L G+ +
Sbjct: 19 DEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVIT 78
Query: 428 VQHKR 432
V +
Sbjct: 79 VNEAQ 83
>AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:6067394-6069098 REVERSE LENGTH=369
Length = 369
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 63/148 (42%), Gaps = 14/148 (9%)
Query: 25 KLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNA 84
KLFVG V T + F +F V + I+ D+ T RG FV A+K +
Sbjct: 67 KLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLEE 126
Query: 85 CHN--------KKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEVEVSALFSNYG 136
H K+TLP +K K+F+G LP + E E+ F YG
Sbjct: 127 DHVIDDRKVDLKRTLPRGDKDTDIKAV-----SKTRKIFVGGLPPLLEEDELKNYFCVYG 181
Query: 137 TIKDLQILRGSQQ-TSKGCAFLKYETKD 163
I + QI+ S+G F+ ++T+D
Sbjct: 182 DIIEHQIMYDHHTGRSRGFGFVTFQTED 209
>AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4673027-4675950 FORWARD LENGTH=427
Length = 427
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 42/72 (58%)
Query: 356 NLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISM 415
N+F+ + E D L +F F A+V D+ TG S+ FGFVS+ + + AQ+AI+
Sbjct: 145 NIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINE 204
Query: 416 MNGYQLGGKKLK 427
MNG L ++++
Sbjct: 205 MNGKWLSSRQIR 216
>AT1G58470.1 | Symbols: ATRBP1, RBP1 | RNA-binding protein 1 |
chr1:21727374-21728539 FORWARD LENGTH=360
Length = 360
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 56/242 (23%), Positives = 95/242 (39%), Gaps = 46/242 (19%)
Query: 25 KLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNA 84
KLFVG + K +E+ L F + V E + K+K T RG FV + + KA+
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRD 66
Query: 85 CH-------------NKKTLPGASSPLQVKYADGELERLE---------------HKLFI 116
H K L P +++ + +++++ K+F+
Sbjct: 67 THFILGKPVDVRKAIRKHEL--YQQPFSMQFLERKVQQMNGGLREMSSNGVTSRTKKIFV 124
Query: 117 GMLPKNVSEVEVSALFSNYGTIKDLQILR-GSQQTSKGCAFLKYETKDQALAALEAINGK 175
G L N +E E + F +G D+ ++ G +G F+ Y+++D ++E +
Sbjct: 125 GGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSED----SVEVV--- 177
Query: 176 HKMEGSSVPLVVKWADTXXXXXXXXXXXXXXXXXNVPHADSQHPSLFGAMPMGYVPPYNG 235
M+ + L K + N+P + S F A P YVP NG
Sbjct: 178 --MQSNFHELSDKRVEVKRAIPKEGIQSNNGNAVNIPPSYSS----FQATP--YVPEQNG 229
Query: 236 YG 237
YG
Sbjct: 230 YG 231
>AT5G06000.1 | Symbols: EIF3G2, ATEIF3G2 | eukaryotic translation
initiation factor 3G2 | chr5:1808169-1809742 FORWARD
LENGTH=308
Length = 308
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 37/60 (61%)
Query: 370 DLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMMNGYQLGGKKLKVQ 429
DL F+PFG V V +D+ T +S+ FGFVS+ S E AQ AI+ +NGY L+V+
Sbjct: 221 DLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAINKLNGYGYDNLILRVE 280
>AT5G04600.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:1323700-1325486 FORWARD LENGTH=222
Length = 222
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 349 VEGPPGAN----LFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYD 404
V PP N L+I IP F + ++ F FG V +V +K TG SK FGF+ ++
Sbjct: 50 VTTPPLQNKATVLYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFE 109
Query: 405 SPEAAQSAISMMNGYQLGGKKLKV 428
PE A+ A MN Y L LKV
Sbjct: 110 DPEVAEIAAGAMNDYLLMEHMLKV 133
>AT2G21660.2 | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, and
rna binding 2 | chr2:9265477-9266316 REVERSE LENGTH=159
Length = 159
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%)
Query: 358 FIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMMN 417
F+ + D+ L AF +G VI +K+ D+ TG S+ FGFV++ +A + AI MN
Sbjct: 11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70
Query: 418 GYQLGGKKLKVQH 430
G L G+ + V
Sbjct: 71 GQDLDGRSITVNE 83
>AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold,
circadian rhythm, and rna binding 2 |
chr2:9265477-9266316 REVERSE LENGTH=176
Length = 176
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%)
Query: 358 FIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMMN 417
F+ + D+ L AF +G VI +K+ D+ TG S+ FGFV++ +A + AI MN
Sbjct: 11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70
Query: 418 GYQLGGKKLKVQH 430
G L G+ + V
Sbjct: 71 GQDLDGRSITVNE 83
>AT1G18630.1 | Symbols: GR-RBP6 | glycine-rich RNA-binding protein 6
| chr1:6415226-6416283 FORWARD LENGTH=155
Length = 155
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 38/58 (65%)
Query: 371 LANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMMNGYQLGGKKLKV 428
L AF FG+++ A V +D+ +G+S+ FGFV+YDS E A +A+ M +L G+ + V
Sbjct: 52 LKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQAMQNKELDGRIIGV 109
>AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256014 FORWARD LENGTH=231
Length = 231
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 80/178 (44%), Gaps = 23/178 (12%)
Query: 25 KLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNA 84
K+F+G + K T F ++ + + I++D+ T RG F+ DK +
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED 79
Query: 85 CHN--------KKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEVEVSALFSNYG 136
H K+T+P + Q K + K+F+G +P V+E E+ F+ YG
Sbjct: 80 THVINGKQVEIKRTIPKGAGGNQSK------DIKTKKIFVGGIPSTVTEDELKDFFAKYG 133
Query: 137 TIKDLQILRGSQQT-SKGCAFLKYETK---DQALAALEAINGKHKMEGSSVPLVVKWA 190
+ + Q++R + S+G F+ ++++ D+ L+ I+ M + V L KW
Sbjct: 134 NVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMID----MADTQVSL-YKWG 186
>AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protein 5
| chr1:27915346-27916857 FORWARD LENGTH=289
Length = 289
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 4/72 (5%)
Query: 359 IYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMMNG 418
I + EFG L AF +G V+ AK+ VD+ TG S+ F FV++ S E A +A+ ++G
Sbjct: 41 ISYSTDEFG---LREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM-QLDG 96
Query: 419 YQLGGKKLKVQH 430
L G++++V +
Sbjct: 97 QDLHGRRIRVNY 108
>AT1G54080.1 | Symbols: UBP1A | oligouridylate-binding protein 1A |
chr1:20183923-20186824 REVERSE LENGTH=426
Length = 426
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 43/72 (59%)
Query: 356 NLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISM 415
N+F+ + E D L ++F F A+V D+ TG S+ FGFVS+ + + AQ+AI+
Sbjct: 149 NIFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINE 208
Query: 416 MNGYQLGGKKLK 427
MNG + ++++
Sbjct: 209 MNGKWVSSRQIR 220
>AT3G52150.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342074-19343090 FORWARD LENGTH=253
Length = 253
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 86/174 (49%), Gaps = 17/174 (9%)
Query: 25 KLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNA 84
++++G +P+ +T ++L + +E V++V ++ DK + SR F S ++A+ V
Sbjct: 77 RVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEK 136
Query: 85 CH-----------NKKTLPGASSP-LQV-KYADGELERLEHKLFIGMLPKNVSEVEVSAL 131
+ N P ASSP L V + D +K+++G L K V++ + L
Sbjct: 137 LNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLAKTVTKEMLENL 196
Query: 132 FSNYGTIKDLQILR--GSQQTSKGCAFLKYETKDQALAALEAINGKHKMEGSSV 183
FS G + ++ R G+ + S G F+ + +++ AA+ A+N +EG +
Sbjct: 197 FSEKGKVVSAKVSRVPGTSK-STGFGFVTFSSEEDVEAAIVALNNSL-LEGQKI 248
>AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342074-19343090 FORWARD LENGTH=253
Length = 253
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 86/174 (49%), Gaps = 17/174 (9%)
Query: 25 KLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNA 84
++++G +P+ +T ++L + +E V++V ++ DK + SR F S ++A+ V
Sbjct: 77 RVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEK 136
Query: 85 CH-----------NKKTLPGASSP-LQV-KYADGELERLEHKLFIGMLPKNVSEVEVSAL 131
+ N P ASSP L V + D +K+++G L K V++ + L
Sbjct: 137 LNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLAKTVTKEMLENL 196
Query: 132 FSNYGTIKDLQILR--GSQQTSKGCAFLKYETKDQALAALEAINGKHKMEGSSV 183
FS G + ++ R G+ + S G F+ + +++ AA+ A+N +EG +
Sbjct: 197 FSEKGKVVSAKVSRVPGTSK-STGFGFVTFSSEEDVEAAIVALNNSL-LEGQKI 248
>AT1G47500.1 | Symbols: ATRBP47C', RBP47C' | RNA-binding protein
47C' | chr1:17432682-17434805 FORWARD LENGTH=434
Length = 434
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 75/170 (44%), Gaps = 24/170 (14%)
Query: 24 VKLFVGQVPKHMTEDELLTMFKE-FALVDEVNIIKDKATRASRGCCFVICPSRDEADKAV 82
+ +FVG + +++ L F E + V ++ D T S+G FV +E KA+
Sbjct: 199 LSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAM 258
Query: 83 NA-----CHNKKTLPGASSPLQVK-------------YADGELERLEHKLFIGMLPKNVS 124
C ++ G ++P + + E + + +F+G L +V+
Sbjct: 259 TEMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSVT 318
Query: 125 EVEVSALFSNYGTIKDLQILRGSQQTSKGCAFLKYETKDQALAALEAING 174
+ ++ FS +G I ++I G KGC F+++ + A ALE +NG
Sbjct: 319 DEDLKQPFSEFGEIVSVKIPVG-----KGCGFVQFVNRPNAEEALEKLNG 363
>AT5G06210.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) family
protein | chr5:1878497-1879515 FORWARD LENGTH=146
Length = 146
Score = 53.5 bits (127), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 46/79 (58%)
Query: 354 GANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAI 413
+ LFI + +Q L+ AF G+V+ A++ +D+ + SK FGFV++ S + AQ A+
Sbjct: 33 ASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKAL 92
Query: 414 SMMNGYQLGGKKLKVQHKR 432
NG QL G+ + V + +
Sbjct: 93 MEFNGQQLNGRTIFVDYAK 111
>AT1G51510.1 | Symbols: Y14 | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr1:19103072-19104753 REVERSE
LENGTH=202
Length = 202
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 39/65 (60%)
Query: 357 LFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMM 416
+ + + +E ++D+ NAF FG + + + +D+ +G K + + Y+ E AQSAIS M
Sbjct: 97 ILVSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISAM 156
Query: 417 NGYQL 421
NG +L
Sbjct: 157 NGAEL 161
>AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr5:1192461-1195413 FORWARD LENGTH=310
Length = 310
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 42/77 (54%)
Query: 354 GANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAI 413
G+ +F+ + E D+DL AF FG ++ ++ +++ TG S+ FGF+++ A +I
Sbjct: 6 GSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESI 65
Query: 414 SMMNGYQLGGKKLKVQH 430
M+G G + + V
Sbjct: 66 REMHGRDFGDRVISVNR 82
>AT4G13860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:8022601-8023162 FORWARD LENGTH=87
Length = 87
Score = 52.8 bits (125), Expect = 4e-07, Method: Composition-based stats.
Identities = 25/62 (40%), Positives = 39/62 (62%)
Query: 368 DQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMMNGYQLGGKKLK 427
D L AF +G V+ A V D+ T S+ FGFV+Y S A++A+S M+G +L G+++
Sbjct: 16 DDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGMDGKELNGRRVS 75
Query: 428 VQ 429
V+
Sbjct: 76 VK 77
>AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 |
chr3:5558676-5560993 REVERSE LENGTH=537
Length = 537
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 355 ANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAIS 414
ANL++ ++ L F PFG ++S KV + G SK FGFV +D+ ++A SA S
Sbjct: 112 ANLYVKNLDSSITSSCLERMFCPFGSILSCKVV--EENGQSKGFGFVQFDTEQSAVSARS 169
Query: 415 MMNGYQLGGKKLKV 428
++G + GKKL V
Sbjct: 170 ALHGSMVYGKKLFV 183
>AT4G16280.1 | Symbols: FCA | RNA binding;abscisic acid binding |
chr4:9207164-9210632 REVERSE LENGTH=505
Length = 505
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 35/48 (72%)
Query: 144 LRGSQQTSKGCAFLKYETKDQALAALEAINGKHKMEGSSVPLVVKWAD 191
+R + S+GC F+KY +K+ A+AA++ +NG + M G + PL+V++A+
Sbjct: 1 MRDEYRQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAE 48
>AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 |
chr1:12433356-12434735 REVERSE LENGTH=407
Length = 407
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 355 ANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAIS 414
N+++ ++ + D DL F FG + SA V D G S+ FGFV+++ EAA +AI
Sbjct: 119 TNVYVKNLVETATDADLKRLFGEFGEITSAVVMKD-GEGKSRRFGFVNFEKAEAAVTAIE 177
Query: 415 MMNGYQLGGKKLKV 428
MNG + K+L V
Sbjct: 178 KMNGVVVDEKELHV 191
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 74/302 (24%), Positives = 118/302 (39%), Gaps = 56/302 (18%)
Query: 26 LFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNAC 85
++V + + T+ +L +F EF + ++KD + SR FV + ++A+ AV A
Sbjct: 121 VYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGK-SRRFGFV---NFEKAEAAVTAI 176
Query: 86 HNKKTLPGASSPLQVKYADGELERLEH--------------------KLFIGMLPKNVSE 125
+ L V A + R E L++ L +V
Sbjct: 177 EKMNGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDN 236
Query: 126 VEVSALFSNYGTIKDLQILRGSQQTSKGCAFLKYETKDQALAALEAINGKHKMEGSSVPL 185
++ LFS +GTI +++ S SKG F+++ T ++A A+ +NG KM G+ P+
Sbjct: 237 TKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMNG--KMVGNK-PI 293
Query: 186 VVKWADTXXXXXXXXXXXXXXXXXNVPHADSQHPSLFG-----AMPMGYVPPYNGYGYQA 240
V A N P + Q P +F A + P GY +Q
Sbjct: 294 YVSLAQC----KEQHKLHLQTQFNNPPPSPHQQP-IFSQVVAPATMLSQQTPLRGYNFQP 348
Query: 241 PGSYG-LMPYRMPPMQNQPGFHNMMPHMNHGNALRPDLGPSMNPRNYHVPPASYVSSYPA 299
G MP PP+ + P F M+P RP L PPA V Y +
Sbjct: 349 YSMCGSRMPNSCPPI-SIPNF--MVPQ-----PFRPTL----------YPPAPLVGLYGS 390
Query: 300 VP 301
+P
Sbjct: 391 LP 392
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 14/100 (14%)
Query: 354 GANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAI 413
G NL++ ++ + L F FG + S KV V + G+SK GFV + + E A A+
Sbjct: 222 GMNLYVKNLDDSVDNTKLEELFSEFGTITSCKVMVH-SNGISKGVGFVEFSTSEEASKAM 280
Query: 414 SMMNGYQLGGK-------------KLKVQHKRDNKPGKPY 440
MNG +G K KL +Q + +N P P+
Sbjct: 281 LKMNGKMVGNKPIYVSLAQCKEQHKLHLQTQFNNPPPSPH 320
>AT2G44710.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:18432902-18436629 FORWARD LENGTH=809
Length = 809
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 79/172 (45%), Gaps = 12/172 (6%)
Query: 25 KLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNA 84
++FVG + K +E++L +F V EV I+K+ T+ S+G F+ + ++A +AV
Sbjct: 215 EIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVKE 274
Query: 85 CHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEVEVSALFSNYG--TIKDLQ 142
S + K + LF+G + K + + +YG + D+
Sbjct: 275 LK--------SPMINGKKCGVTASQDNDTLFVGNICKIWTPEALREKLKHYGVENMDDIT 326
Query: 143 ILRGSQQT--SKGCAFLKYETKDQALAALEAINGKHKMEGSSVPLVVKWADT 192
++ S ++G AFL++ ++ A+ A + + K M G P V + D+
Sbjct: 327 LVEDSNNVNMNRGYAFLEFSSRSDAMDAHKRLVKKDVMFGVEKPAKVSFTDS 378
>AT3G52660.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19522598-19524735 FORWARD LENGTH=471
Length = 471
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 76/173 (43%), Gaps = 18/173 (10%)
Query: 25 KLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNA 84
++++G +P TE +L V EV I+++K + +G FV S+D A +A++
Sbjct: 93 EVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDT 152
Query: 85 CHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEVEVSALFSNYG-TIKDLQI 143
+N + + K + +H+LF+G +P+N E ++ + G ++ +++
Sbjct: 153 LNN--------TDFRGKRIKCSTTQAKHRLFLGNVPRNWMESDIKKAANRIGPGVQIVEL 204
Query: 144 LRGSQQTSKGCAFLKYETKDQALAALEAINGKHKMEGSSVPL-----VVKWAD 191
+ Q + F E + A A K KM S L V WA+
Sbjct: 205 PKEPQNMGRNRGFAFIEYYNHACAEYS----KQKMSNPSFKLDDNAPTVSWAE 253
>AT3G52660.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19522598-19524735 FORWARD LENGTH=471
Length = 471
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 76/173 (43%), Gaps = 18/173 (10%)
Query: 25 KLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNA 84
++++G +P TE +L V EV I+++K + +G FV S+D A +A++
Sbjct: 93 EVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDT 152
Query: 85 CHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEVEVSALFSNYG-TIKDLQI 143
+N + + K + +H+LF+G +P+N E ++ + G ++ +++
Sbjct: 153 LNN--------TDFRGKRIKCSTTQAKHRLFLGNVPRNWMESDIKKAANRIGPGVQIVEL 204
Query: 144 LRGSQQTSKGCAFLKYETKDQALAALEAINGKHKMEGSSVPL-----VVKWAD 191
+ Q + F E + A A K KM S L V WA+
Sbjct: 205 PKEPQNMGRNRGFAFIEYYNHACAEYS----KQKMSNPSFKLDDNAPTVSWAE 253
>AT3G46020.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:16912511-16913250 REVERSE LENGTH=102
Length = 102
Score = 51.2 bits (121), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 42/75 (56%)
Query: 355 ANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAIS 414
A LF+ + DQ L F PFG++ A++ D T K FGF+++DS + A+ A+
Sbjct: 7 AQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALK 66
Query: 415 MMNGYQLGGKKLKVQ 429
++G + G+ + V+
Sbjct: 67 SLDGKIVDGRLIFVE 81
>AT2G37510.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:15743112-15744504 REVERSE LENGTH=142
Length = 142
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 41/67 (61%)
Query: 357 LFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMM 416
LF+ + + ++ L +AF FG+++ A+V D+ +G SK FGFV+Y + E A+ A + M
Sbjct: 36 LFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEM 95
Query: 417 NGYQLGG 423
N L G
Sbjct: 96 NAKFLDG 102
>AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2555034-2555829 REVERSE LENGTH=143
Length = 143
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 41/83 (49%)
Query: 357 LFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMM 416
LFI + +Q L +AF FG V ++ DK +G S+ FGFV + A SA M
Sbjct: 43 LFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAM 102
Query: 417 NGYQLGGKKLKVQHKRDNKPGKP 439
+G L G+ L++ + G P
Sbjct: 103 DGKGLLGRPLRISFALERVRGGP 125
>AT5G09880.1 | Symbols: | Splicing factor, CC1-like |
chr5:3081646-3085179 REVERSE LENGTH=527
Length = 527
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 83/186 (44%), Gaps = 42/186 (22%)
Query: 26 LFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFV--------------- 70
+F Q+P TE ++ F + V +V +I D+ +R S+G ++
Sbjct: 170 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALS 229
Query: 71 ----------ICPSRDEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLP 120
+ PS EA+K N + T G + P + KL++G L
Sbjct: 230 GQLFLGQPVMVKPS--EAEK--NLAQSNSTTVGGTGP------------ADRKLYVGNLH 273
Query: 121 KNVSEVEVSALFSNYGTIKDLQI-LRGSQQTSKGCAFLKYETKDQALAALEAINGKHKME 179
N+SE+++ +F +G ++ +Q+ L KG F+++ + + AA A+NGK ++
Sbjct: 274 FNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIALNGKLEIA 333
Query: 180 GSSVPL 185
G ++ +
Sbjct: 334 GRTIKV 339
>AT2G21690.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:9270114-9270597 REVERSE LENGTH=117
Length = 117
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 38/60 (63%)
Query: 358 FIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMMN 417
F+ + Q+ ++DL + F FG VI +K+ D+ TG S+ FGFV+++ ++ AI +M+
Sbjct: 10 FVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDAIMIMD 69
>AT3G04500.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:1212065-1213795 REVERSE LENGTH=245
Length = 245
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 40/73 (54%)
Query: 357 LFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMM 416
LF + E D L+ AF F AKV DK TG +K +GFVS+ +P +A+ M
Sbjct: 139 LFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAAALKEM 198
Query: 417 NGYQLGGKKLKVQ 429
NG +G + +K++
Sbjct: 199 NGKYVGNRPIKLR 211
>AT3G47120.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:17351334-17352769 REVERSE LENGTH=352
Length = 352
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 41/76 (53%)
Query: 355 ANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAIS 414
A +++ IP + + DL F +G ++ + DK TG SK F F++Y+ + A+
Sbjct: 36 AYVYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVD 95
Query: 415 MMNGYQLGGKKLKVQH 430
+NG + G+ +KV H
Sbjct: 96 NLNGALVLGRTIKVDH 111