Miyakogusa Predicted Gene

Lj1g3v4763560.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4763560.1 Non Chatacterized Hit- tr|I1I6S1|I1I6S1_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,31.15,3e-17,SAM_2,Sterile alpha motif, type 2; no
description,Sterile alpha motif/pointed domain;
SAM_DOMAIN,Ste,CUFF.33147.1
         (258 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G11890.1 | Symbols:  | Sterile alpha motif (SAM) domain-conta...   112   2e-25
AT3G11890.2 | Symbols:  | Sterile alpha motif (SAM) domain-conta...   112   2e-25

>AT3G11890.1 | Symbols:  | Sterile alpha motif (SAM)
           domain-containing protein | chr3:3756026-3757609 FORWARD
           LENGTH=500
          Length = 500

 Score =  112 bits (281), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 56/104 (53%), Positives = 74/104 (71%), Gaps = 6/104 (5%)

Query: 155 KAIRQPRTLLAPRMSSNLVTLSHGLRASNLTRKLERAGGLSRWLTSLGL-EQFVRIFQGK 213
           K IR PR      M S++V  +  LR  NL +K+E+AGGL+ W+ S+GL  +F R+ +G+
Sbjct: 399 KPIRFPRV-----MCSSVVMDNEKLRVLNLEKKVEKAGGLNEWVGSIGLGREFERMLRGQ 453

Query: 214 RVSKYHLANLTMQKLKDMGASAVGPRRKLIHAIDCVCQPYCFEA 257
           R+SK+ +ANLTM+KLK MGA AVGPRRKLIHAI CV  P+C  A
Sbjct: 454 RMSKFQMANLTMEKLKQMGALAVGPRRKLIHAIGCVYHPHCLRA 497


>AT3G11890.2 | Symbols:  | Sterile alpha motif (SAM)
           domain-containing protein | chr3:3756026-3757609 FORWARD
           LENGTH=527
          Length = 527

 Score =  112 bits (281), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 56/104 (53%), Positives = 74/104 (71%), Gaps = 6/104 (5%)

Query: 155 KAIRQPRTLLAPRMSSNLVTLSHGLRASNLTRKLERAGGLSRWLTSLGL-EQFVRIFQGK 213
           K IR PR      M S++V  +  LR  NL +K+E+AGGL+ W+ S+GL  +F R+ +G+
Sbjct: 426 KPIRFPRV-----MCSSVVMDNEKLRVLNLEKKVEKAGGLNEWVGSIGLGREFERMLRGQ 480

Query: 214 RVSKYHLANLTMQKLKDMGASAVGPRRKLIHAIDCVCQPYCFEA 257
           R+SK+ +ANLTM+KLK MGA AVGPRRKLIHAI CV  P+C  A
Sbjct: 481 RMSKFQMANLTMEKLKQMGALAVGPRRKLIHAIGCVYHPHCLRA 524