Miyakogusa Predicted Gene

Lj1g3v4764230.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4764230.1 gi|3695062|gb|AF064789.1|.path1.1
         (411 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G03100.1 | Symbols:  | Rho GTPase activating protein with PAK...   409   e-114
AT2G46710.1 | Symbols:  | Rho GTPase activating protein with PAK...   342   3e-94
AT5G22400.1 | Symbols:  | Rho GTPase activating protein with PAK...   335   5e-92
AT3G11490.1 | Symbols:  | rac GTPase activating protein | chr3:3...   325   3e-89
AT1G08340.1 | Symbols:  | Rho GTPase activating protein with PAK...   307   8e-84

>AT4G03100.1 | Symbols:  | Rho GTPase activating protein with
           PAK-box/P21-Rho-binding domain | chr4:1374361-1375913
           FORWARD LENGTH=430
          Length = 430

 Score =  409 bits (1052), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 201/296 (67%), Positives = 227/296 (76%), Gaps = 7/296 (2%)

Query: 1   MVACSVDSPDD-------VISAVHPMEIGWPTNVKHVTHVTFDRFNGFLGLPLELEVHXX 53
           +V+C VD+  D       + SAVH MEIGWPTNV+H+THVTFDRF+GFLGLP EL+V   
Sbjct: 53  VVSCRVDNRQDDGGVGGGISSAVHHMEIGWPTNVRHITHVTFDRFHGFLGLPHELQVEIP 112

Query: 54  XXXXXXXXXXXXXXXXXMQCSYDSKGNSVPTILLLMQERLYSQGGLMAEGIFRINPENGQ 113
                            MQCSYD KGNSVPTILLLMQERLYSQ GL AEGIFRINPEN Q
Sbjct: 113 CRVPSASVSVFGVSAESMQCSYDEKGNSVPTILLLMQERLYSQQGLKAEGIFRINPENSQ 172

Query: 114 EEHLRDQLNRGVVPDNIDVHCLAGLIKAWFRELPSGVLDGLSPEQVLECNTEEEFVQLVK 173
           EEH+RDQLNRG+VP+NIDVHCLAGLIKAWFRELPSGVLDGLSPE+VL CNTE+E V+L+K
Sbjct: 173 EEHVRDQLNRGIVPENIDVHCLAGLIKAWFRELPSGVLDGLSPEEVLNCNTEDESVELIK 232

Query: 174 QLKPTELALLNWALDLMADVVEEEEHNKMDARNIAMVFAPNMTQMSDPLTALMHAVQVMN 233
           QLKPTE ALLNWA+DLMADVVEEEE NKM+ARNIAMVFAPNMTQM+DPLTALMHAVQVMN
Sbjct: 233 QLKPTESALLNWAVDLMADVVEEEESNKMNARNIAMVFAPNMTQMTDPLTALMHAVQVMN 292

Query: 234 LLKTLILKTLSEREEATTAGYXXXXXXXXXXXXEDEYDSQLEMYTSAELRGSQSDC 289
           LLKTLI KTL+EREE  T               + + D+  +M  S E + + S+C
Sbjct: 293 LLKTLITKTLAEREENATGSEGYSPSHSSNSQTDSDSDNAQDMEVSCESQATDSEC 348


>AT2G46710.1 | Symbols:  | Rho GTPase activating protein with
           PAK-box/P21-Rho-binding domain | chr2:19192105-19194656
           FORWARD LENGTH=455
          Length = 455

 Score =  342 bits (876), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 166/250 (66%), Positives = 197/250 (78%), Gaps = 4/250 (1%)

Query: 1   MVACSVD-SPDDVISAVHPMEIGWPTNVKHVTHVTFDRFNGFLGLPLELEVHXXXXXXXX 59
           +++C+++   DDV+++   M+IGWPT VKHV+HVTFDRFNGFLGLP ELE          
Sbjct: 87  VMSCAMERGEDDVVAS---MDIGWPTEVKHVSHVTFDRFNGFLGLPSELEPEVPPRAPSA 143

Query: 60  XXXXXXXXXXXMQCSYDSKGNSVPTILLLMQERLYSQGGLMAEGIFRINPENGQEEHLRD 119
                      MQCSYD +GNSVPTILL MQ+RLY++GGL AEGIFRINP+NG+EEH+R 
Sbjct: 144 SVSVFGVSAKSMQCSYDDRGNSVPTILLRMQKRLYTEGGLKAEGIFRINPDNGKEEHVRR 203

Query: 120 QLNRGVVPDNIDVHCLAGLIKAWFRELPSGVLDGLSPEQVLECNTEEEFVQLVKQLKPTE 179
           QLN GVVP  IDVHCLAGLIKAWFRELP+GVLD L+PEQV+ CNTEE+  +LV  L P E
Sbjct: 204 QLNCGVVPRGIDVHCLAGLIKAWFRELPTGVLDVLTPEQVMRCNTEEDCSRLVILLPPVE 263

Query: 180 LALLNWALDLMADVVEEEEHNKMDARNIAMVFAPNMTQMSDPLTALMHAVQVMNLLKTLI 239
            A+L+WA+ LMADVVE E+ NKM+ARN+AMVFAPNMTQM+DPLTAL+HAVQVMN LKTLI
Sbjct: 264 SAILDWAIGLMADVVEHEQFNKMNARNVAMVFAPNMTQMADPLTALIHAVQVMNFLKTLI 323

Query: 240 LKTLSEREEA 249
           L  L ERE A
Sbjct: 324 LMNLKERENA 333


>AT5G22400.1 | Symbols:  | Rho GTPase activating protein with
           PAK-box/P21-Rho-binding domain | chr5:7423050-7425335
           REVERSE LENGTH=466
          Length = 466

 Score =  335 bits (858), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 159/231 (68%), Positives = 183/231 (79%)

Query: 19  MEIGWPTNVKHVTHVTFDRFNGFLGLPLELEVHXXXXXXXXXXXXXXXXXXXMQCSYDSK 78
           MEIGWPTNV+HV HVTFDRFNGFLGLP+E E                     MQ SYDS+
Sbjct: 115 MEIGWPTNVRHVAHVTFDRFNGFLGLPVEFEPEVPRRAPSASATVFGVSTESMQLSYDSR 174

Query: 79  GNSVPTILLLMQERLYSQGGLMAEGIFRINPENGQEEHLRDQLNRGVVPDNIDVHCLAGL 138
           GN VPTILLLMQ  LYSQGGL AEGIFR+  EN +EE +R+QLNRG +P+ IDVHCLAGL
Sbjct: 175 GNCVPTILLLMQNCLYSQGGLQAEGIFRLTAENSEEEAVREQLNRGFIPERIDVHCLAGL 234

Query: 139 IKAWFRELPSGVLDGLSPEQVLECNTEEEFVQLVKQLKPTELALLNWALDLMADVVEEEE 198
           IKAWFRELP+ VLD LSPEQV++C TEEE V+LV+ L PTE ALL+WA++LMADVV+ E 
Sbjct: 235 IKAWFRELPTSVLDSLSPEQVMQCQTEEENVELVRLLPPTEAALLDWAINLMADVVQYEH 294

Query: 199 HNKMDARNIAMVFAPNMTQMSDPLTALMHAVQVMNLLKTLILKTLSEREEA 249
            NKM++RNIAMVFAPNMTQM DPLTALM+AVQVMN LKTLI KTL ER+++
Sbjct: 295 LNKMNSRNIAMVFAPNMTQMDDPLTALMYAVQVMNFLKTLIEKTLRERQDS 345


>AT3G11490.1 | Symbols:  | rac GTPase activating protein |
           chr3:3617523-3619567 REVERSE LENGTH=435
          Length = 435

 Score =  325 bits (834), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 155/231 (67%), Positives = 186/231 (80%)

Query: 19  MEIGWPTNVKHVTHVTFDRFNGFLGLPLELEVHXXXXXXXXXXXXXXXXXXXMQCSYDSK 78
           MEIG PT+V+HV HVTFDRF+GFLGLP+E E                     MQ SYD++
Sbjct: 91  MEIGVPTDVRHVAHVTFDRFHGFLGLPVEFEPEVPRRAPSASATVFGVSTESMQLSYDTR 150

Query: 79  GNSVPTILLLMQERLYSQGGLMAEGIFRINPENGQEEHLRDQLNRGVVPDNIDVHCLAGL 138
           GN VPTILL+MQ  LYS+GGL  EGIFRIN ENGQEE++R++LN+G++PDNIDVHCLA L
Sbjct: 151 GNIVPTILLMMQSHLYSRGGLRVEGIFRINGENGQEEYIREELNKGIIPDNIDVHCLASL 210

Query: 139 IKAWFRELPSGVLDGLSPEQVLECNTEEEFVQLVKQLKPTELALLNWALDLMADVVEEEE 198
           IKAWFRELPSGVLD LSPEQV+E  +E+E V+LV+ L  TE +LL+WA++LMADVVE E+
Sbjct: 211 IKAWFRELPSGVLDSLSPEQVMESESEDECVELVRLLPSTEASLLDWAINLMADVVEMEQ 270

Query: 199 HNKMDARNIAMVFAPNMTQMSDPLTALMHAVQVMNLLKTLILKTLSEREEA 249
            NKM+ARNIAMVFAPNMTQM DPLTALM+AVQVMN LKTLI+KTL +R+E+
Sbjct: 271 LNKMNARNIAMVFAPNMTQMLDPLTALMYAVQVMNFLKTLIVKTLKDRKES 321


>AT1G08340.1 | Symbols:  | Rho GTPase activating protein with
           PAK-box/P21-Rho-binding domain | chr1:2631308-2632669
           FORWARD LENGTH=331
          Length = 331

 Score =  307 bits (787), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 142/233 (60%), Positives = 180/233 (77%)

Query: 19  MEIGWPTNVKHVTHVTFDRFNGFLGLPLELEVHXXXXXXXXXXXXXXXXXXXMQCSYDSK 78
           M+IG PTN++HV HVTFDRF+GFLGLP E E                     MQ SYDS+
Sbjct: 1   MDIGGPTNIRHVAHVTFDRFDGFLGLPSEFEPDVPRKAPSASATVFGVSTESMQLSYDSR 60

Query: 79  GNSVPTILLLMQERLYSQGGLMAEGIFRINPENGQEEHLRDQLNRGVVPDNIDVHCLAGL 138
           GN VP ILLL+Q RLY QGGL AEG+FRI  EN +EE +R+QLN+G++PD IDVHCLAGL
Sbjct: 61  GNCVPVILLLLQSRLYDQGGLQAEGVFRITGENSEEEFVREQLNKGIIPDGIDVHCLAGL 120

Query: 139 IKAWFRELPSGVLDGLSPEQVLECNTEEEFVQLVKQLKPTELALLNWALDLMADVVEEEE 198
           IKAWFRELP GVLD L  EQV++C ++E+FV++V+ L  TE +LLNWA++LMADV++ E 
Sbjct: 121 IKAWFRELPRGVLDPLPSEQVMQCESDEDFVKVVRLLPQTEASLLNWAINLMADVIQFEH 180

Query: 199 HNKMDARNIAMVFAPNMTQMSDPLTALMHAVQVMNLLKTLILKTLSEREEATT 251
            NKM++RN+A+VFAPNM+QM+DPLTALM+AVQVM LLK+L  KT+ ERE +++
Sbjct: 181 VNKMNSRNLALVFAPNMSQMADPLTALMYAVQVMKLLKSLTEKTVREREASSS 233