Miyakogusa Predicted Gene

Lj1g3v4763870.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4763870.1 Non Chatacterized Hit- tr|B8AWC4|B8AWC4_ORYSI
Putative uncharacterized protein OS=Oryza sativa
subsp,47.42,0.00000000000002,TRAF domain-like,TRAF-like; seg,NULL;
ZF_TRAF,Zinc finger, TRAF-type; TNF RECEPTOR ASSOCIATED
FACTOR,CUFF.33167.1
         (540 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G11950.2 | Symbols:  | TRAF-like superfamily protein | chr3:3...   480   e-135
AT3G11950.1 | Symbols:  | TRAF-like superfamily protein | chr3:3...   480   e-135

>AT3G11950.2 | Symbols:  | TRAF-like superfamily protein |
           chr3:3783273-3785098 REVERSE LENGTH=572
          Length = 572

 Score =  480 bits (1235), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 224/384 (58%), Positives = 289/384 (75%), Gaps = 17/384 (4%)

Query: 7   MDLPTIDVDLGPRKIEDEREGGPLFHCDLCDTEVVHKLAQMFLPGLASACVDNTSGDLFK 66
           MD P  D++     IED++EGGP FHCDL DT+VVHK+AQ+FLPGLA+ACVDNT+GD+F+
Sbjct: 1   MDPPVSDLE----SIEDQKEGGPSFHCDLYDTQVVHKIAQVFLPGLATACVDNTTGDIFR 56

Query: 67  TPGLVANDLRKEMIDYLTLRSESFVAESVILEGGPDGEESDHPFDIISNFVDDFVSLKRN 126
           +PG VA D+RKEMI+YLT RSE+FVAE ++L+GG + E S  PFDIIS+F+DDF + KRN
Sbjct: 57  SPGSVAADIRKEMIEYLTRRSETFVAEHIVLQGGSEIEASHDPFDIISDFIDDFATSKRN 116

Query: 127 LFSRVSGWLLSEKREDKIDDFVQEMEMKGFWTLDRRETIAETLLKNVDFENSFHCSMNFN 186
           LFSRVSGW+LSE+RED IDDF QEME+ GFW  D RE IA+TLLKNVDF++S HC M F 
Sbjct: 117 LFSRVSGWMLSERREDNIDDFAQEMEISGFWLTDHREGIAQTLLKNVDFKSSAHCEMKFQ 176

Query: 187 SKEELASHVTGCNFRTMICQNEGCNSRFCAGHLKKHDSTCPFKIIQCEQKCSDNIMRRDM 246
           ++ ELA H   C +RTM C+NEGC + FCA  ++ HDS CPFKII CEQ CS++IMRRDM
Sbjct: 177 TEGELAEHAMNCGYRTMNCENEGCTAVFCANQMENHDSVCPFKIIPCEQNCSESIMRRDM 236

Query: 247 DRHCITVCPMKLVNCPFFAVGCRSAVAQCMIEKHFSDDIRSHLWHLLKGIHKEASGEDLK 306
           DRHCITVCPMKLVNCPF +VGC S V QC +++H  D++ SHL ++L+ I+KEAS +DLK
Sbjct: 237 DRHCITVCPMKLVNCPFHSVGCLSDVHQCEVQQHHLDNVSSHLMYILRSIYKEASLDDLK 296

Query: 307 RRVDQIVEASSSSQLAKARDVRSLTFVVKDIEAKLGPLEVSVVEKNNAEISPKSDDDGED 366
            R +QI +   S++L++AR+ RSLT +VK+I+ KLGPL          EI PK   D E 
Sbjct: 297 PRAEQIQQL--STRLSEARNARSLTNLVKEIDGKLGPL----------EIKPKIVTDSE- 343

Query: 367 SDTNTNVTEQSTQASHITNSSDTA 390
           SD   N  +++ + + I    +T+
Sbjct: 344 SDKPENTEKKALEEAEIKEKPETS 367


>AT3G11950.1 | Symbols:  | TRAF-like superfamily protein |
           chr3:3783273-3785098 REVERSE LENGTH=572
          Length = 572

 Score =  480 bits (1235), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 224/384 (58%), Positives = 289/384 (75%), Gaps = 17/384 (4%)

Query: 7   MDLPTIDVDLGPRKIEDEREGGPLFHCDLCDTEVVHKLAQMFLPGLASACVDNTSGDLFK 66
           MD P  D++     IED++EGGP FHCDL DT+VVHK+AQ+FLPGLA+ACVDNT+GD+F+
Sbjct: 1   MDPPVSDLE----SIEDQKEGGPSFHCDLYDTQVVHKIAQVFLPGLATACVDNTTGDIFR 56

Query: 67  TPGLVANDLRKEMIDYLTLRSESFVAESVILEGGPDGEESDHPFDIISNFVDDFVSLKRN 126
           +PG VA D+RKEMI+YLT RSE+FVAE ++L+GG + E S  PFDIIS+F+DDF + KRN
Sbjct: 57  SPGSVAADIRKEMIEYLTRRSETFVAEHIVLQGGSEIEASHDPFDIISDFIDDFATSKRN 116

Query: 127 LFSRVSGWLLSEKREDKIDDFVQEMEMKGFWTLDRRETIAETLLKNVDFENSFHCSMNFN 186
           LFSRVSGW+LSE+RED IDDF QEME+ GFW  D RE IA+TLLKNVDF++S HC M F 
Sbjct: 117 LFSRVSGWMLSERREDNIDDFAQEMEISGFWLTDHREGIAQTLLKNVDFKSSAHCEMKFQ 176

Query: 187 SKEELASHVTGCNFRTMICQNEGCNSRFCAGHLKKHDSTCPFKIIQCEQKCSDNIMRRDM 246
           ++ ELA H   C +RTM C+NEGC + FCA  ++ HDS CPFKII CEQ CS++IMRRDM
Sbjct: 177 TEGELAEHAMNCGYRTMNCENEGCTAVFCANQMENHDSVCPFKIIPCEQNCSESIMRRDM 236

Query: 247 DRHCITVCPMKLVNCPFFAVGCRSAVAQCMIEKHFSDDIRSHLWHLLKGIHKEASGEDLK 306
           DRHCITVCPMKLVNCPF +VGC S V QC +++H  D++ SHL ++L+ I+KEAS +DLK
Sbjct: 237 DRHCITVCPMKLVNCPFHSVGCLSDVHQCEVQQHHLDNVSSHLMYILRSIYKEASLDDLK 296

Query: 307 RRVDQIVEASSSSQLAKARDVRSLTFVVKDIEAKLGPLEVSVVEKNNAEISPKSDDDGED 366
            R +QI +   S++L++AR+ RSLT +VK+I+ KLGPL          EI PK   D E 
Sbjct: 297 PRAEQIQQL--STRLSEARNARSLTNLVKEIDGKLGPL----------EIKPKIVTDSE- 343

Query: 367 SDTNTNVTEQSTQASHITNSSDTA 390
           SD   N  +++ + + I    +T+
Sbjct: 344 SDKPENTEKKALEEAEIKEKPETS 367