Miyakogusa Predicted Gene

Lj1g3v4752960.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4752960.1 Non Chatacterized Hit- tr|I1NAW2|I1NAW2_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,38.85,2e-18,seg,NULL,CUFF.33115.1
         (200 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G35900.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   117   4e-27

>AT2G35900.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: nucleus;
           EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13
           growth stages; Has 32 Blast hits to 32 proteins in 12
           species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
           0; Plants - 32; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr2:15070203-15071540 REVERSE
           LENGTH=192
          Length = 192

 Score =  117 bits (294), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 65/167 (38%), Positives = 90/167 (53%), Gaps = 19/167 (11%)

Query: 41  IVRSQCRTEQVESGKFIRKCEKTEELIRICVGRPVEVLQSNNEYXXXXXXXXXXKXXXXX 100
           +VRSQC+TE+VE GKF+RKC+KTEE++R C G+P EV+QSN E+                
Sbjct: 38  VVRSQCKTEEVEPGKFVRKCDKTEEILRHCFGKPSEVVQSNTEH----TEEDVTDQMVGR 93

Query: 101 XXXXXXXXXXHVFDFPGLRSDIEVMERSLFGGVSRFFDAAEEMKNGFFDVFGNVLDAESP 160
                     +  +FPGLR D++ +ER    G+  FFDAAEEM +  FD+ G+       
Sbjct: 94  SALPNQFEDKNPLNFPGLRRDVDAIERHFLSGMKSFFDAAEEMTSSLFDIMGDH------ 147

Query: 161 SSSSMRRGIPIEEY-------NRQEASPKPQEKEPVDTDFAALAKDV 200
             S+ R GIPIE +       N + A  +P     +  D + LAKDV
Sbjct: 148 HPSTRRGGIPIENHPKVEEHRNDETAPTRPHSSGEI--DLSGLAKDV 192