Miyakogusa Predicted Gene
- Lj1g3v4763880.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v4763880.1 Non Chatacterized Hit- tr|I1JQE3|I1JQE3_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.30280
PE,81.61,0,MMS1_N,NULL; CPSF_A,Cleavage/polyadenylation specificity
factor, A subunit, C-terminal; SPLICING FAC,CUFF.33168.1
(1330 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G11960.1 | Symbols: | Cleavage and polyadenylation specifici... 1611 0.0
AT3G11960.2 | Symbols: | Cleavage and polyadenylation specifici... 1502 0.0
AT4G05420.2 | Symbols: DDB1A | damaged DNA binding protein 1A | ... 112 1e-24
AT4G05420.1 | Symbols: DDB1A | damaged DNA binding protein 1A | ... 112 2e-24
AT4G21100.1 | Symbols: DDB1B | damaged DNA binding protein 1B | ... 111 4e-24
AT3G55200.1 | Symbols: | Cleavage and polyadenylation specifici... 98 4e-20
AT3G55220.1 | Symbols: | Cleavage and polyadenylation specifici... 98 4e-20
>AT3G11960.1 | Symbols: | Cleavage and polyadenylation specificity
factor (CPSF) A subunit protein | chr3:3786431-3793160
FORWARD LENGTH=1379
Length = 1379
Score = 1611 bits (4171), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 815/1314 (62%), Positives = 990/1314 (75%), Gaps = 33/1314 (2%)
Query: 34 PGAILHVLYAHIRSPSSNDIVFAKETSIELVVIGEDGNVLTLSDQPVFGTIKDLAVLPWN 93
P +L V Y + RSPSS DIVF KET IELVVIGEDG V ++ +Q VFGTIKDLAV+P +
Sbjct: 44 PSVVLQVAYGYFRSPSSRDIVFGKETCIELVVIGEDGIVESVCEQYVFGTIKDLAVIPQS 103
Query: 94 DKFRGARDPKMWGKDLLVALSDSGKLSVLTFCNEMHRFFPTTHVQLSNPGNIRDVPGRML 153
K + GKDLL LSDSGKLS L+F NEMHRF P HVQLS PGN R GRML
Sbjct: 104 SKLYS--NSLQMGKDLLAVLSDSGKLSFLSFSNEMHRFSPIQHVQLSTPGNSRIQLGRML 161
Query: 154 AVDSSGCFIAASAYEGRLALFSMSMTG-NDIIDERIMYPLEGEGTASSSRSIQKTSIHGA 212
+DSSG F+A SAY R ALFS+S + DII +RI YP E G SS ++I G
Sbjct: 162 TIDSSGLFLAVSAYHDRFALFSLSTSSMGDIIHQRISYPSEDGGNGSSIQAIS-----GT 216
Query: 213 IWSMCFISQDSRQLSKEHNPVLAVIINRKGEY--ELQLLEWNVKAQTIFVISSNVEAGPL 270
IWSMCFIS+D + SKE+ P+LA++INRKG EL L WNVK ++I +IS VE G L
Sbjct: 217 IWSMCFISKDFNE-SKEYAPILAIVINRKGSLMNELALFRWNVKEESICLISEYVETGAL 275
Query: 271 ALNIVEVPNSQGLALLFRDGDVLLMDFKDPHNPCCVYKTSLHFLPSATEEQTFMEDSCKL 330
A +IVEVP+S G A LFR GDVLLMD +DP NPCC+++TSL F+P++ E+ F+E+SC++
Sbjct: 276 AHSIVEVPHSSGFAFLFRIGDVLLMDLRDPQNPCCLFRTSLDFVPASLMEEHFVEESCRV 335
Query: 331 HDVDDERFSVAACALLQLSDY-----DPMCIDSDNDGTNTGHKHVCSWSWEPENNRDPRM 385
D DDE +V CALL+L D+ DPM ID+++D K+V SW+WEPENN +PRM
Sbjct: 336 QDGDDEGCNVVVCALLELRDHEVRDHDPMFIDTESDIGKLSSKNVSSWTWEPENNHNPRM 395
Query: 386 IFCVDTGELFMIEIFSDADGPKISLSECLYKGLPCNALLWVEGGYLAAFVDMADGMVLKL 445
I C+D G+ FM E+ + DG K++LSECLYKGLPC +LW+EGG+LA F +MADG V KL
Sbjct: 396 IICLDNGDFFMFELIYEDDGVKVNLSECLYKGLPCKDILWIEGGFLATFAEMADGTVFKL 455
Query: 446 KDGRLCYTNPIQNIAPILDVAVVDYHDEKHDQMVACCGVAPEGSLRIIQSGINAEKLLRT 505
+L + + IQNIAPILD +V+D +EK DQ+ ACCGV PEGSLRII+SGIN EKLL+T
Sbjct: 456 GTEKLHWMSSIQNIAPILDFSVMDDQNEKRDQIFACCGVTPEGSLRIIRSGINVEKLLKT 515
Query: 506 PSIYEGISGTWTVRMKVTDSYHSFLVLSFLAETRILSVGLSFTDVTDSVGFQPNVCTLAC 565
+Y+GI+GTWTV+MK+TD YHSFLVLSF+ ETR+LSVGLSF DVTDSVGFQ +VCT AC
Sbjct: 516 APVYQGITGTWTVKMKLTDVYHSFLVLSFVEETRVLSVGLSFKDVTDSVGFQSDVCTFAC 575
Query: 566 GLVSDGLLVQICQSSVKLCLPTKAAHSEGIPLSSPICTSWSPNNLNISLGVVGHGFIVVS 625
GLV+DGLLVQI Q +++LC+PT AHS+GIP+SSP +SW P N++ISLG VG IVVS
Sbjct: 576 GLVADGLLVQIHQDAIRLCMPTMDAHSDGIPVSSPFFSSWFPENVSISLGAVGQNLIVVS 635
Query: 626 TSNPCFLFILGVRLLSTYQYEIYEMQHLGLLNELSCISIPTQKNEKTESNSTISANNSCI 685
TSNPCFL ILGV+ +S+ EIYE+Q + L E+SCIS+P + K S + S +N C
Sbjct: 636 TSNPCFLSILGVKSVSSQCCEIYEIQRVTLQYEVSCISVPQKHIGKKRSRDS-SPDNFCK 694
Query: 686 PSFLSGVDVNKTFVIGTHRPSVEIWSFAPDG-GVKVVACGTISLTNTTGTAIDFCVPQDV 744
+ S ++ TF+IGTH+PSVE+ SF DG GV+V+A G +SLTNT GT I C+PQDV
Sbjct: 695 AAIPSAMEQGYTFLIGTHKPSVEVLSFTEDGVGVRVLASGLVSLTNTMGTVISGCIPQDV 754
Query: 745 RLVFVDKYYVLAGLRNGMLLRFEWPAEPSPTSPINVVDTALSSINLVNSATTAFEKRNDL 804
RLV VD+ YVL+GLRNGMLLRFEW A S +S +N D + T K+++L
Sbjct: 755 RLVLVDQLYVLSGLRNGMLLRFEW-APFSNSSGLNCPDYF---SHCKEEMDTVVGKKDNL 810
Query: 805 PSTLQLIAIRRIGVTPVFLVPLNDTLDADIIALSDRPWLLHSARHSLSYTSISFQPSSHV 864
P L LIA RRIG+TPVFLVP +D+LD+DIIALSDRPWLL +AR SLSYTSISFQPS+H
Sbjct: 811 PVNLLLIATRRIGITPVFLVPFSDSLDSDIIALSDRPWLLQTARQSLSYTSISFQPSTHA 870
Query: 865 TPVCSLECPRGILFVAEDSLHLVEMVHSKRLNMWKFNLEGTPRKVLYHNESRMLLVMRTE 924
TPVCS ECP+GILFV+E+ LHLVEMVHSKR N KF L GTPRKV+YH+ES++L+VMRT+
Sbjct: 871 TPVCSFECPQGILFVSENCLHLVEMVHSKRRNAQKFQLGGTPRKVIYHSESKLLIVMRTD 930
Query: 925 LDCGTCLSDISCVDPLSWSVVSSFRLEPGETGKSMELVRFGSEQVLVVGTSMSSGPAIMP 984
L TC SDI CVDPLS SV+SS++L+PGETGKSMELVR G+E VLVVGTS+SSGPAI+P
Sbjct: 931 L-YDTCTSDICCVDPLSGSVLSSYKLKPGETGKSMELVRVGNEHVLVVGTSLSSGPAILP 989
Query: 985 SGEAESAKGRLLVLCLDHVQNSDSGSMTFCSKAESSSQKTSPFHEIVAYAPEQLXXXXXX 1044
SGEAES KGR+++LCL+H QNSDSGSMT CSKA SSSQ+TSPFH++V Y E L
Sbjct: 990 SGEAESTKGRVIILCLEHTQNSDSGSMTICSKACSSSQRTSPFHDVVGYTTENLSSSSLC 1049
Query: 1045 XXXXXXXXXGIKLDENEVWQFRLAYATTWPGMVLAIFPYLDRYFLASAGNVFYVCGFPND 1104
GIKLDE E WQ RLA +TTWPGMVLAI PYLD YFLASAGN FYVCGFPND
Sbjct: 1050 SSPDDYSYDGIKLDEAETWQLRLASSTTWPGMVLAICPYLDHYFLASAGNAFYVCGFPND 1109
Query: 1105 TPRRVRRYAMGKTRFMITSLTAHFTRIAVGDCRDGILFFSYHEEGKKLEQLYCDPSVRLV 1164
+P R++R+A+G+TRFMITSL +FTRI VGDCRDG+LF+SYHEE KKL Q+YCDP+ RLV
Sbjct: 1110 SPERMKRFAVGRTRFMITSLRTYFTRIVVGDCRDGVLFYSYHEESKKLHQIYCDPAQRLV 1169
Query: 1165 ADCILMDDNTAVVSDRKGSIAVLS-SDHLE------DNASPECNLTLSCAYFMAEVAMSI 1217
ADC LMD N+ VSDRKGSIA+LS DH + + +SPE NL L+CAY+M E+AMSI
Sbjct: 1170 ADCFLMDANSVAVSDRKGSIAILSCKDHSDFGMKHLEYSSPESNLNLNCAYYMGEIAMSI 1229
Query: 1218 RKGSYSYRLPPAYDVLP--GDNGPGDTLRNTIIASTLLGSIMIFIPLSREEYELLEALQA 1275
+KG Y+L PA DVL G + DT +TIIA TLLGSI +F P+S EEYELLE +QA
Sbjct: 1230 KKGCNIYKL-PADDVLRSYGLSKSIDTADDTIIAGTLLGSIFVFAPISSEEYELLEGVQA 1288
Query: 1276 RLVLHHLTAPVLGNDHNEFRSRENPVGVPKILDGDMLTQFLELTSMQQNTILSS 1329
+L +H LTAPVLGNDHNEFR RENP KILDGDML QFLELT+ QQ ++LS+
Sbjct: 1289 KLGIHPLTAPVLGNDHNEFRGRENPSQARKILDGDMLAQFLELTNRQQESVLST 1342
>AT3G11960.2 | Symbols: | Cleavage and polyadenylation specificity
factor (CPSF) A subunit protein | chr3:3786431-3793160
FORWARD LENGTH=1329
Length = 1329
Score = 1502 bits (3888), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 778/1321 (58%), Positives = 950/1321 (71%), Gaps = 97/1321 (7%)
Query: 34 PGAILHVLYAHIRSPSSNDIVFAKETSIELVVIGEDGNVLTLSDQPVFGTIKDLAVLPWN 93
P +L V Y + RSPSS DIVF KET IELVVIGEDG V ++ +Q VFGTIKDLAV+P +
Sbjct: 44 PSVVLQVAYGYFRSPSSRDIVFGKETCIELVVIGEDGIVESVCEQYVFGTIKDLAVIPQS 103
Query: 94 DKFRGARDPKMWGKDLLVALSDSGKLSVLTFCNEMHRFFPTTHVQLSNPGNIRDVPGRML 153
K + GKDLL LSDS
Sbjct: 104 SKLYS--NSLQMGKDLLAVLSDS------------------------------------- 124
Query: 154 AVDSSGCFIAASAYEGRLALFSMSMTGNDIIDERIMYPLEGEGTASSSRSIQKTSIHGAI 213
G+L+ S S N++ RI YP E G SS ++I G I
Sbjct: 125 ---------------GKLSFLSFS---NEM--HRISYPSEDGGNGSSIQAIS-----GTI 159
Query: 214 WSMCFISQDSRQLSKEHNPVLAVIINRKGEY--ELQLLEWNVKAQTIFVISSNVEAGPLA 271
WSMCFIS+D + SKE+ P+LA++INRKG EL L WNVK ++I +IS VE G LA
Sbjct: 160 WSMCFISKDFNE-SKEYAPILAIVINRKGSLMNELALFRWNVKEESICLISEYVETGALA 218
Query: 272 LNIVEVPNSQGLALLFRDGDVLLMDFKDPHNPCCVYKTSLHFLPSATEEQTFMEDSCKLH 331
+IVEVP+S G A LFR GDVLLMD +DP NPCC+++TSL F+P++ E+ F+E+SC++
Sbjct: 219 HSIVEVPHSSGFAFLFRIGDVLLMDLRDPQNPCCLFRTSLDFVPASLMEEHFVEESCRVQ 278
Query: 332 DVDDERFSVAACALLQLSDY-----DPMCIDSDNDGTNTGHKHVCSWSWEPENNRDPRMI 386
D DDE +V CALL+L D+ DPM ID+++D K+V SW+WEPENN +PRMI
Sbjct: 279 DGDDEGCNVVVCALLELRDHEVRDHDPMFIDTESDIGKLSSKNVSSWTWEPENNHNPRMI 338
Query: 387 FCVDTGELFMIEIFSDADGPKISLSECLYKGLPCNALLWVEGGYLAAFVDMADGMVLKLK 446
C+D G+ FM E+ + DG K++LSECLYKGLPC +LW+EGG+LA F +MADG V KL
Sbjct: 339 ICLDNGDFFMFELIYEDDGVKVNLSECLYKGLPCKDILWIEGGFLATFAEMADGTVFKLG 398
Query: 447 DGRLCYTNPIQNIAPILDVAVVDYHDEKHDQMVACCGVAPEGSLRIIQSGINAEKLLRTP 506
+L + + IQNIAPILD +V+D +EK DQ+ ACCGV PEGSLRII+SGIN EKLL+T
Sbjct: 399 TEKLHWMSSIQNIAPILDFSVMDDQNEKRDQIFACCGVTPEGSLRIIRSGINVEKLLKTA 458
Query: 507 SIYEGISGTWTVRMKVTDSYHSFLVLSFLAETRILSVGLSFTDVTDSVGFQPNVCTLACG 566
+Y+GI+GTWTV+MK+TD YHSFLVLSF+ ETR+LSVGLSF DVTDSVGFQ +VCT ACG
Sbjct: 459 PVYQGITGTWTVKMKLTDVYHSFLVLSFVEETRVLSVGLSFKDVTDSVGFQSDVCTFACG 518
Query: 567 LVSDGLLVQICQSSVKLCLPTKAAHSEGIPLSSPICTSWSPNNLNISLGVVGHGFIVVST 626
LV+DGLLVQI Q +++LC+PT AHS+GIP+SSP +SW P N++ISLG VG IVVST
Sbjct: 519 LVADGLLVQIHQDAIRLCMPTMDAHSDGIPVSSPFFSSWFPENVSISLGAVGQNLIVVST 578
Query: 627 SNPCFLFILGVRLLSTYQYEIYEMQHLGLLNELSCISIPTQKNEKTESNSTISANNSCIP 686
SNPCFL ILGV+ +S+ EIYE+Q + L E+SCIS+P + K S + S +N C
Sbjct: 579 SNPCFLSILGVKSVSSQCCEIYEIQRVTLQYEVSCISVPQKHIGKKRSRDS-SPDNFCKA 637
Query: 687 SFLSGVDVNKTFVIGTHRPSVEIWSFAPDG-GVKVVACGTISLTNTTGTAIDFCVPQDVR 745
+ S ++ TF+IGTH+PSVE+ SF DG GV+V+A G +SLTNT GT I C+PQDVR
Sbjct: 638 AIPSAMEQGYTFLIGTHKPSVEVLSFTEDGVGVRVLASGLVSLTNTMGTVISGCIPQDVR 697
Query: 746 LVFVDKYYVLAGLRNGMLLRFEWPAEPSPTSPINVVDTALSSINLVNSATTAFEKRNDLP 805
LV VD+ YVL+GLRNGMLLRFEW A S +S +N D + T K+++LP
Sbjct: 698 LVLVDQLYVLSGLRNGMLLRFEW-APFSNSSGLNCPDYF---SHCKEEMDTVVGKKDNLP 753
Query: 806 STLQLIAIRRIGVTPVFLVPLNDTLDADIIALSDRPWLLHSARHSLSYTSISFQPSSHVT 865
L LIA RRIG+TPVFLVP +D+LD+DIIALSDRPWLL +AR SLSYTSISFQPS+H T
Sbjct: 754 VNLLLIATRRIGITPVFLVPFSDSLDSDIIALSDRPWLLQTARQSLSYTSISFQPSTHAT 813
Query: 866 PVCSLECPRGILFVAEDSLHLVEMVHSKRLNMWKFNLEGTPRKVLYHNESRMLLVMRTEL 925
PVCS ECP+GILFV+E+ LHLVEMVHSKR N KF L GTPRKV+YH+ES++L+VMRT+L
Sbjct: 814 PVCSFECPQGILFVSENCLHLVEMVHSKRRNAQKFQLGGTPRKVIYHSESKLLIVMRTDL 873
Query: 926 DCGTCLSDISCVDPLSWSVVSSFRLEPGETGKSMELVRFGSEQVLVVGTSMSSGPAIMPS 985
TC SDI CVDPLS SV+SS++L+PGETGKSMELVR G+E VLVVGTS+SSGPAI+PS
Sbjct: 874 -YDTCTSDICCVDPLSGSVLSSYKLKPGETGKSMELVRVGNEHVLVVGTSLSSGPAILPS 932
Query: 986 GEAESAKGRLLVLCLDHVQNSDSGSMTFCSKAESSSQKTSPFHEIVAYAPEQLXXXXXXX 1045
GEAES KGR+++LCL+H QNSDSGSMT CSKA SSSQ+TSPFH++V Y E L
Sbjct: 933 GEAESTKGRVIILCLEHTQNSDSGSMTICSKACSSSQRTSPFHDVVGYTTENLSSSSLCS 992
Query: 1046 XXXXXXXXGIKLDENEVWQFRLAYATTWPGMVLAIFPYLDRYFLASAGNVFYVCGFPNDT 1105
GIKLDE E WQ RLA +TTWPGMVLAI PYLD YFLASAGN FYVCGFPND+
Sbjct: 993 SPDDYSYDGIKLDEAETWQLRLASSTTWPGMVLAICPYLDHYFLASAGNAFYVCGFPNDS 1052
Query: 1106 PRRVRRYAMGKTRFMITSLTAHFTRIAVGDCRDGILFFSYHEEGKKLEQLYCDPSVRLVA 1165
P R++R+A+G+TRFMITSL +FTRI VGDCRDG+LF+SYHEE KKL Q+YCDP+ RLVA
Sbjct: 1053 PERMKRFAVGRTRFMITSLRTYFTRIVVGDCRDGVLFYSYHEESKKLHQIYCDPAQRLVA 1112
Query: 1166 DCILMDDNTAVVSDRKGSIAVLS-SDHLE-----------DN---ASPECNLTLSCAYFM 1210
DC LMD N+ VSDRKGSIA+LS DH + DN +SPE NL L+CAY+M
Sbjct: 1113 DCFLMDANSVAVSDRKGSIAILSCKDHSDFGMKHLVKIPHDNPEYSSPESNLNLNCAYYM 1172
Query: 1211 AEVAMSIRKGSYSYRLPPAYDVLP--GDNGPGDTLRNTIIASTLLGSIMIFIPLSREEYE 1268
E+AMSI+KG Y+L PA DVL G + DT +TIIA TLLGSI +F P+S EEYE
Sbjct: 1173 GEIAMSIKKGCNIYKL-PADDVLRSYGLSKSIDTADDTIIAGTLLGSIFVFAPISSEEYE 1231
Query: 1269 LLEALQARLVLHHLTAPVLGNDHNEFRSRENPVGVPKILDGDMLTQFLELTSMQQNTILS 1328
LLE +QA+L +H LTAPVLGNDHNEFR RENP KILDGDML QFLELT+ QQ ++LS
Sbjct: 1232 LLEGVQAKLGIHPLTAPVLGNDHNEFRGRENPSQARKILDGDMLAQFLELTNRQQESVLS 1291
Query: 1329 S 1329
+
Sbjct: 1292 T 1292
>AT4G05420.2 | Symbols: DDB1A | damaged DNA binding protein 1A |
chr4:2746288-2752663 FORWARD LENGTH=1067
Length = 1067
Score = 112 bits (281), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 130/596 (21%), Positives = 253/596 (42%), Gaps = 112/596 (18%)
Query: 421 NALLWVEGGYLAAFVDMADGMVLKLK---DGRLCYTNPIQ---NIAPILDVAVVDYHDEK 474
NA+++V Y D ++KL D + Y ++ N+ PI+D VVD +
Sbjct: 290 NAVVFVGSSY-------GDSQLVKLNLHPDAKGSYVEVLERYINLGPIVDFCVVDLERQG 342
Query: 475 HDQMVACCGVAPEGSLRIIQSGINAEKLLRTPSIYEGISGTWTVRMKVTDSYHSFLVLSF 534
Q+V C G +GSLR++++GI + + +GI G W+++ + +++ +FLV+SF
Sbjct: 343 QGQVVTCSGAFKDGSLRVVRNGIGINE--QASVELQGIKGMWSLKSSIDEAFDTFLVVSF 400
Query: 535 LAETRILSVGL-SFTDVTDSVGFQPNVCTLACGLVSDGLLVQICQSSVKLCLPTKAAHSE 593
++ETRIL++ L + T+ GF V TL C LVQ+ +SV+L T
Sbjct: 401 ISETRILAMNLEDELEETEIEGFLSQVQTLFCHDAVYNQLVQVTSNSVRLVSST------ 454
Query: 594 GIPLSSPICTSW-SPNNLNISLGVVGHGFIVVSTSNPCFLFILGVRLLSTYQYEIYEMQH 652
+ + W +P +++ ++++T ++ L ++ E+QH
Sbjct: 455 ----TRELRDEWHAPAGFTVNVATANASQVLLATGGGHLVY------LEIGDGKLTEVQH 504
Query: 653 LGLLNELSCISI-PTQKNEKTESNSTISANNSCIPSFLSGVDVNKTFVIGTHRPSVEIWS 711
L E+SC+ I P N P++ + +V +W+
Sbjct: 505 ALLEYEVSCLDINPIGDN----------------PNY-------------SQLAAVGMWT 535
Query: 712 FAPDGGVKVVACGTISLTNTTGTAIDFCVPQDVRL-VFVDKYYVLAGLRNGMLLRFEWPA 770
D V++ + ++L + +P+ V L F Y+L L +G LL F+
Sbjct: 536 ---DISVRIFSLPELTLITKEQLGGEI-IPRSVLLCAFEGISYLLCALGDGHLLNFQ--- 588
Query: 771 EPSPTSPINVVDTALSSINLVNSATTAFEKRNDLPSTLQLIAIRRIGVTPVFLVPLNDTL 830
+++ T + R + +G P+ L +
Sbjct: 589 --------------------MDTTTGQLKDRKKVS----------LGTQPITLRTFSSKS 618
Query: 831 DADIIALSDRPWLLHSARHSLSYTSISFQPSSHVTPVCSLECPRGILFVAEDSLHLVEMV 890
+ A SDRP +++S+ L Y++++ + SH+ P S P + E L + +
Sbjct: 619 ATHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAREGELTIGTID 678
Query: 891 HSKRLNMWKFNLEGTPRKVLYHNESRMLLVMRTELDCGTCLSDISCV---DPLSWSVVSS 947
++L++ L R++ + ++R + + S++ V D ++ +S+
Sbjct: 679 DIQKLHIRTIPLGEHARRICHQEQTRTFGICSLGNQSNSEESEMHFVRLLDDQTFEFMST 738
Query: 948 FRLEPGETGKSMELVRFGSEQVLV--VGTSMSSGPAIMPSGEAESAKGRLLVLCLD 1001
+ L+ E G S+ F ++ + VGT+ ++P E E KGR+LV ++
Sbjct: 739 YPLDSFEYGCSILSCSFTEDKNVYYCVGTAY-----VLPE-ENEPTKGRILVFIVE 788
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 83/202 (41%), Gaps = 15/202 (7%)
Query: 1131 IAVGDCRDGILFFSYHEEGKKLEQLYCDPSVRLVADCILMDDNTAVVSDRKGSIAVLSSD 1190
I VGD I Y E +E+ D + ++ ++DD+ + ++ ++ + +
Sbjct: 859 IVVGDLMKSISLLLYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLLTVKKN 918
Query: 1191 HLEDNASPECNLTLSCAYFMAEVAMSIRKGSYSYRLPPAYDVLPGDNGPGDTLRNTIIAS 1250
L + Y + E R GS RLP D+ G T+I
Sbjct: 919 SEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLP--------DSEIGQI--PTVIFG 968
Query: 1251 TLLGSIMIFIPLSREEYELLEALQARLVLHHLTAPVLGNDHNEFRSRENPVGVPK---IL 1307
T+ G I + L +E+Y LE LQ+ L + V G H ++RS N + L
Sbjct: 969 TVNGVIGVIASLPQEQYTFLEKLQSS--LRKVIKGVGGLSHEQWRSFNNEKRTAEARNFL 1026
Query: 1308 DGDMLTQFLELTSMQQNTILSS 1329
DGD++ FL+L+ + I S
Sbjct: 1027 DGDLIESFLDLSRNKMEDISKS 1048
>AT4G05420.1 | Symbols: DDB1A | damaged DNA binding protein 1A |
chr4:2746288-2752663 FORWARD LENGTH=1088
Length = 1088
Score = 112 bits (280), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 130/596 (21%), Positives = 253/596 (42%), Gaps = 112/596 (18%)
Query: 421 NALLWVEGGYLAAFVDMADGMVLKLK---DGRLCYTNPIQ---NIAPILDVAVVDYHDEK 474
NA+++V Y D ++KL D + Y ++ N+ PI+D VVD +
Sbjct: 311 NAVVFVGSSY-------GDSQLVKLNLHPDAKGSYVEVLERYINLGPIVDFCVVDLERQG 363
Query: 475 HDQMVACCGVAPEGSLRIIQSGINAEKLLRTPSIYEGISGTWTVRMKVTDSYHSFLVLSF 534
Q+V C G +GSLR++++GI + + +GI G W+++ + +++ +FLV+SF
Sbjct: 364 QGQVVTCSGAFKDGSLRVVRNGIGINE--QASVELQGIKGMWSLKSSIDEAFDTFLVVSF 421
Query: 535 LAETRILSVGL-SFTDVTDSVGFQPNVCTLACGLVSDGLLVQICQSSVKLCLPTKAAHSE 593
++ETRIL++ L + T+ GF V TL C LVQ+ +SV+L T
Sbjct: 422 ISETRILAMNLEDELEETEIEGFLSQVQTLFCHDAVYNQLVQVTSNSVRLVSST------ 475
Query: 594 GIPLSSPICTSW-SPNNLNISLGVVGHGFIVVSTSNPCFLFILGVRLLSTYQYEIYEMQH 652
+ + W +P +++ ++++T ++ L ++ E+QH
Sbjct: 476 ----TRELRDEWHAPAGFTVNVATANASQVLLATGGGHLVY------LEIGDGKLTEVQH 525
Query: 653 LGLLNELSCISI-PTQKNEKTESNSTISANNSCIPSFLSGVDVNKTFVIGTHRPSVEIWS 711
L E+SC+ I P N P++ + +V +W+
Sbjct: 526 ALLEYEVSCLDINPIGDN----------------PNY-------------SQLAAVGMWT 556
Query: 712 FAPDGGVKVVACGTISLTNTTGTAIDFCVPQDVRL-VFVDKYYVLAGLRNGMLLRFEWPA 770
D V++ + ++L + +P+ V L F Y+L L +G LL F+
Sbjct: 557 ---DISVRIFSLPELTLITKEQLGGEI-IPRSVLLCAFEGISYLLCALGDGHLLNFQ--- 609
Query: 771 EPSPTSPINVVDTALSSINLVNSATTAFEKRNDLPSTLQLIAIRRIGVTPVFLVPLNDTL 830
+++ T + R + +G P+ L +
Sbjct: 610 --------------------MDTTTGQLKDRKKVS----------LGTQPITLRTFSSKS 639
Query: 831 DADIIALSDRPWLLHSARHSLSYTSISFQPSSHVTPVCSLECPRGILFVAEDSLHLVEMV 890
+ A SDRP +++S+ L Y++++ + SH+ P S P + E L + +
Sbjct: 640 ATHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAREGELTIGTID 699
Query: 891 HSKRLNMWKFNLEGTPRKVLYHNESRMLLVMRTELDCGTCLSDISCV---DPLSWSVVSS 947
++L++ L R++ + ++R + + S++ V D ++ +S+
Sbjct: 700 DIQKLHIRTIPLGEHARRICHQEQTRTFGICSLGNQSNSEESEMHFVRLLDDQTFEFMST 759
Query: 948 FRLEPGETGKSMELVRFGSEQVLV--VGTSMSSGPAIMPSGEAESAKGRLLVLCLD 1001
+ L+ E G S+ F ++ + VGT+ ++P E E KGR+LV ++
Sbjct: 760 YPLDSFEYGCSILSCSFTEDKNVYYCVGTAY-----VLPE-ENEPTKGRILVFIVE 809
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 83/202 (41%), Gaps = 15/202 (7%)
Query: 1131 IAVGDCRDGILFFSYHEEGKKLEQLYCDPSVRLVADCILMDDNTAVVSDRKGSIAVLSSD 1190
I VGD I Y E +E+ D + ++ ++DD+ + ++ ++ + +
Sbjct: 880 IVVGDLMKSISLLLYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLLTVKKN 939
Query: 1191 HLEDNASPECNLTLSCAYFMAEVAMSIRKGSYSYRLPPAYDVLPGDNGPGDTLRNTIIAS 1250
L + Y + E R GS RLP D+ G T+I
Sbjct: 940 SEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLP--------DSEIGQI--PTVIFG 989
Query: 1251 TLLGSIMIFIPLSREEYELLEALQARLVLHHLTAPVLGNDHNEFRSRENPVGVPK---IL 1307
T+ G I + L +E+Y LE LQ+ L + V G H ++RS N + L
Sbjct: 990 TVNGVIGVIASLPQEQYTFLEKLQSS--LRKVIKGVGGLSHEQWRSFNNEKRTAEARNFL 1047
Query: 1308 DGDMLTQFLELTSMQQNTILSS 1329
DGD++ FL+L+ + I S
Sbjct: 1048 DGDLIESFLDLSRNKMEDISKS 1069
>AT4G21100.1 | Symbols: DDB1B | damaged DNA binding protein 1B |
chr4:11258916-11265309 REVERSE LENGTH=1088
Length = 1088
Score = 111 bits (277), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 131/596 (21%), Positives = 251/596 (42%), Gaps = 112/596 (18%)
Query: 421 NALLWVEGGYLAAFVDMADGMVLKLK---DGRLCYTNPIQ---NIAPILDVAVVDYHDEK 474
NA+++V Y D ++KL D + Y ++ N+ PI+D VVD +
Sbjct: 311 NAVVFVGSSY-------GDSQLIKLNLQPDAKGSYVEILEKYVNLGPIVDFCVVDLERQG 363
Query: 475 HDQMVACCGVAPEGSLRIIQSGINAEKLLRTPSIYEGISGTWTVRMKVTDSYHSFLVLSF 534
Q+V C G +GSLRI+++GI + + +GI G W+++ + +++ +FLV+SF
Sbjct: 364 QGQVVTCSGAYKDGSLRIVRNGIGINE--QASVELQGIKGMWSLKSSIDEAFDTFLVVSF 421
Query: 535 LAETRILSVGL-SFTDVTDSVGFQPNVCTLACGLVSDGLLVQICQSSVKLCLPTKAAHSE 593
++ETRIL++ + + T+ GF V TL C LVQ+ +SV+L T
Sbjct: 422 ISETRILAMNIEDELEETEIEGFLSEVQTLFCHDAVYNQLVQVTSNSVRLVSST------ 475
Query: 594 GIPLSSPICTSW-SPNNLNISLGVVGHGFIVVSTSNPCFLFILGVRLLSTYQYEIYEMQH 652
+ + W +P ++++ ++++T ++ L + E++H
Sbjct: 476 ----TRELRNKWDAPAGFSVNVATANASQVLLATGGGHLVY------LEIGDGTLTEVKH 525
Query: 653 LGLLNELSCISI-PTQKNEKTESNSTISANNSCIPSFLSGVDVNKTFVIGTHRPSVEIWS 711
+ L E+SC+ I P N P++ + +V +W+
Sbjct: 526 VLLEYEVSCLDINPIGDN----------------PNY-------------SQLAAVGMWT 556
Query: 712 FAPDGGVKVVACGTISLTNTTGTAIDFCVPQDVRL-VFVDKYYVLAGLRNGMLLRFEWPA 770
D V++ ++L + +P+ V L F Y+L L +G LL F+
Sbjct: 557 ---DISVRIFVLPDLTLITKEELGGEI-IPRSVLLCAFEGISYLLCALGDGHLLNFQ--- 609
Query: 771 EPSPTSPINVVDTALSSINLVNSATTAFEKRNDLPSTLQLIAIRRIGVTPVFLVPLNDTL 830
+DT+ + + +G P+ L +
Sbjct: 610 ----------LDTSCGKLRDRKKVS--------------------LGTRPITLRTFSSKS 639
Query: 831 DADIIALSDRPWLLHSARHSLSYTSISFQPSSHVTPVCSLECPRGILFVAEDSLHLVEMV 890
+ A SDRP +++S L Y++++ + SH+ P S P + E L + +
Sbjct: 640 ATHVFAASDRPAVIYSNNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAREGELTIGTID 699
Query: 891 HSKRLNMWKFNLEGTPRKVLYHNESRMLLV--MRTELDCGTCLSD-ISCVDPLSWSVVSS 947
++L++ + R++ + ++R + +R E S + +D S+ +SS
Sbjct: 700 DIQKLHIRTIPIGEHARRICHQEQTRTFAISCLRNEPSAEESESHFVRLLDAQSFEFLSS 759
Query: 948 FRLEPGETGKSMELVRFGSEQ--VLVVGTSMSSGPAIMPSGEAESAKGRLLVLCLD 1001
+ L+ E G S+ F ++ VGT+ ++P E E KGR+LV ++
Sbjct: 760 YPLDAFECGCSILSCSFTDDKNVYYCVGTAY-----VLPE-ENEPTKGRILVFIVE 809
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 82/199 (41%), Gaps = 15/199 (7%)
Query: 1131 IAVGDCRDGILFFSYHEEGKKLEQLYCDPSVRLVADCILMDDNTAVVSDRKGSIAVLSSD 1190
IAVGD I Y E +E+ D + + +++D+ + +D +I + +
Sbjct: 880 IAVGDLMKSISLLIYKHEEGAIEERARDYNANWMTAVEILNDDIYLGTDNCFNIFTVKKN 939
Query: 1191 HLEDNASPECNLTLSCAYFMAEVAMSIRKGSYSYRLPPAYDVLPGDNGPGDTLRNTIIAS 1250
+ + + Y + E R GS +LP D+ G T+I
Sbjct: 940 NEGATDEERARMEVVGEYHIGEFVNRFRHGSLVMKLP--------DSDIGQI--PTVIFG 989
Query: 1251 TLLGSIMIFIPLSREEYELLEALQARLVLHHLTAPVLGNDHNEFRSRENPVGVPK---IL 1307
T+ G I + L +E+Y LE LQ L + V G H ++RS N + L
Sbjct: 990 TVSGMIGVIASLPQEQYAFLEKLQTS--LRKVIKGVGGLSHEQWRSFNNEKRTAEAKGYL 1047
Query: 1308 DGDMLTQFLELTSMQQNTI 1326
DGD++ FL+L+ + I
Sbjct: 1048 DGDLIESFLDLSRGKMEEI 1066
>AT3G55200.1 | Symbols: | Cleavage and polyadenylation specificity
factor (CPSF) A subunit protein | chr3:20460533-20464361
FORWARD LENGTH=1214
Length = 1214
Score = 98.2 bits (243), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 102/480 (21%), Positives = 198/480 (41%), Gaps = 79/480 (16%)
Query: 450 LCYTNPIQNIAPILDVAVVDYHDEKHDQMVACCGVAPEGSLRIIQSGINAEKLLRTPSIY 509
L + ++++ P++D+ V++ +E+ Q+ + CG P SLRI++ G+ ++ +
Sbjct: 393 LVRIDQVESLMPLMDMKVLNIFEEETPQIFSLCGRGPRSSLRILRPGLAITEMA-VSQLP 451
Query: 510 EGISGTWTVRMKVTDSYHSFLVLSFLAETRILSVGLSFTDVTDSVGFQPNVCTLACGLVS 569
S WTV+ V+D + +++V+SF T +LS+G +V DS GF +LA L+
Sbjct: 452 GQPSAVWTVKKNVSDEFDAYIVVSFTNATLVLSIGEQVEEVNDS-GFLDTTPSLAVSLIG 510
Query: 570 DGLLVQICQSSVKLCLPTKAAHSEGIPLSSPICTSWSPNNLNISLGVVGHGFIVVSTSNP 629
D L+Q+ + ++ + P I N L + + + G I
Sbjct: 511 DDSLMQVHPNGIRHIREDGRINEWRTPGKRSI-VKVGYNRLQVVIALSGGELI------- 562
Query: 630 CFLFILGVRLLSTYQYEIYEMQHLGLLNELSCISIPTQKNEKTESNSTISANNSC--IPS 687
+E G L E+ EK E +S + +C I
Sbjct: 563 -----------------YFEADMTGQLMEV----------EKHE----MSGDVACLDIAP 591
Query: 688 FLSGVDVNKTFVIGTHRPSVEIWSFAPDGGVKVVACGTISLTNTT--GTAIDFCVPQDVR 745
G ++ +G++ +V I S PD +++++ ++S + + + D
Sbjct: 592 VPEGRKRSRFLAVGSYDNTVRILSLDPDDCLQILSVQSVSSAPESLLFLEVQASIGGDDG 651
Query: 746 LVFVDKYYVLAGLRNGMLLRFEWPAEPSPTSPINVVDTALSSINLVNSATTAFEKRNDLP 805
++ +GL+NG+L R VVD ++ S
Sbjct: 652 ADHPANLFLNSGLQNGVLFR-------------TVVDMVTGQLSDSRS------------ 686
Query: 806 STLQLIAIRRIGVTPVFLVPLNDTLDADIIALSDRPWLLHSARHSLSYTSISFQPSSHVT 865
R +G+ P L ++ + ++ LS RPWL + R T +S++
Sbjct: 687 --------RFLGLKPPKLFSISVRGRSAMLCLSSRPWLGYIHRGHFHLTPLSYETLEFAA 738
Query: 866 PVCSLECPRGILFVAEDSLHLVEMVH-SKRLNMWKFNLEGTPRKVLYHNESRMLLVMRTE 924
P S +C G++ VA D+L + + + N L TPRK + H + ++L+++ ++
Sbjct: 739 PFSSDQCAEGVVSVAGDALRIFMIDRLGETFNETVVPLRYTPRKFVLHPKRKLLVIIESD 798
>AT3G55220.1 | Symbols: | Cleavage and polyadenylation specificity
factor (CPSF) A subunit protein | chr3:20467116-20470944
REVERSE LENGTH=1214
Length = 1214
Score = 98.2 bits (243), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 102/480 (21%), Positives = 198/480 (41%), Gaps = 79/480 (16%)
Query: 450 LCYTNPIQNIAPILDVAVVDYHDEKHDQMVACCGVAPEGSLRIIQSGINAEKLLRTPSIY 509
L + ++++ P++D+ V++ +E+ Q+ + CG P SLRI++ G+ ++ +
Sbjct: 393 LVRIDQVESLMPLMDMKVLNIFEEETPQIFSLCGRGPRSSLRILRPGLAITEMA-VSQLP 451
Query: 510 EGISGTWTVRMKVTDSYHSFLVLSFLAETRILSVGLSFTDVTDSVGFQPNVCTLACGLVS 569
S WTV+ V+D + +++V+SF T +LS+G +V DS GF +LA L+
Sbjct: 452 GQPSAVWTVKKNVSDEFDAYIVVSFTNATLVLSIGEQVEEVNDS-GFLDTTPSLAVSLIG 510
Query: 570 DGLLVQICQSSVKLCLPTKAAHSEGIPLSSPICTSWSPNNLNISLGVVGHGFIVVSTSNP 629
D L+Q+ + ++ + P I N L + + + G I
Sbjct: 511 DDSLMQVHPNGIRHIREDGRINEWRTPGKRSI-VKVGYNRLQVVIALSGGELI------- 562
Query: 630 CFLFILGVRLLSTYQYEIYEMQHLGLLNELSCISIPTQKNEKTESNSTISANNSC--IPS 687
+E G L E+ EK E +S + +C I
Sbjct: 563 -----------------YFEADMTGQLMEV----------EKHE----MSGDVACLDIAP 591
Query: 688 FLSGVDVNKTFVIGTHRPSVEIWSFAPDGGVKVVACGTISLTNTT--GTAIDFCVPQDVR 745
G ++ +G++ +V I S PD +++++ ++S + + + D
Sbjct: 592 VPEGRKRSRFLAVGSYDNTVRILSLDPDDCLQILSVQSVSSAPESLLFLEVQASIGGDDG 651
Query: 746 LVFVDKYYVLAGLRNGMLLRFEWPAEPSPTSPINVVDTALSSINLVNSATTAFEKRNDLP 805
++ +GL+NG+L R VVD ++ S
Sbjct: 652 ADHPANLFLNSGLQNGVLFR-------------TVVDMVTGQLSDSRS------------ 686
Query: 806 STLQLIAIRRIGVTPVFLVPLNDTLDADIIALSDRPWLLHSARHSLSYTSISFQPSSHVT 865
R +G+ P L ++ + ++ LS RPWL + R T +S++
Sbjct: 687 --------RFLGLKPPKLFSISVRGRSAMLCLSSRPWLGYIHRGHFHLTPLSYETLEFAA 738
Query: 866 PVCSLECPRGILFVAEDSLHLVEMVH-SKRLNMWKFNLEGTPRKVLYHNESRMLLVMRTE 924
P S +C G++ VA D+L + + + N L TPRK + H + ++L+++ ++
Sbjct: 739 PFSSDQCAEGVVSVAGDALRIFMIDRLGETFNETVVPLRYTPRKFVLHPKRKLLVIIESD 798