Miyakogusa Predicted Gene
- Lj1g3v4752940.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v4752940.2 Non Chatacterized Hit- tr|D8T3B2|D8T3B2_SELML
Putative uncharacterized protein OS=Selaginella moelle,40.98,2e-18,no
description,START-like domain; Bet v1-like,NULL; seg,NULL,CUFF.33129.2
(602 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G06440.3 | Symbols: | BEST Arabidopsis thaliana protein matc... 355 5e-98
AT5G06440.2 | Symbols: | BEST Arabidopsis thaliana protein matc... 355 5e-98
AT5G06440.4 | Symbols: | FUNCTIONS IN: molecular_function unkno... 344 1e-94
AT3G11720.2 | Symbols: | Polyketide cyclase/dehydrase and lipid... 310 2e-84
AT3G11720.1 | Symbols: | Polyketide cyclase/dehydrase and lipid... 310 2e-84
AT3G11720.3 | Symbols: | Polyketide cyclase/dehydrase and lipid... 309 3e-84
AT5G06440.1 | Symbols: | BEST Arabidopsis thaliana protein matc... 305 5e-83
>AT5G06440.3 | Symbols: | BEST Arabidopsis thaliana protein match
is: Polyketide cyclase/dehydrase and lipid transport
superfamily protein (TAIR:AT3G11720.3); Has 157 Blast
hits to 155 proteins in 41 species: Archae - 0; Bacteria
- 6; Metazoa - 5; Fungi - 6; Plants - 99; Viruses - 0;
Other Eukaryotes - 41 (source: NCBI BLink). |
chr5:1964641-1966807 REVERSE LENGTH=479
Length = 479
Score = 355 bits (911), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 170/339 (50%), Positives = 243/339 (71%), Gaps = 19/339 (5%)
Query: 1 MAKKRHIVQYRERLDRTLASPDLTNGEMLKTLVKSQLLRSSQFEIEGYEDKFVETKTAEI 60
M KKR I YR++LD+TL+SP+LTN E LK+L+++QL E ++ ++ +T ++
Sbjct: 1 MQKKREICGYRDKLDKTLSSPELTNHETLKSLLRNQL--------EECDENILDKRTDDV 52
Query: 61 TNFLDMI-SASVDNSGGSSISH-TDWKLKQDNEDYRVMYREGPEGTPFHTLMVEGYIDGP 118
+ L + S S+ + S +++ DWKLK D ED RVMYREG +G+PFHTL+VEGY+DGP
Sbjct: 53 SKLLSKLRSVSMTDHQVSKLTNDGDWKLKHDLEDCRVMYREGLDGSPFHTLLVEGYMDGP 112
Query: 119 VDVCLCLSWEAPLYKKWWPQFTVPPFKVLAADCLQKVQIGEQISLVRMKVPWPLSKREAI 178
+ CLC+SWE+ LYKKWWPQ+ PPF++L + CLQKV +GEQI L RMKVPWPL++RE I
Sbjct: 113 IHECLCVSWESTLYKKWWPQYAFPPFRILKSTCLQKVGVGEQICLARMKVPWPLTEREMI 172
Query: 179 VHYYLVEYFQEDLTIVLIKSVSESESMDGAIDGINRDAIPEAKDVVRIDFVGGYVLQKVT 238
+HY+ EYF++ L ++L+ ++S+ S+ + I IPE+ D VR+D VGG+VLQKVT
Sbjct: 173 LHYFSFEYFKDGLVVILLNTISDLNSIGVSSTDI---IIPESPDAVRMDLVGGFVLQKVT 229
Query: 239 SERSYFRTMANLDIKLDFVPPTLINFISRQLIGSGFRLYQKAVSSMMNNDKEIIKTLGDS 298
+RSYFRT+ ++DIKLD +PP+L+NFISRQLIG+GFRLY+K+V+S+ D++ + L D
Sbjct: 230 PQRSYFRTIGDMDIKLDLMPPSLMNFISRQLIGNGFRLYKKSVASVAKFDEDYSRALTDP 289
Query: 299 LYVGIREALYNTSGS----NAMDGEELNIVSSILPAEEH 333
LY IR ALY+T + ++ E+N V+ LP EH
Sbjct: 290 LYTKIRRALYSTDEAVEEEPKLETNEVNGVT--LPKHEH 326
>AT5G06440.2 | Symbols: | BEST Arabidopsis thaliana protein match
is: Polyketide cyclase/dehydrase and lipid transport
superfamily protein (TAIR:AT3G11720.3); Has 157 Blast
hits to 155 proteins in 41 species: Archae - 0; Bacteria
- 6; Metazoa - 5; Fungi - 6; Plants - 99; Viruses - 0;
Other Eukaryotes - 41 (source: NCBI BLink). |
chr5:1964641-1966807 REVERSE LENGTH=479
Length = 479
Score = 355 bits (911), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 170/339 (50%), Positives = 243/339 (71%), Gaps = 19/339 (5%)
Query: 1 MAKKRHIVQYRERLDRTLASPDLTNGEMLKTLVKSQLLRSSQFEIEGYEDKFVETKTAEI 60
M KKR I YR++LD+TL+SP+LTN E LK+L+++QL E ++ ++ +T ++
Sbjct: 1 MQKKREICGYRDKLDKTLSSPELTNHETLKSLLRNQL--------EECDENILDKRTDDV 52
Query: 61 TNFLDMI-SASVDNSGGSSISH-TDWKLKQDNEDYRVMYREGPEGTPFHTLMVEGYIDGP 118
+ L + S S+ + S +++ DWKLK D ED RVMYREG +G+PFHTL+VEGY+DGP
Sbjct: 53 SKLLSKLRSVSMTDHQVSKLTNDGDWKLKHDLEDCRVMYREGLDGSPFHTLLVEGYMDGP 112
Query: 119 VDVCLCLSWEAPLYKKWWPQFTVPPFKVLAADCLQKVQIGEQISLVRMKVPWPLSKREAI 178
+ CLC+SWE+ LYKKWWPQ+ PPF++L + CLQKV +GEQI L RMKVPWPL++RE I
Sbjct: 113 IHECLCVSWESTLYKKWWPQYAFPPFRILKSTCLQKVGVGEQICLARMKVPWPLTEREMI 172
Query: 179 VHYYLVEYFQEDLTIVLIKSVSESESMDGAIDGINRDAIPEAKDVVRIDFVGGYVLQKVT 238
+HY+ EYF++ L ++L+ ++S+ S+ + I IPE+ D VR+D VGG+VLQKVT
Sbjct: 173 LHYFSFEYFKDGLVVILLNTISDLNSIGVSSTDI---IIPESPDAVRMDLVGGFVLQKVT 229
Query: 239 SERSYFRTMANLDIKLDFVPPTLINFISRQLIGSGFRLYQKAVSSMMNNDKEIIKTLGDS 298
+RSYFRT+ ++DIKLD +PP+L+NFISRQLIG+GFRLY+K+V+S+ D++ + L D
Sbjct: 230 PQRSYFRTIGDMDIKLDLMPPSLMNFISRQLIGNGFRLYKKSVASVAKFDEDYSRALTDP 289
Query: 299 LYVGIREALYNTSGS----NAMDGEELNIVSSILPAEEH 333
LY IR ALY+T + ++ E+N V+ LP EH
Sbjct: 290 LYTKIRRALYSTDEAVEEEPKLETNEVNGVT--LPKHEH 326
>AT5G06440.4 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 12 growth stages; BEST Arabidopsis
thaliana protein match is: Polyketide cyclase/dehydrase
and lipid transport superfamily protein
(TAIR:AT3G11720.3). | chr5:1964641-1966807 REVERSE
LENGTH=486
Length = 486
Score = 344 bits (882), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 168/346 (48%), Positives = 242/346 (69%), Gaps = 26/346 (7%)
Query: 1 MAKKRHIVQYRERLDRTLASPDLTNGEMLKTLVKSQLLRSSQFEIEGYEDKFVETKTAEI 60
M KKR I YR++LD+TL+SP+LTN E LK+L+++QL E ++ ++ +T ++
Sbjct: 1 MQKKREICGYRDKLDKTLSSPELTNHETLKSLLRNQL--------EECDENILDKRTDDV 52
Query: 61 TNFLDMI-SASVDNSGGSSISHT-DWKLKQDNEDYRVMYREGPEGTPFHTLMVEGYIDGP 118
+ L + S S+ + S +++ DWKLK D ED RVMYREG +G+PFHTL+VEGY+DGP
Sbjct: 53 SKLLSKLRSVSMTDHQVSKLTNDGDWKLKHDLEDCRVMYREGLDGSPFHTLLVEGYMDGP 112
Query: 119 VDVCLCLSWEAPLYKKWWPQFTVPPFKVLAADCLQKVQIGEQISLVRM-------KVPWP 171
+ CLC+SWE+ LYKKWWPQ+ PPF++L + CLQKV +GEQI L R +VPWP
Sbjct: 113 IHECLCVSWESTLYKKWWPQYAFPPFRILKSTCLQKVGVGEQICLARFVHIENKDEVPWP 172
Query: 172 LSKREAIVHYYLVEYFQEDLTIVLIKSVSESESMDGAIDGINRDAIPEAKDVVRIDFVGG 231
L++RE I+HY+ EYF++ L ++L+ ++S+ S+ + I IPE+ D VR+D VGG
Sbjct: 173 LTEREMILHYFSFEYFKDGLVVILLNTISDLNSIGVSSTDI---IIPESPDAVRMDLVGG 229
Query: 232 YVLQKVTSERSYFRTMANLDIKLDFVPPTLINFISRQLIGSGFRLYQKAVSSMMNNDKEI 291
+VLQKVT +RSYFRT+ ++DIKLD +PP+L+NFISRQLIG+GFRLY+K+V+S+ D++
Sbjct: 230 FVLQKVTPQRSYFRTIGDMDIKLDLMPPSLMNFISRQLIGNGFRLYKKSVASVAKFDEDY 289
Query: 292 IKTLGDSLYVGIREALYNTSGS----NAMDGEELNIVSSILPAEEH 333
+ L D LY IR ALY+T + ++ E+N V+ LP EH
Sbjct: 290 SRALTDPLYTKIRRALYSTDEAVEEEPKLETNEVNGVT--LPKHEH 333
>AT3G11720.2 | Symbols: | Polyketide cyclase/dehydrase and lipid
transport superfamily protein | chr3:3705991-3708310
REVERSE LENGTH=542
Length = 542
Score = 310 bits (795), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 151/317 (47%), Positives = 216/317 (68%), Gaps = 17/317 (5%)
Query: 1 MAKKRHIVQYRERLDRTLASPDLTNGEMLKTLVKSQLLRSSQFEIEGYEDKFVETKTAEI 60
M KKR + +YRERL+ TL+SP+L N + LKTLV+ QL +I D+ V ++ I
Sbjct: 1 MEKKRDVSEYRERLNETLSSPELINEQTLKTLVRKQLNEECSVDIL---DQRVAALSSTI 57
Query: 61 TNFLDMISASVDNSGGSS-ISHTDWKLKQDNEDYRVMYREGPEGTPFHTLMVEGYIDGPV 119
+ + D S S+ S+ DWK+K D++D RVMYREG +G+PFHTL+VEG DG +
Sbjct: 58 EKLRSVSTKDQDLSKSSTEASYGDWKVKHDDKDCRVMYREGLKGSPFHTLLVEGCTDGTI 117
Query: 120 DVCLCLSWEAPLYKKWWPQFTVPPFKVLAADCLQKVQIGEQISLVRMKVPWPLSKREAIV 179
+ CLC+ WE+ Y+KWWP+ T P F+VL A CLQK +I EQI L+R+K PWPL+ REA++
Sbjct: 118 EDCLCVCWESSFYEKWWPKLTFPSFRVLEAKCLQKFRIDEQICLLRVKAPWPLTDREAVL 177
Query: 180 HYYLVEYFQEDLTIVLIKSVSESESMDGAIDGINRDAIPEAKDVVRIDFVGGYVLQKVTS 239
+++ EYF++DL I+L+ S+ E ES G++ +N VRIDFVGG +QKVT
Sbjct: 178 QFFVFEYFKDDLVIILLNSI-EVES--GSVAEVN---------AVRIDFVGGVAIQKVTP 225
Query: 240 ERSYFRTMANLDIKLDFVPPTLINFISRQLIGSGFRLYQKAVSSMMNNDKEIIKTLGDSL 299
E+SY R +A +DIKLD VPP+LINF+SRQL+G+GF+L++K + S+ +D + L D L
Sbjct: 226 EKSYIRFIAEVDIKLDLVPPSLINFMSRQLLGNGFKLFKKTIGSVAESD-DYKTVLADPL 284
Query: 300 YVGIREALYNTSGSNAM 316
Y IREALY++ ++ +
Sbjct: 285 YTHIREALYSSDKTDEI 301
>AT3G11720.1 | Symbols: | Polyketide cyclase/dehydrase and lipid
transport superfamily protein | chr3:3705991-3708310
REVERSE LENGTH=542
Length = 542
Score = 310 bits (795), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 151/317 (47%), Positives = 216/317 (68%), Gaps = 17/317 (5%)
Query: 1 MAKKRHIVQYRERLDRTLASPDLTNGEMLKTLVKSQLLRSSQFEIEGYEDKFVETKTAEI 60
M KKR + +YRERL+ TL+SP+L N + LKTLV+ QL +I D+ V ++ I
Sbjct: 1 MEKKRDVSEYRERLNETLSSPELINEQTLKTLVRKQLNEECSVDIL---DQRVAALSSTI 57
Query: 61 TNFLDMISASVDNSGGSS-ISHTDWKLKQDNEDYRVMYREGPEGTPFHTLMVEGYIDGPV 119
+ + D S S+ S+ DWK+K D++D RVMYREG +G+PFHTL+VEG DG +
Sbjct: 58 EKLRSVSTKDQDLSKSSTEASYGDWKVKHDDKDCRVMYREGLKGSPFHTLLVEGCTDGTI 117
Query: 120 DVCLCLSWEAPLYKKWWPQFTVPPFKVLAADCLQKVQIGEQISLVRMKVPWPLSKREAIV 179
+ CLC+ WE+ Y+KWWP+ T P F+VL A CLQK +I EQI L+R+K PWPL+ REA++
Sbjct: 118 EDCLCVCWESSFYEKWWPKLTFPSFRVLEAKCLQKFRIDEQICLLRVKAPWPLTDREAVL 177
Query: 180 HYYLVEYFQEDLTIVLIKSVSESESMDGAIDGINRDAIPEAKDVVRIDFVGGYVLQKVTS 239
+++ EYF++DL I+L+ S+ E ES G++ +N VRIDFVGG +QKVT
Sbjct: 178 QFFVFEYFKDDLVIILLNSI-EVES--GSVAEVN---------AVRIDFVGGVAIQKVTP 225
Query: 240 ERSYFRTMANLDIKLDFVPPTLINFISRQLIGSGFRLYQKAVSSMMNNDKEIIKTLGDSL 299
E+SY R +A +DIKLD VPP+LINF+SRQL+G+GF+L++K + S+ +D + L D L
Sbjct: 226 EKSYIRFIAEVDIKLDLVPPSLINFMSRQLLGNGFKLFKKTIGSVAESD-DYKTVLADPL 284
Query: 300 YVGIREALYNTSGSNAM 316
Y IREALY++ ++ +
Sbjct: 285 YTHIREALYSSDKTDEI 301
>AT3G11720.3 | Symbols: | Polyketide cyclase/dehydrase and lipid
transport superfamily protein | chr3:3705991-3708721
REVERSE LENGTH=596
Length = 596
Score = 309 bits (792), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 151/317 (47%), Positives = 216/317 (68%), Gaps = 17/317 (5%)
Query: 1 MAKKRHIVQYRERLDRTLASPDLTNGEMLKTLVKSQLLRSSQFEIEGYEDKFVETKTAEI 60
M KKR + +YRERL+ TL+SP+L N + LKTLV+ QL +I D+ V ++ I
Sbjct: 55 MEKKRDVSEYRERLNETLSSPELINEQTLKTLVRKQLNEECSVDIL---DQRVAALSSTI 111
Query: 61 TNFLDMISASVDNSGGSS-ISHTDWKLKQDNEDYRVMYREGPEGTPFHTLMVEGYIDGPV 119
+ + D S S+ S+ DWK+K D++D RVMYREG +G+PFHTL+VEG DG +
Sbjct: 112 EKLRSVSTKDQDLSKSSTEASYGDWKVKHDDKDCRVMYREGLKGSPFHTLLVEGCTDGTI 171
Query: 120 DVCLCLSWEAPLYKKWWPQFTVPPFKVLAADCLQKVQIGEQISLVRMKVPWPLSKREAIV 179
+ CLC+ WE+ Y+KWWP+ T P F+VL A CLQK +I EQI L+R+K PWPL+ REA++
Sbjct: 172 EDCLCVCWESSFYEKWWPKLTFPSFRVLEAKCLQKFRIDEQICLLRVKAPWPLTDREAVL 231
Query: 180 HYYLVEYFQEDLTIVLIKSVSESESMDGAIDGINRDAIPEAKDVVRIDFVGGYVLQKVTS 239
+++ EYF++DL I+L+ S+ E ES G++ +N VRIDFVGG +QKVT
Sbjct: 232 QFFVFEYFKDDLVIILLNSI-EVES--GSVAEVN---------AVRIDFVGGVAIQKVTP 279
Query: 240 ERSYFRTMANLDIKLDFVPPTLINFISRQLIGSGFRLYQKAVSSMMNNDKEIIKTLGDSL 299
E+SY R +A +DIKLD VPP+LINF+SRQL+G+GF+L++K + S+ +D + L D L
Sbjct: 280 EKSYIRFIAEVDIKLDLVPPSLINFMSRQLLGNGFKLFKKTIGSVAESD-DYKTVLADPL 338
Query: 300 YVGIREALYNTSGSNAM 316
Y IREALY++ ++ +
Sbjct: 339 YTHIREALYSSDKTDEI 355
>AT5G06440.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: Polyketide cyclase/dehydrase and lipid transport
superfamily protein (TAIR:AT3G11720.3); Has 155 Blast
hits to 153 proteins in 39 species: Archae - 0; Bacteria
- 4; Metazoa - 5; Fungi - 6; Plants - 101; Viruses - 0;
Other Eukaryotes - 39 (source: NCBI BLink). |
chr5:1964641-1966475 REVERSE LENGTH=405
Length = 405
Score = 305 bits (782), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 139/253 (54%), Positives = 190/253 (75%), Gaps = 9/253 (3%)
Query: 85 KLKQDNEDYRVMYREGPEGTPFHTLMVEGYIDGPVDVCLCLSWEAPLYKKWWPQFTVPPF 144
+LK D ED RVMYREG +G+PFHTL+VEGY+DGP+ CLC+SWE+ LYKKWWPQ+ PPF
Sbjct: 5 QLKHDLEDCRVMYREGLDGSPFHTLLVEGYMDGPIHECLCVSWESTLYKKWWPQYAFPPF 64
Query: 145 KVLAADCLQKVQIGEQISLVRMKVPWPLSKREAIVHYYLVEYFQEDLTIVLIKSVSESES 204
++L + CLQKV +GEQI L RMKVPWPL++RE I+HY+ EYF++ L ++L+ ++S+ S
Sbjct: 65 RILKSTCLQKVGVGEQICLARMKVPWPLTEREMILHYFSFEYFKDGLVVILLNTISDLNS 124
Query: 205 MDGAIDGINRDAIPEAKDVVRIDFVGGYVLQKVTSERSYFRTMANLDIKLDFVPPTLINF 264
+ + I IPE+ D VR+D VGG+VLQKVT +RSYFRT+ ++DIKLD +PP+L+NF
Sbjct: 125 IGVSSTDI---IIPESPDAVRMDLVGGFVLQKVTPQRSYFRTIGDMDIKLDLMPPSLMNF 181
Query: 265 ISRQLIGSGFRLYQKAVSSMMNNDKEIIKTLGDSLYVGIREALYNTSGS----NAMDGEE 320
ISRQLIG+GFRLY+K+V+S+ D++ + L D LY IR ALY+T + ++ E
Sbjct: 182 ISRQLIGNGFRLYKKSVASVAKFDEDYSRALTDPLYTKIRRALYSTDEAVEEEPKLETNE 241
Query: 321 LNIVSSILPAEEH 333
+N V+ LP EH
Sbjct: 242 VNGVT--LPKHEH 252