Miyakogusa Predicted Gene
- Lj1g3v4763860.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v4763860.1 tr|G7I359|G7I359_MEDTR Calcium homeostasis
endoplasmic reticulum protein OS=Medicago truncatula
GN=M,81.05,0,Suppressor-of-White-APricot splicing regulat,SWAP/Surp;
no description,RNA polymerase II, large subu,CUFF.33187.1
(689 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G31200.1 | Symbols: | SWAP (Suppressor-of-White-APricot)/sur... 429 e-120
AT4G31200.3 | Symbols: | SWAP (Suppressor-of-White-APricot)/sur... 429 e-120
AT4G31200.2 | Symbols: | SWAP (Suppressor-of-White-APricot)/sur... 429 e-120
>AT4G31200.1 | Symbols: | SWAP (Suppressor-of-White-APricot)/surp
RNA-binding domain-containing protein |
chr4:15162323-15164568 REVERSE LENGTH=650
Length = 650
Score = 429 bits (1104), Expect = e-120, Method: Compositional matrix adjust.
Identities = 234/445 (52%), Positives = 281/445 (63%), Gaps = 39/445 (8%)
Query: 245 FGLHGRPEYDQSSKSFKGLSGPLPSDVAMELSNVLGNLTGTKESIKSAKLWFMQRSPFAP 304
F H RP++DQS+ +F+GLSGPLP+DVAMEL+ VLGNL GTKESIKSAK+WFMQRSPFAP
Sbjct: 245 FAPHARPDFDQSTHAFRGLSGPLPADVAMELNGVLGNLNGTKESIKSAKIWFMQRSPFAP 304
Query: 305 ALAEALRERVFALDDVERQLHIIYLANDILFDSLNRRASTHDLDNEALAFKPVLGSMLAR 364
ALAEALR+RVFA+DD +RQ+HI+YLANDILFDSL RR + H+ DNEALAF+P+LGSML R
Sbjct: 305 ALAEALRDRVFAMDDSDRQMHIVYLANDILFDSLQRRTNLHEFDNEALAFRPILGSMLGR 364
Query: 365 IYHNPQSNEEYRKRLQQMVEFWSSKEVYEQETISLMKGEMIGGPQSTFPXXXXXXXXXXX 424
IYH PQ+ EE + RL+++++FW+SKEV++Q+TIS ++ EM GP +
Sbjct: 365 IYHFPQNKEENQSRLEKILQFWASKEVFDQDTISSLEKEMKSGPPANTFSHSPIIAAHAL 424
Query: 425 XXXXXXXQTPNHIGQQWLADRGGAGLSVLDQDRPDKHAILGQSMPASLAAQQFHLNSAPP 484
Q PN + +++ P +A QQF N PP
Sbjct: 425 QRPGMLQQPPN--------SNVSSTMNLEHLTNP-------------VATQQFIPNVMPP 463
Query: 485 SAFPGSMAIPSTAQPTNQPPGAHLLPPPSSNTSEQXXXXXXXXXXXXXGMVRKMQIGSGV 544
AFPGS+ + ++ P QPP E+ GMVRKMQIGSGV
Sbjct: 464 GAFPGSIPLNASVPPPTQPPAG-----------EKPPPYPLFPPGLIPGMVRKMQIGSGV 512
Query: 545 PYSPLSPLXXXXXXXXXXXXXXXXLQRVSKFFKEIGEVNPSEGPMNXXXXXXXXXXXXXX 604
PYSPLSPL L+RVSKFFKEIGEVNPSEGPM
Sbjct: 513 PYSPLSPLDIPTVIPPSDTPQSEVLERVSKFFKEIGEVNPSEGPMG----SESQDDYDNY 568
Query: 605 XXXTPARKGGACIPPPANLQVDPETGTYADGSVDRKPXXXXXXXXXXXATANPNEVSQYD 664
+P RKGGACIPPP NLQVDPETGTYADGS D+K ATA+PNE +QYD
Sbjct: 569 ERDSPQRKGGACIPPPPNLQVDPETGTYADGSTDKK---SGSGRLGLGATADPNEPTQYD 625
Query: 665 DVYTSYRKQRSTNYHSSMSARAITR 689
DVYTSYRK RSTNYH+SMSARA TR
Sbjct: 626 DVYTSYRKHRSTNYHTSMSARATTR 650
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 41/55 (74%), Positives = 48/55 (87%)
Query: 126 ELHKRIDKLVEYAVKNGPEFEAMICEKQRDNPAYGFLFGEEGHGYYRFKLWLSSH 180
EL KRIDKLVEY+VKNGPEFEAM+ ++Q+DNP Y FLFG EGHGYYR+K +LS H
Sbjct: 125 ELQKRIDKLVEYSVKNGPEFEAMMRDRQKDNPDYAFLFGGEGHGYYRYKHFLSMH 179
>AT4G31200.3 | Symbols: | SWAP (Suppressor-of-White-APricot)/surp
RNA-binding domain-containing protein |
chr4:15162323-15164568 REVERSE LENGTH=650
Length = 650
Score = 429 bits (1104), Expect = e-120, Method: Compositional matrix adjust.
Identities = 234/445 (52%), Positives = 281/445 (63%), Gaps = 39/445 (8%)
Query: 245 FGLHGRPEYDQSSKSFKGLSGPLPSDVAMELSNVLGNLTGTKESIKSAKLWFMQRSPFAP 304
F H RP++DQS+ +F+GLSGPLP+DVAMEL+ VLGNL GTKESIKSAK+WFMQRSPFAP
Sbjct: 245 FAPHARPDFDQSTHAFRGLSGPLPADVAMELNGVLGNLNGTKESIKSAKIWFMQRSPFAP 304
Query: 305 ALAEALRERVFALDDVERQLHIIYLANDILFDSLNRRASTHDLDNEALAFKPVLGSMLAR 364
ALAEALR+RVFA+DD +RQ+HI+YLANDILFDSL RR + H+ DNEALAF+P+LGSML R
Sbjct: 305 ALAEALRDRVFAMDDSDRQMHIVYLANDILFDSLQRRTNLHEFDNEALAFRPILGSMLGR 364
Query: 365 IYHNPQSNEEYRKRLQQMVEFWSSKEVYEQETISLMKGEMIGGPQSTFPXXXXXXXXXXX 424
IYH PQ+ EE + RL+++++FW+SKEV++Q+TIS ++ EM GP +
Sbjct: 365 IYHFPQNKEENQSRLEKILQFWASKEVFDQDTISSLEKEMKSGPPANTFSHSPIIAAHAL 424
Query: 425 XXXXXXXQTPNHIGQQWLADRGGAGLSVLDQDRPDKHAILGQSMPASLAAQQFHLNSAPP 484
Q PN + +++ P +A QQF N PP
Sbjct: 425 QRPGMLQQPPN--------SNVSSTMNLEHLTNP-------------VATQQFIPNVMPP 463
Query: 485 SAFPGSMAIPSTAQPTNQPPGAHLLPPPSSNTSEQXXXXXXXXXXXXXGMVRKMQIGSGV 544
AFPGS+ + ++ P QPP E+ GMVRKMQIGSGV
Sbjct: 464 GAFPGSIPLNASVPPPTQPPAG-----------EKPPPYPLFPPGLIPGMVRKMQIGSGV 512
Query: 545 PYSPLSPLXXXXXXXXXXXXXXXXLQRVSKFFKEIGEVNPSEGPMNXXXXXXXXXXXXXX 604
PYSPLSPL L+RVSKFFKEIGEVNPSEGPM
Sbjct: 513 PYSPLSPLDIPTVIPPSDTPQSEVLERVSKFFKEIGEVNPSEGPMG----SESQDDYDNY 568
Query: 605 XXXTPARKGGACIPPPANLQVDPETGTYADGSVDRKPXXXXXXXXXXXATANPNEVSQYD 664
+P RKGGACIPPP NLQVDPETGTYADGS D+K ATA+PNE +QYD
Sbjct: 569 ERDSPQRKGGACIPPPPNLQVDPETGTYADGSTDKK---SGSGRLGLGATADPNEPTQYD 625
Query: 665 DVYTSYRKQRSTNYHSSMSARAITR 689
DVYTSYRK RSTNYH+SMSARA TR
Sbjct: 626 DVYTSYRKHRSTNYHTSMSARATTR 650
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 41/55 (74%), Positives = 48/55 (87%)
Query: 126 ELHKRIDKLVEYAVKNGPEFEAMICEKQRDNPAYGFLFGEEGHGYYRFKLWLSSH 180
EL KRIDKLVEY+VKNGPEFEAM+ ++Q+DNP Y FLFG EGHGYYR+K +LS H
Sbjct: 125 ELQKRIDKLVEYSVKNGPEFEAMMRDRQKDNPDYAFLFGGEGHGYYRYKHFLSMH 179
>AT4G31200.2 | Symbols: | SWAP (Suppressor-of-White-APricot)/surp
RNA-binding domain-containing protein |
chr4:15162323-15164568 REVERSE LENGTH=650
Length = 650
Score = 429 bits (1104), Expect = e-120, Method: Compositional matrix adjust.
Identities = 234/445 (52%), Positives = 281/445 (63%), Gaps = 39/445 (8%)
Query: 245 FGLHGRPEYDQSSKSFKGLSGPLPSDVAMELSNVLGNLTGTKESIKSAKLWFMQRSPFAP 304
F H RP++DQS+ +F+GLSGPLP+DVAMEL+ VLGNL GTKESIKSAK+WFMQRSPFAP
Sbjct: 245 FAPHARPDFDQSTHAFRGLSGPLPADVAMELNGVLGNLNGTKESIKSAKIWFMQRSPFAP 304
Query: 305 ALAEALRERVFALDDVERQLHIIYLANDILFDSLNRRASTHDLDNEALAFKPVLGSMLAR 364
ALAEALR+RVFA+DD +RQ+HI+YLANDILFDSL RR + H+ DNEALAF+P+LGSML R
Sbjct: 305 ALAEALRDRVFAMDDSDRQMHIVYLANDILFDSLQRRTNLHEFDNEALAFRPILGSMLGR 364
Query: 365 IYHNPQSNEEYRKRLQQMVEFWSSKEVYEQETISLMKGEMIGGPQSTFPXXXXXXXXXXX 424
IYH PQ+ EE + RL+++++FW+SKEV++Q+TIS ++ EM GP +
Sbjct: 365 IYHFPQNKEENQSRLEKILQFWASKEVFDQDTISSLEKEMKSGPPANTFSHSPIIAAHAL 424
Query: 425 XXXXXXXQTPNHIGQQWLADRGGAGLSVLDQDRPDKHAILGQSMPASLAAQQFHLNSAPP 484
Q PN + +++ P +A QQF N PP
Sbjct: 425 QRPGMLQQPPN--------SNVSSTMNLEHLTNP-------------VATQQFIPNVMPP 463
Query: 485 SAFPGSMAIPSTAQPTNQPPGAHLLPPPSSNTSEQXXXXXXXXXXXXXGMVRKMQIGSGV 544
AFPGS+ + ++ P QPP E+ GMVRKMQIGSGV
Sbjct: 464 GAFPGSIPLNASVPPPTQPPAG-----------EKPPPYPLFPPGLIPGMVRKMQIGSGV 512
Query: 545 PYSPLSPLXXXXXXXXXXXXXXXXLQRVSKFFKEIGEVNPSEGPMNXXXXXXXXXXXXXX 604
PYSPLSPL L+RVSKFFKEIGEVNPSEGPM
Sbjct: 513 PYSPLSPLDIPTVIPPSDTPQSEVLERVSKFFKEIGEVNPSEGPMG----SESQDDYDNY 568
Query: 605 XXXTPARKGGACIPPPANLQVDPETGTYADGSVDRKPXXXXXXXXXXXATANPNEVSQYD 664
+P RKGGACIPPP NLQVDPETGTYADGS D+K ATA+PNE +QYD
Sbjct: 569 ERDSPQRKGGACIPPPPNLQVDPETGTYADGSTDKK---SGSGRLGLGATADPNEPTQYD 625
Query: 665 DVYTSYRKQRSTNYHSSMSARAITR 689
DVYTSYRK RSTNYH+SMSARA TR
Sbjct: 626 DVYTSYRKHRSTNYHTSMSARATTR 650
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 41/55 (74%), Positives = 48/55 (87%)
Query: 126 ELHKRIDKLVEYAVKNGPEFEAMICEKQRDNPAYGFLFGEEGHGYYRFKLWLSSH 180
EL KRIDKLVEY+VKNGPEFEAM+ ++Q+DNP Y FLFG EGHGYYR+K +LS H
Sbjct: 125 ELQKRIDKLVEYSVKNGPEFEAMMRDRQKDNPDYAFLFGGEGHGYYRYKHFLSMH 179