Miyakogusa Predicted Gene

Lj1g3v4763840.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4763840.1 Non Chatacterized Hit- tr|I1K5D3|I1K5D3_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.41618
PE,88.33,0,seg,NULL; EUKARYOTIC TRANSLATION INITATION FACTOR 3,
SUBUNIT 8 (EIF3S8)-RELATED,NULL; eIF-3c_N,Eukar,CUFF.33186.1
         (557 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G56150.2 | Symbols: EIF3C | eukaryotic translation initiation...   681   0.0  
AT3G56150.1 | Symbols: EIF3C, ATEIF3C-1, EIF3C-1, ATTIF3C1, TIF3...   681   0.0  
AT3G22860.1 | Symbols: TIF3C2, ATEIF3C-2, EIF3C-2, ATTIF3C2 | eu...   535   e-152

>AT3G56150.2 | Symbols: EIF3C | eukaryotic translation initiation
           factor 3C | chr3:20833790-20836820 REVERSE LENGTH=900
          Length = 900

 Score =  681 bits (1758), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/540 (65%), Positives = 398/540 (73%), Gaps = 9/540 (1%)

Query: 1   MAATVDQMKNAMKINDWVSLQESFDKINKQLEKVMRVTESEKVPKLYIKALVMLEDFLAQ 60
           M  TVDQMKNAMKINDWVSLQE+FDK+NKQLEKVMR+TE+ K P LYIK LVMLEDFL +
Sbjct: 63  MTYTVDQMKNAMKINDWVSLQENFDKVNKQLEKVMRITEAVKPPTLYIKTLVMLEDFLNE 122

Query: 61  ALXXXXXXXXXXXXXXXXXXXXXQKLKKNNKQYEEMITKQRXXXXXXXXXXXXXXXXXXX 120
           AL                     QKLKKNNK YE+ I K R                   
Sbjct: 123 ALANKEAKKKMSTSNSKALNSMKQKLKKNNKLYEDDINKYREAPEVEEEKQPEDDDDDDD 182

Query: 121 XXXXXXXPEQLRKREPQSDSEASQYDDEKQDDGDGPWDQKLSKKDRLLDRQFMKDPSEIT 180
                   +      P  D  +    DE  D+    W++ LSKKD+LL++   KDP EIT
Sbjct: 183 DDDEVEDDDDSSIDGPTVDPGSDV--DEPTDNL--TWEKMLSKKDKLLEKLMNKDPKEIT 238

Query: 181 WDTVNKKFKEVVAARGRKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVVSAQFDVNPGL 240
           WD VNKKFKE+VAARG+KGT RFE V+QLT LTK+AKTPAQKLEILFSV+SAQFDVNPGL
Sbjct: 239 WDWVNKKFKEIVAARGKKGTARFELVDQLTHLTKIAKTPAQKLEILFSVISAQFDVNPGL 298

Query: 241 NGHMPINVWKKCVHNMLIILDVLVQYPNIMVDDSVELDEAETQKGSDYDGPIRVWGNLVA 300
           +GHMPINVWKKCV NML ILD+LV+Y NI+VDD+VE DE ET K +DYDG IRVWGNLVA
Sbjct: 299 SGHMPINVWKKCVLNMLTILDILVKYSNIVVDDTVEPDENETSKPTDYDGKIRVWGNLVA 358

Query: 301 FLERIDAEFFKSLQCIDPHTREYVERLRDEPLFLVLAQNVQEYLERTGDFKAASKVALRR 360
           FLER+D EFFKSLQCIDPHTREYVERLRDEP+FL LAQN+Q+Y ER GDFKAA+KVALRR
Sbjct: 359 FLERVDTEFFKSLQCIDPHTREYVERLRDEPMFLALAQNIQDYFERMGDFKAAAKVALRR 418

Query: 361 VELVYYKPQGVYDAMRKLVXXXXXXXXXXXXXXSKGFEETRIPSAFVATPELVARKPTFH 420
           VE +YYKPQ VYDAMRKL                 G      P++F+  PE+V RKPTF 
Sbjct: 419 VEAIYYKPQEVYDAMRKLAELVEEEEETEEAKEESG-----PPTSFIVVPEVVPRKPTFP 473

Query: 421 EDSRSLMDALVSVIYKYGEERTKARAMLCDIYHHGLRDEFSIARDLLLMSHLQDNVQHMD 480
           E SR++MD LVS+IY+ G+ERTKARAMLCDI HH L D F  ARDLLLMSHLQDN+QHMD
Sbjct: 474 ESSRAMMDILVSLIYRNGDERTKARAMLCDINHHALMDNFVTARDLLLMSHLQDNIQHMD 533

Query: 481 ISTQILFNRAMSQLGLCAFRVGLISEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQ 540
           ISTQILFNR M+QLGLCAFR G+I+E+H CLSELYSG RV+ELLAQGVSQSRYHEKTPEQ
Sbjct: 534 ISTQILFNRTMAQLGLCAFRAGMITESHSCLSELYSGQRVRELLAQGVSQSRYHEKTPEQ 593


>AT3G56150.1 | Symbols: EIF3C, ATEIF3C-1, EIF3C-1, ATTIF3C1, TIF3C1
           | eukaryotic translation initiation factor 3C |
           chr3:20833790-20836820 REVERSE LENGTH=900
          Length = 900

 Score =  681 bits (1758), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/540 (65%), Positives = 398/540 (73%), Gaps = 9/540 (1%)

Query: 1   MAATVDQMKNAMKINDWVSLQESFDKINKQLEKVMRVTESEKVPKLYIKALVMLEDFLAQ 60
           M  TVDQMKNAMKINDWVSLQE+FDK+NKQLEKVMR+TE+ K P LYIK LVMLEDFL +
Sbjct: 63  MTYTVDQMKNAMKINDWVSLQENFDKVNKQLEKVMRITEAVKPPTLYIKTLVMLEDFLNE 122

Query: 61  ALXXXXXXXXXXXXXXXXXXXXXQKLKKNNKQYEEMITKQRXXXXXXXXXXXXXXXXXXX 120
           AL                     QKLKKNNK YE+ I K R                   
Sbjct: 123 ALANKEAKKKMSTSNSKALNSMKQKLKKNNKLYEDDINKYREAPEVEEEKQPEDDDDDDD 182

Query: 121 XXXXXXXPEQLRKREPQSDSEASQYDDEKQDDGDGPWDQKLSKKDRLLDRQFMKDPSEIT 180
                   +      P  D  +    DE  D+    W++ LSKKD+LL++   KDP EIT
Sbjct: 183 DDDEVEDDDDSSIDGPTVDPGSDV--DEPTDNL--TWEKMLSKKDKLLEKLMNKDPKEIT 238

Query: 181 WDTVNKKFKEVVAARGRKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVVSAQFDVNPGL 240
           WD VNKKFKE+VAARG+KGT RFE V+QLT LTK+AKTPAQKLEILFSV+SAQFDVNPGL
Sbjct: 239 WDWVNKKFKEIVAARGKKGTARFELVDQLTHLTKIAKTPAQKLEILFSVISAQFDVNPGL 298

Query: 241 NGHMPINVWKKCVHNMLIILDVLVQYPNIMVDDSVELDEAETQKGSDYDGPIRVWGNLVA 300
           +GHMPINVWKKCV NML ILD+LV+Y NI+VDD+VE DE ET K +DYDG IRVWGNLVA
Sbjct: 299 SGHMPINVWKKCVLNMLTILDILVKYSNIVVDDTVEPDENETSKPTDYDGKIRVWGNLVA 358

Query: 301 FLERIDAEFFKSLQCIDPHTREYVERLRDEPLFLVLAQNVQEYLERTGDFKAASKVALRR 360
           FLER+D EFFKSLQCIDPHTREYVERLRDEP+FL LAQN+Q+Y ER GDFKAA+KVALRR
Sbjct: 359 FLERVDTEFFKSLQCIDPHTREYVERLRDEPMFLALAQNIQDYFERMGDFKAAAKVALRR 418

Query: 361 VELVYYKPQGVYDAMRKLVXXXXXXXXXXXXXXSKGFEETRIPSAFVATPELVARKPTFH 420
           VE +YYKPQ VYDAMRKL                 G      P++F+  PE+V RKPTF 
Sbjct: 419 VEAIYYKPQEVYDAMRKLAELVEEEEETEEAKEESG-----PPTSFIVVPEVVPRKPTFP 473

Query: 421 EDSRSLMDALVSVIYKYGEERTKARAMLCDIYHHGLRDEFSIARDLLLMSHLQDNVQHMD 480
           E SR++MD LVS+IY+ G+ERTKARAMLCDI HH L D F  ARDLLLMSHLQDN+QHMD
Sbjct: 474 ESSRAMMDILVSLIYRNGDERTKARAMLCDINHHALMDNFVTARDLLLMSHLQDNIQHMD 533

Query: 481 ISTQILFNRAMSQLGLCAFRVGLISEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQ 540
           ISTQILFNR M+QLGLCAFR G+I+E+H CLSELYSG RV+ELLAQGVSQSRYHEKTPEQ
Sbjct: 534 ISTQILFNRTMAQLGLCAFRAGMITESHSCLSELYSGQRVRELLAQGVSQSRYHEKTPEQ 593


>AT3G22860.1 | Symbols: TIF3C2, ATEIF3C-2, EIF3C-2, ATTIF3C2 |
           eukaryotic translation initiation factor 3 subunit C2 |
           chr3:8090654-8093248 REVERSE LENGTH=805
          Length = 805

 Score =  535 bits (1378), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 296/552 (53%), Positives = 356/552 (64%), Gaps = 69/552 (12%)

Query: 1   MAATVDQMKNAMKINDWVSLQESFDKINKQLEKVMRVTESEKVPKLYIKALVMLEDFLAQ 60
           MA T++ MK+AM IND V LQE+F+K+NKQ+ K      S K P LYIK LVMLEDFL +
Sbjct: 63  MANTIENMKHAMNINDCVYLQETFEKLNKQISK------SVKTPTLYIKTLVMLEDFLNE 116

Query: 61  ALXXXXXXXXXXXXXXXXXXXXXQKLKKNNKQYEEMITKQRXXXXXXXXXXXXXXXXXXX 120
                                  QKLKKNN QY+E I + R                   
Sbjct: 117 --DNMKTKEKMSTSNSKALNAMRQKLKKNNLQYQEDIKRFR------------------- 155

Query: 121 XXXXXXXPEQLRKREPQSDSEASQYDDEKQDDGDG-PWDQKLSKKDRLLDRQFMKDPSEI 179
                          P+ + +    ++  +D  D   W+   S     LD +      EI
Sbjct: 156 -------------ESPEIEDDDEYEEEVVEDSADNVSWEMLFS-----LDHE------EI 191

Query: 180 TWDTVNKKFKEVVAARGRKGTGRF-------EQVEQLTFLTKVAKTPAQKLEILFSVVSA 232
           TW+ VNKKFKE+ AAR  K               ++   LTK+AKTPAQK+EILFSV+SA
Sbjct: 192 TWNMVNKKFKEIRAARWSKRRSSSLKLKPGETHAQKHMDLTKIAKTPAQKVEILFSVISA 251

Query: 233 QFDVNP-GLNGHMPINVWKKCVHNMLIILDVLVQYPNIMVDDSVELDEAETQKGSDYDGP 291
           +F+VN  GL+G+MPI+VWKKCV NML ILD+LV+Y NI+VDD+VE DE ET K + YDG 
Sbjct: 252 EFNVNSGGLSGYMPIDVWKKCVVNMLTILDILVKYYNIVVDDTVEPDEKETSKPAAYDGT 311

Query: 292 IRVWGNLVAFLERIDAEFFKSLQCIDPHTREYVERLRDEPLFLVLAQNVQEYLERTGDFK 351
           IRV GNLVAFLE+I+ EFFKSLQCIDPHT +YVERL+DEP+FL LAQ++Q+YLERTGD K
Sbjct: 312 IRVSGNLVAFLEKIETEFFKSLQCIDPHTNDYVERLKDEPMFLALAQSIQDYLERTGDSK 371

Query: 352 AASKVALRRVELVYYKPQGVYDAMRKLVXXXXXXXXXXXXXXSKGFEETRIPSAFVATPE 411
           AASKVA   VE +YYKPQ V+DAM KL               S         S+F+   E
Sbjct: 372 AASKVAFILVESIYYKPQEVFDAMSKLADEEIEEANEESGSSS---------SSFIVVAE 422

Query: 412 LVARKPTFHEDSRSLMDALVSVIYKYGEERTKARAMLCDIYHHGLRDEFSIARDLLLMSH 471
           +V RKPTF + SR++MD LVS IYK G+ERTKARAMLCDIY H L D F  ARDLLLMSH
Sbjct: 423 IVPRKPTFAKSSRAMMDTLVSFIYKNGDERTKARAMLCDIYQHALMDNFVTARDLLLMSH 482

Query: 472 LQDNVQHMDISTQILFNRAMSQLGLCAFRVGLISEAHGCLSELYSGGRVKELLAQGVSQS 531
           LQ+N+QHMDISTQILFNR M+QLGLCAFRVG+I+E+H CLSELYSG RV+ELL QGVSQS
Sbjct: 483 LQENIQHMDISTQILFNRTMAQLGLCAFRVGMITESHSCLSELYSGNRVRELLGQGVSQS 542

Query: 532 RYHEKTPEQVLF 543
           R HEKT EQ+L 
Sbjct: 543 RDHEKTTEQMLM 554