Miyakogusa Predicted Gene
- Lj1g3v4752650.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v4752650.1 tr|A9TLQ3|A9TLQ3_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_147462,41.41,0.00000000000005,RNA recognition motif,RNA
recognition motif domain; RRM_1,RNA recognition motif domain;
SUBFAMILY NO,CUFF.33079.1
(320 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding pr... 296 2e-80
AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 164 1e-40
AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 149 2e-36
AT3G52150.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 147 1e-35
AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 147 1e-35
AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RN... 146 2e-35
AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 3... 140 8e-34
AT2G35410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 135 4e-32
AT1G01080.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 122 4e-28
AT1G01080.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 118 6e-27
AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29... 90 2e-18
AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29... 90 2e-18
AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29... 90 2e-18
AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29... 90 2e-18
AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs... 88 9e-18
AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 | chr3:5... 88 1e-17
AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45... 87 2e-17
AT5G19350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 86 3e-17
AT5G19350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 86 3e-17
AT3G19130.1 | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47... 85 7e-17
AT1G54080.1 | Symbols: UBP1A | oligouridylate-binding protein 1A... 85 9e-17
AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 83 2e-16
AT1G47490.2 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47... 83 2e-16
AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 | chr1:1... 83 3e-16
AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |... 83 3e-16
AT1G11650.1 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/R... 82 4e-16
AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |... 82 7e-16
AT1G47490.1 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47... 81 8e-16
AT1G11650.2 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/R... 81 8e-16
AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding pro... 81 9e-16
AT1G17370.2 | Symbols: UBP1B | oligouridylate binding protein 1B... 81 1e-15
AT4G09040.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 80 1e-15
AT1G54080.2 | Symbols: UBP1A | oligouridylate-binding protein 1A... 80 1e-15
AT4G09040.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 80 2e-15
AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 79 3e-15
AT1G17370.1 | Symbols: UBP1B | oligouridylate binding protein 1B... 79 3e-15
AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 | chr2:1... 79 5e-15
AT1G47500.1 | Symbols: ATRBP47C', RBP47C' | RNA-binding protein ... 78 6e-15
AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 78 7e-15
AT4G26650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 77 1e-14
AT1G49600.1 | Symbols: ATRBP47A, RBP47A | RNA-binding protein 47... 77 2e-14
AT5G06210.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) famil... 77 2e-14
AT3G55340.1 | Symbols: PHIP1 | phragmoplastin interacting protei... 75 5e-14
AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 74 1e-13
AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 74 1e-13
AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 74 1e-13
AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich RNA-... 74 1e-13
AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 73 2e-13
AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 73 2e-13
AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 73 2e-13
AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motif... 73 3e-13
AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 72 5e-13
AT3G26420.1 | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motifs... 72 5e-13
AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protei... 72 6e-13
AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 71 1e-12
AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 71 1e-12
AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 69 4e-12
AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 69 4e-12
AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2... 69 4e-12
AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2... 69 4e-12
AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 69 5e-12
AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 69 5e-12
AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 | chr1:8... 69 6e-12
AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 | chr1:1... 68 7e-12
AT2G16940.2 | Symbols: | Splicing factor, CC1-like | chr2:73428... 68 8e-12
AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 67 1e-11
AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 67 1e-11
AT2G21660.2 | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, an... 67 1e-11
AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold, circa... 67 1e-11
AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 67 1e-11
AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 67 1e-11
AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 67 2e-11
AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 67 2e-11
AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 67 2e-11
AT2G16940.1 | Symbols: | Splicing factor, CC1-like | chr2:73428... 65 5e-11
AT1G71800.1 | Symbols: CSTF64 | cleavage stimulating factor 64 |... 65 6e-11
AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protei... 65 9e-11
AT4G13860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 64 2e-10
AT3G04500.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 63 3e-10
AT4G14300.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 63 3e-10
AT5G09880.1 | Symbols: | Splicing factor, CC1-like | chr5:30816... 62 5e-10
AT2G16940.3 | Symbols: | Splicing factor, CC1-like | chr2:73428... 62 5e-10
AT5G19960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 62 5e-10
AT5G47620.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 62 6e-10
AT2G46780.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 61 8e-10
AT2G21440.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 61 1e-09
AT4G36960.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 1e-09
AT4G36960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 1e-09
AT4G16280.4 | Symbols: | RNA binding;abscisic acid binding | ch... 60 3e-09
AT1G03457.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 3e-09
AT3G15010.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 3e-09
AT3G15010.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 3e-09
AT2G37510.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 4e-09
AT1G60650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 4e-09
AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 4e-09
AT4G39260.4 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 59 4e-09
AT4G16280.3 | Symbols: FCA | RNA binding;abscisic acid binding |... 59 4e-09
AT3G06970.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 5e-09
AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |... 59 5e-09
AT1G03457.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 5e-09
AT5G47320.1 | Symbols: RPS19 | ribosomal protein S19 | chr5:1920... 59 6e-09
AT4G03110.2 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding protein-... 58 8e-09
AT1G13690.1 | Symbols: ATE1 | ATPase E1 | chr1:4693380-4694179 F... 58 1e-08
AT4G03110.1 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding protein-... 58 1e-08
AT1G07350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 58 1e-08
AT5G64200.2 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human... 58 1e-08
AT5G64200.1 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human... 58 1e-08
AT1G07350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 1e-08
AT3G10400.1 | Symbols: | RNA recognition motif and CCHC-type zi... 57 1e-08
AT5G11412.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 1e-08
AT5G41690.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 2e-08
AT2G33410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 2e-08
AT1G76460.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 3e-08
AT1G48920.1 | Symbols: ATNUC-L1, PARL1, NUC-L1 | nucleolin like ... 56 3e-08
AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 4e-08
AT4G19610.1 | Symbols: | nucleotide binding;nucleic acid bindin... 55 5e-08
AT1G33470.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 5e-08
AT1G33470.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 6e-08
AT3G46020.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 6e-08
AT5G53680.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 7e-08
AT1G22910.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 7e-08
AT1G60900.1 | Symbols: | U2 snRNP auxilliary factor, large subu... 55 7e-08
AT1G22330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 8e-08
AT1G22910.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 9e-08
AT1G09140.1 | Symbols: ATSRP30, SR30, At-SR30 | SERINE-ARGININE ... 54 1e-07
AT5G02530.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 1e-07
AT5G02530.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 1e-07
AT1G22910.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 1e-07
AT2G27330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 1e-07
AT1G09140.2 | Symbols: ATSRP30, SR30, At-SR30 | SERINE-ARGININE ... 54 1e-07
AT1G16610.3 | Symbols: SR45 | arginine/serine-rich 45 | chr1:567... 54 2e-07
AT1G16610.2 | Symbols: SR45, RNPS1 | arginine/serine-rich 45 | c... 54 2e-07
AT1G16610.1 | Symbols: SR45, RNPS1 | arginine/serine-rich 45 | c... 54 2e-07
AT4G00830.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 2e-07
AT4G00830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 2e-07
AT2G43410.1 | Symbols: FPA | RNA binding | chr2:18026397-1803098... 54 2e-07
AT2G43410.4 | Symbols: FPA | RNA binding | chr2:18026397-1803098... 54 2e-07
AT2G43410.3 | Symbols: FPA | RNA binding | chr2:18026397-1803098... 54 2e-07
AT2G43410.2 | Symbols: FPA | RNA binding | chr2:18026397-1803098... 54 2e-07
AT2G22100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 3e-07
AT2G21690.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 3e-07
AT5G51300.3 | Symbols: | splicing factor-related | chr5:2084988... 53 4e-07
AT5G51300.2 | Symbols: | splicing factor-related | chr5:2084988... 53 4e-07
AT5G51300.1 | Symbols: | splicing factor-related | chr5:2084988... 53 4e-07
AT1G58470.1 | Symbols: ATRBP1, RBP1 | RNA-binding protein 1 | ch... 52 4e-07
AT1G20880.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 4e-07
AT1G20880.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 4e-07
AT1G78260.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 5e-07
AT4G20030.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 6e-07
AT1G02840.3 | Symbols: SR1, ATSRP34, SRP34, SR34, At-SR34 | RNA-... 52 7e-07
AT1G02840.1 | Symbols: SR1, ATSRP34, SRP34, SR34, At-SR34 | RNA-... 52 7e-07
AT1G02840.2 | Symbols: SR1, ATSRP34, SRP34, SR34, At-SR34 | RNA-... 52 8e-07
AT1G18630.1 | Symbols: GR-RBP6 | glycine-rich RNA-binding protei... 51 8e-07
AT5G59950.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 1e-06
AT4G35785.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 1e-06
AT4G00830.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 1e-06
AT5G59950.5 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 1e-06
AT5G59950.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 1e-06
AT3G18610.1 | Symbols: PARLL1, ATNUC-L2, NUC-L2 | nucleolin like... 51 1e-06
AT4G00830.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 1e-06
AT5G08695.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 1e-06
AT5G59950.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 1e-06
AT4G35785.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 1e-06
AT4G35785.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 1e-06
AT5G59950.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 1e-06
AT2G47310.1 | Symbols: | flowering time control protein-related... 51 1e-06
AT1G78260.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 1e-06
AT3G47120.1 | Symbols: | RNA recognition motif (RRM)-containing... 50 2e-06
AT5G44200.2 | Symbols: CBP20, ATCBP20 | CAP-binding protein 20 |... 50 2e-06
AT5G44200.1 | Symbols: CBP20, ATCBP20 | CAP-binding protein 20 |... 50 2e-06
AT5G47620.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 2e-06
AT5G54580.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 2e-06
AT1G29400.2 | Symbols: AML5, ML5 | MEI2-like protein 5 | chr1:10... 50 2e-06
AT1G29400.1 | Symbols: AML5, ML5 | MEI2-like protein 5 | chr1:10... 50 2e-06
AT3G52660.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 2e-06
AT3G52660.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 2e-06
AT4G36690.3 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor, l... 50 3e-06
AT3G56860.5 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 49 4e-06
AT3G56860.4 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 49 4e-06
AT3G56860.2 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 49 4e-06
AT3G56860.1 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 49 4e-06
AT3G56860.3 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 49 4e-06
AT3G54770.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 4e-06
AT4G02430.2 | Symbols: SR34b, At-SR34b | RNA-binding (RRM/RBD/RN... 49 4e-06
AT4G36690.2 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor, l... 49 5e-06
AT5G59860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 5e-06
AT4G02430.1 | Symbols: SR34b, At-SR34b | RNA-binding (RRM/RBD/RN... 49 5e-06
AT2G41060.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 5e-06
AT2G41060.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 5e-06
AT5G07290.1 | Symbols: AML4, ML4 | MEI2-like 4 | chr5:2294248-22... 49 6e-06
AT5G04810.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 49 6e-06
AT4G36690.1 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor, l... 48 8e-06
AT4G36690.4 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor, l... 48 9e-06
>AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding
protein 33 | chr3:19421619-19422855 FORWARD LENGTH=329
Length = 329
Score = 296 bits (757), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 138/223 (61%), Positives = 187/223 (83%), Gaps = 4/223 (1%)
Query: 101 EQKVSTSSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMG 160
+Q S ++ RLYVGNLPY++TSS+L++IF EAGTVV V+++YD+VTDRSRGF FVTMG
Sbjct: 106 KQTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMG 165
Query: 161 SVDDAKEAIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGN 220
S+++AKEA++MF+ SQ+GGR V+VNFPEVP+GGE VM KIR+NNR +VDS HK+YAGN
Sbjct: 166 SIEEAKEAMQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGN 225
Query: 221 LGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEV 280
LGW ++SQ LKD F +QPG++ AKVIYER++GRSRGFGF++FE+A++V++AL TMNGVEV
Sbjct: 226 LGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEV 285
Query: 281 QGRELRLNLAAVKAP---SSPSVTE-ENEGSSVDTSELVSSAS 319
+GR LRLNLA+ + S PSV E E E +S++++E++S+ S
Sbjct: 286 EGRALRLNLASEREKPTVSPPSVEEGETEEASLESNEVLSNVS 328
>AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:15634980-15636331 REVERSE LENGTH=289
Length = 289
Score = 164 bits (414), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 83/203 (40%), Positives = 132/203 (65%), Gaps = 10/203 (4%)
Query: 103 KVSTSSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSV 162
K + S D +L+VGNLP+++ S+QL ++F AG V VEV+YD++T RSRGF FVTM SV
Sbjct: 83 KEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSV 142
Query: 163 DDAKEAIRMFDGSQVGGRIVRVNF-PEVPKGGERLVMGPKIRNNNRDFVDSS-------- 213
+ + A + F+G ++ GR +RVN P PK + GP+ +
Sbjct: 143 SEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGS 202
Query: 214 -HKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAAL 272
+++Y GNL W V L+ +F+EQ +V A+VIY+RDSGRS+GFGFVT++++Q+V+ A+
Sbjct: 203 GNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAI 262
Query: 273 KTMNGVEVQGRELRLNLAAVKAP 295
K+++G ++ GR++R++ A + P
Sbjct: 263 KSLDGADLDGRQIRVSEAEARPP 285
>AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:22093678-22094540 REVERSE LENGTH=258
Length = 258
Score = 149 bits (377), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 79/210 (37%), Positives = 126/210 (60%), Gaps = 16/210 (7%)
Query: 89 ETETSDKPQQEEEQKVSTSSD-----DRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVM 143
ET T ++E++ S D + +LY GNLPY++ S+ L +I + VEV+
Sbjct: 58 ETITVKLEEEEKDDGASAVLDPPAAVNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVL 117
Query: 144 YDRVTDRSRGFAFVTMGSVDDAKEAIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIR 203
Y+R T +SRGFAFVTM +V+D I DG++ GR ++VNF + PK
Sbjct: 118 YNRDTGQSRGFAFVTMSNVEDCNIIIDNLDGTEYLGRALKVNFADKPK-----------P 166
Query: 204 NNNRDFVDSSHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFE 263
N + ++ HK++ GNL W V+S+ L F E +V A+V+++ D+GRSRG+GFV +
Sbjct: 167 NKEPLYPETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYS 226
Query: 264 TAQDVEAALKTMNGVEVQGRELRLNLAAVK 293
+ ++E AL++++G E++GR +R+NLA K
Sbjct: 227 SKAEMETALESLDGFELEGRAIRVNLAQGK 256
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 56/99 (56%), Gaps = 2/99 (2%)
Query: 93 SDKPQQEEEQKVSTSSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSR 152
+DKP+ +E + + +L+VGNL +++TS L F E G VV V++D T RSR
Sbjct: 161 ADKPKPNKEPLYPET--EHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSR 218
Query: 153 GFAFVTMGSVDDAKEAIRMFDGSQVGGRIVRVNFPEVPK 191
G+ FV S + + A+ DG ++ GR +RVN + K
Sbjct: 219 GYGFVCYSSKAEMETALESLDGFELEGRAIRVNLAQGKK 257
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 50/93 (53%), Gaps = 4/93 (4%)
Query: 215 KIYAGNLGWRVSSQDLKDVFAE--QPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAAL 272
K+Y GNL + V S L + + P LV +V+Y RD+G+SRGF FVT +D +
Sbjct: 86 KLYFGNLPYNVDSATLAQIIQDFANPELV--EVLYNRDTGQSRGFAFVTMSNVEDCNIII 143
Query: 273 KTMNGVEVQGRELRLNLAAVKAPSSPSVTEENE 305
++G E GR L++N A P+ + E E
Sbjct: 144 DNLDGTEYLGRALKVNFADKPKPNKEPLYPETE 176
>AT3G52150.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342074-19343090 FORWARD LENGTH=253
Length = 253
Score = 147 bits (370), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 81/208 (38%), Positives = 128/208 (61%), Gaps = 12/208 (5%)
Query: 86 PEPETETSDKPQQEEEQKVSTSSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYD 145
P TET +KP + +S RR+Y+GN+P ++T+ QLT++ E G V V+VMYD
Sbjct: 55 PYAVTETEEKPAALD----PSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYD 110
Query: 146 RVTDRSRGFAFVTMGSVDDAKEAIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPK---I 202
+ + RSR F F TM SV+DA + +G+ V GR ++VN E P + P +
Sbjct: 111 KYSGRSRRFGFATMKSVEDANAVVEKLNGNTVEGREIKVNITEKP-----IASSPDLSVL 165
Query: 203 RNNNRDFVDSSHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTF 262
++ + FVDS +K+Y GNL V+ + L+++F+E+ +VSAKV + +S GFGFVTF
Sbjct: 166 QSEDSAFVDSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTF 225
Query: 263 ETAQDVEAALKTMNGVEVQGRELRLNLA 290
+ +DVEAA+ +N ++G+++R+N A
Sbjct: 226 SSEEDVEAAIVALNNSLLEGQKIRVNKA 253
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 63/103 (61%), Gaps = 2/103 (1%)
Query: 211 DSSHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEA 270
+++ ++Y GN+ V+++ L + E + +V+Y++ SGRSR FGF T ++ +D A
Sbjct: 73 EAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANA 132
Query: 271 ALKTMNGVEVQGRELRLNLAAVKAPSSP--SVTEENEGSSVDT 311
++ +NG V+GRE+++N+ SSP SV + + + VD+
Sbjct: 133 VVEKLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDS 175
>AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342074-19343090 FORWARD LENGTH=253
Length = 253
Score = 147 bits (370), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 81/208 (38%), Positives = 128/208 (61%), Gaps = 12/208 (5%)
Query: 86 PEPETETSDKPQQEEEQKVSTSSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYD 145
P TET +KP + +S RR+Y+GN+P ++T+ QLT++ E G V V+VMYD
Sbjct: 55 PYAVTETEEKPAALD----PSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYD 110
Query: 146 RVTDRSRGFAFVTMGSVDDAKEAIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPK---I 202
+ + RSR F F TM SV+DA + +G+ V GR ++VN E P + P +
Sbjct: 111 KYSGRSRRFGFATMKSVEDANAVVEKLNGNTVEGREIKVNITEKP-----IASSPDLSVL 165
Query: 203 RNNNRDFVDSSHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTF 262
++ + FVDS +K+Y GNL V+ + L+++F+E+ +VSAKV + +S GFGFVTF
Sbjct: 166 QSEDSAFVDSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTF 225
Query: 263 ETAQDVEAALKTMNGVEVQGRELRLNLA 290
+ +DVEAA+ +N ++G+++R+N A
Sbjct: 226 SSEEDVEAAIVALNNSLLEGQKIRVNKA 253
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 63/103 (61%), Gaps = 2/103 (1%)
Query: 211 DSSHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEA 270
+++ ++Y GN+ V+++ L + E + +V+Y++ SGRSR FGF T ++ +D A
Sbjct: 73 EAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANA 132
Query: 271 ALKTMNGVEVQGRELRLNLAAVKAPSSP--SVTEENEGSSVDT 311
++ +NG V+GRE+++N+ SSP SV + + + VD+
Sbjct: 133 VVEKLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDS 175
>AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RNA
binding protein | chr4:12766223-12767952 REVERSE
LENGTH=329
Length = 329
Score = 146 bits (369), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 74/188 (39%), Positives = 119/188 (63%), Gaps = 9/188 (4%)
Query: 108 SDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKE 167
S++ +L+VGNL Y + S L +F +AGTV EV+Y+R TD+SRGF FVTM SVD+A+
Sbjct: 147 SEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAET 206
Query: 168 AIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSS 227
A+ F+ + GR++ VN P+G R P++ + + ++Y GNL W V +
Sbjct: 207 AVEKFNRYDLNGRLLTVN-KAAPRGS-RPERAPRV-------YEPAFRVYVGNLPWDVDN 257
Query: 228 QDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQGRELRL 287
L+ +F+E +V A+V+Y+R++GRSRGFGFVT ++ A+ ++G ++GR +R+
Sbjct: 258 GRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRV 317
Query: 288 NLAAVKAP 295
N+A + P
Sbjct: 318 NVAEERPP 325
>AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 31B
| chr5:20452677-20453965 REVERSE LENGTH=289
Length = 289
Score = 140 bits (354), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 73/182 (40%), Positives = 117/182 (64%), Gaps = 9/182 (4%)
Query: 109 DDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEA 168
++ +L+VGNLPY + S L +F +AGTV EV+Y+R TD+SRGF FVTM +V++A++A
Sbjct: 111 EEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKA 170
Query: 169 IRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSSQ 228
+ F+ +V GR + VN P+G R P++ D++ +IY GNL W V S
Sbjct: 171 VEKFNSFEVNGRRLTVN-RAAPRGS-RPERQPRV-------YDAAFRIYVGNLPWDVDSG 221
Query: 229 DLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQGRELRLN 288
L+ +F+E +V A+V+ +R++GRSRGFGFV +V A+ ++G ++GR +++N
Sbjct: 222 RLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVN 281
Query: 289 LA 290
+A
Sbjct: 282 VA 283
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 47/77 (61%)
Query: 112 RLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRM 171
R+YVGNLP+ + S +L +F E G VV V+ DR T RSRGF FV M + ++ AI
Sbjct: 208 RIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAA 267
Query: 172 FDGSQVGGRIVRVNFPE 188
DG + GR ++VN E
Sbjct: 268 LDGQNLEGRAIKVNVAE 284
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 52/81 (64%), Gaps = 2/81 (2%)
Query: 215 KIYAGNLGWRVSSQDLKDVFAEQPGLVS-AKVIYERDSGRSRGFGFVTFETAQDVEAALK 273
K++ GNL + V SQ L +F EQ G V ++VIY RD+ +SRGFGFVT T ++ E A++
Sbjct: 114 KLFVGNLPYDVDSQALAMLF-EQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVE 172
Query: 274 TMNGVEVQGRELRLNLAAVKA 294
N EV GR L +N AA +
Sbjct: 173 KFNSFEVNGRRLTVNRAAPRG 193
>AT2G35410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:14898341-14899590 FORWARD LENGTH=308
Length = 308
Score = 135 bits (340), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 85/231 (36%), Positives = 134/231 (58%), Gaps = 22/231 (9%)
Query: 87 EPETETSDKPQQEEEQKVSTSSD-DRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYD 145
E ET ++ QEE+ + + +S+ R+L+V NLP+SM+ + ++E+F + GTV +VE++
Sbjct: 70 EKETSADEETSQEEKTEETQNSNLKRKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQ 129
Query: 146 RVTDRSRGFAFVTMGSVDDAKEAIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNN 205
+ ++RGFAFVTM S ++A+ AI FD QV GRI+ V+F R P ++
Sbjct: 130 K-DGKNRGFAFVTMASGEEAQAAIDKFDTFQVSGRIISVSFA-------RRFKKPTPKSP 181
Query: 206 NRDFV-----DSSHKIYAGNLGWRVSSQDLKDVF-AEQPGLVSAKVIYERDSGRSRGFGF 259
N D D+ HK+Y NL W+ S L+++F A VSA+V++ GRS G+GF
Sbjct: 182 N-DLPSPAPGDTRHKLYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPEGRSSGYGF 240
Query: 260 VTFETAQDVEAALKTMNGVEVQGRELRLNLAAVKAPSSPSVTEENEGSSVD 310
V+F T ++ E A+ +NG E+ GR + L S S +E +G SV+
Sbjct: 241 VSFATREEAENAITKLNGKEIMGRPITLKF------SLRSASESEDGDSVE 285
>AT1G01080.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:45503-46789 REVERSE LENGTH=293
Length = 293
Score = 122 bits (305), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 68/176 (38%), Positives = 108/176 (61%), Gaps = 6/176 (3%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMF 172
LYV N+P S +QL ++F GTV+SVEV + T SRG +VTMGS++ AK AI
Sbjct: 110 LYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIASL 169
Query: 173 DGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFV---DSSHKIYAGNLGWRVSSQD 229
DG++VGGR +RV + G R P++ N+ + +S HK+Y GNL W
Sbjct: 170 DGTEVGGREMRVRYSVDMNPGTR--RNPEVLNSTPKKILMYESQHKVYVGNLPWFTQPDG 227
Query: 230 LKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQGREL 285
L++ F++ +VS +V+++R +GR+R F F++F + ++ +AAL + NG + +GR +
Sbjct: 228 LRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAAL-SFNGTQYEGRRI 282
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Query: 102 QKVSTSSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGS 161
+K+ ++YVGNLP+ L F + GT+VS V++DR T R+R FAF++ S
Sbjct: 203 KKILMYESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTS 262
Query: 162 VDDAKEAIRMFDGSQVGGR--IVR 183
++ ++A F+G+Q GR IVR
Sbjct: 263 GEE-RDAALSFNGTQYEGRRIIVR 285
>AT1G01080.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:45503-46789 REVERSE LENGTH=294
Length = 294
Score = 118 bits (295), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 68/177 (38%), Positives = 109/177 (61%), Gaps = 7/177 (3%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVM-YDRVTDRSRGFAFVTMGSVDDAKEAIRM 171
LYV N+P S +QL ++F GTV+SVEV+ + T SRG +VTMGS++ AK AI
Sbjct: 110 LYVCNIPRSYDIAQLLDMFQPFGTVISVEVVSRNPQTGESRGSGYVTMGSINSAKIAIAS 169
Query: 172 FDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFV---DSSHKIYAGNLGWRVSSQ 228
DG++VGGR +RV + G R P++ N+ + +S HK+Y GNL W
Sbjct: 170 LDGTEVGGREMRVRYSVDMNPGTR--RNPEVLNSTPKKILMYESQHKVYVGNLPWFTQPD 227
Query: 229 DLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQGREL 285
L++ F++ +VS +V+++R +GR+R F F++F + ++ +AAL + NG + +GR +
Sbjct: 228 GLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAAL-SFNGTQYEGRRI 283
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Query: 102 QKVSTSSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGS 161
+K+ ++YVGNLP+ L F + GT+VS V++DR T R+R FAF++ S
Sbjct: 204 KKILMYESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTS 263
Query: 162 VDDAKEAIRMFDGSQVGGR--IVR 183
++ ++A F+G+Q GR IVR
Sbjct: 264 GEE-RDAALSFNGTQYEGRRIIVR 286
>AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 61/82 (74%)
Query: 214 HKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALK 273
+++Y GNL W V L+++F EQ +V A+VIY+RDSGRS+GFGFVT ++Q+V+ A+
Sbjct: 257 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAIN 316
Query: 274 TMNGVEVQGRELRLNLAAVKAP 295
++NG ++ GR++R++ A + P
Sbjct: 317 SLNGADLDGRQIRVSEAEARPP 338
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/95 (46%), Positives = 62/95 (65%), Gaps = 1/95 (1%)
Query: 108 SDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKE 167
S D +L+VGNL +++ S+QL ++F AG V VEV+YD+VT RSRGF FVTM + + +
Sbjct: 96 SPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEA 155
Query: 168 AIRMFDGSQVGGRIVRVNF-PEVPKGGERLVMGPK 201
A + F+G + GR +RVN P PK E GP+
Sbjct: 156 AAQQFNGYEFEGRPLRVNAGPPPPKREESFSRGPR 190
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 51/83 (61%), Gaps = 2/83 (2%)
Query: 112 RLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRM 171
RLYVGNL + + L +F E G VV V+YDR + RS+GF FVT+ S + ++AI
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 172 FDGSQVGGRIVRVNFPEV--PKG 192
+G+ + GR +RV+ E P+G
Sbjct: 318 LNGADLDGRQIRVSEAEARPPRG 340
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 48/74 (64%)
Query: 215 KIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKT 274
K++ GNL + V S L +F + +VIY++ +GRSRGFGFVT TA +VEAA +
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 275 MNGVEVQGRELRLN 288
NG E +GR LR+N
Sbjct: 160 FNGYEFEGRPLRVN 173
>AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 61/82 (74%)
Query: 214 HKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALK 273
+++Y GNL W V L+++F EQ +V A+VIY+RDSGRS+GFGFVT ++Q+V+ A+
Sbjct: 257 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAIN 316
Query: 274 TMNGVEVQGRELRLNLAAVKAP 295
++NG ++ GR++R++ A + P
Sbjct: 317 SLNGADLDGRQIRVSEAEARPP 338
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/95 (46%), Positives = 62/95 (65%), Gaps = 1/95 (1%)
Query: 108 SDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKE 167
S D +L+VGNL +++ S+QL ++F AG V VEV+YD+VT RSRGF FVTM + + +
Sbjct: 96 SPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEA 155
Query: 168 AIRMFDGSQVGGRIVRVNF-PEVPKGGERLVMGPK 201
A + F+G + GR +RVN P PK E GP+
Sbjct: 156 AAQQFNGYEFEGRPLRVNAGPPPPKREESFSRGPR 190
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 51/83 (61%), Gaps = 2/83 (2%)
Query: 112 RLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRM 171
RLYVGNL + + L +F E G VV V+YDR + RS+GF FVT+ S + ++AI
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 172 FDGSQVGGRIVRVNFPEV--PKG 192
+G+ + GR +RV+ E P+G
Sbjct: 318 LNGADLDGRQIRVSEAEARPPRG 340
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 48/74 (64%)
Query: 215 KIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKT 274
K++ GNL + V S L +F + +VIY++ +GRSRGFGFVT TA +VEAA +
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 275 MNGVEVQGRELRLN 288
NG E +GR LR+N
Sbjct: 160 FNGYEFEGRPLRVN 173
>AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 61/82 (74%)
Query: 214 HKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALK 273
+++Y GNL W V L+++F EQ +V A+VIY+RDSGRS+GFGFVT ++Q+V+ A+
Sbjct: 257 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAIN 316
Query: 274 TMNGVEVQGRELRLNLAAVKAP 295
++NG ++ GR++R++ A + P
Sbjct: 317 SLNGADLDGRQIRVSEAEARPP 338
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/95 (46%), Positives = 62/95 (65%), Gaps = 1/95 (1%)
Query: 108 SDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKE 167
S D +L+VGNL +++ S+QL ++F AG V VEV+YD+VT RSRGF FVTM + + +
Sbjct: 96 SPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEA 155
Query: 168 AIRMFDGSQVGGRIVRVNF-PEVPKGGERLVMGPK 201
A + F+G + GR +RVN P PK E GP+
Sbjct: 156 AAQQFNGYEFEGRPLRVNAGPPPPKREESFSRGPR 190
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 51/83 (61%), Gaps = 2/83 (2%)
Query: 112 RLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRM 171
RLYVGNL + + L +F E G VV V+YDR + RS+GF FVT+ S + ++AI
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 172 FDGSQVGGRIVRVNFPEV--PKG 192
+G+ + GR +RV+ E P+G
Sbjct: 318 LNGADLDGRQIRVSEAEARPPRG 340
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 48/74 (64%)
Query: 215 KIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKT 274
K++ GNL + V S L +F + +VIY++ +GRSRGFGFVT TA +VEAA +
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 275 MNGVEVQGRELRLN 288
NG E +GR LR+N
Sbjct: 160 FNGYEFEGRPLRVN 173
>AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=363
Length = 363
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 61/82 (74%)
Query: 214 HKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALK 273
+++Y GNL W V L+++F EQ +V A+VIY+RDSGRS+GFGFVT ++Q+V+ A+
Sbjct: 278 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAIN 337
Query: 274 TMNGVEVQGRELRLNLAAVKAP 295
++NG ++ GR++R++ A + P
Sbjct: 338 SLNGADLDGRQIRVSEAEARPP 359
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 60/116 (51%), Gaps = 22/116 (18%)
Query: 108 SDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGS------ 161
S D +L+VGNL +++ S+QL ++F AG V VEV+YD+VT RSRGF FVTM +
Sbjct: 96 SPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEA 155
Query: 162 ---------------VDDAKEAIRMFDGSQVGGRIVRVNF-PEVPKGGERLVMGPK 201
+ IR+ G + GR +RVN P PK E GP+
Sbjct: 156 AAQQFNGYVSRYLCSLLCLYLLIRVLCGLEFEGRPLRVNAGPPPPKREESFSRGPR 211
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 51/83 (61%), Gaps = 2/83 (2%)
Query: 112 RLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRM 171
RLYVGNL + + L +F E G VV V+YDR + RS+GF FVT+ S + ++AI
Sbjct: 279 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 338
Query: 172 FDGSQVGGRIVRVNFPEV--PKG 192
+G+ + GR +RV+ E P+G
Sbjct: 339 LNGADLDGRQIRVSEAEARPPRG 361
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 21/95 (22%)
Query: 215 KIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFET---------- 264
K++ GNL + V S L +F + +VIY++ +GRSRGFGFVT T
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 265 -----------AQDVEAALKTMNGVEVQGRELRLN 288
+ ++ + G+E +GR LR+N
Sbjct: 160 FNGYVSRYLCSLLCLYLLIRVLCGLEFEGRPLRVN 194
>AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:8031554-8033517 REVERSE LENGTH=363
Length = 363
Score = 87.8 bits (216), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 106/194 (54%), Gaps = 19/194 (9%)
Query: 102 QKVSTSSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGS 161
Q + + D +YVG L ++ L E+FV+AG VV+V V DRVT+ + + F+ S
Sbjct: 16 QHSAERNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRS 75
Query: 162 VDDAKEAIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNL 221
+DA AI++ + ++ G+ +RVN + ++ +D ++ GNL
Sbjct: 76 EEDADYAIKVLNMIKLHGKPIRVN----------------KASQDKKSLDVGANLFIGNL 119
Query: 222 GWRVSSQDLKDVFAEQPGLVSA--KVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVE 279
V + L D F+ G++++ K++ + D+G SRGFGF+++++ + +AA+++M G
Sbjct: 120 DPDVDEKLLYDTFSAF-GVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQY 178
Query: 280 VQGRELRLNLAAVK 293
+ R++ ++ A K
Sbjct: 179 LSNRQITVSYAYKK 192
>AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 |
chr3:5558676-5560993 REVERSE LENGTH=537
Length = 537
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 107/200 (53%), Gaps = 10/200 (5%)
Query: 98 QEEEQKVSTSSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFV 157
++E ++ + D +YV NL ++T L +F + GTV SV VM D + RSRGF FV
Sbjct: 189 KDERAAMAGNQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGM-GRSRGFGFV 247
Query: 158 TMGSVDDAKEAIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSH--- 214
+ ++AK+A+ G Q+G + + V + K R ++ K +N F+ +
Sbjct: 248 NFCNPENAKKAMESLCGLQLGSKKLFVG-KALKKDERREMLKQKFSDN---FIAKPNMRW 303
Query: 215 -KIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALK 273
+Y NL ++ L+++F +VSAKV+ ++GRS+GFGFV F ++ + A +
Sbjct: 304 SNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCH-ENGRSKGFGFVCFSNCEESKQAKR 362
Query: 274 TMNGVEVQGRELRLNLAAVK 293
+NG V G+ + + +A K
Sbjct: 363 YLNGFLVDGKPIVVRVAERK 382
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 92/181 (50%), Gaps = 14/181 (7%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMF 172
LYV NL S+TSS L +F G+++S +V+ + +S+GF FV + A A
Sbjct: 114 LYVKNLDSSITSSCLERMFCPFGSILSCKVVEE--NGQSKGFGFVQFDTEQSAVSARSAL 171
Query: 173 DGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSSQDLKD 232
GS V G+ + V + ER M N+D S +Y NL V+ L
Sbjct: 172 HGSMVYGKKLFV--AKFINKDERAAMA-----GNQD----STNVYVKNLIETVTDDCLHT 220
Query: 233 VFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQGRELRLNLAAV 292
+F+ Q G VS+ V+ GRSRGFGFV F ++ + A++++ G+++ ++L + A
Sbjct: 221 LFS-QYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALK 279
Query: 293 K 293
K
Sbjct: 280 K 280
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 86/173 (49%), Gaps = 14/173 (8%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMF 172
LYVG+L +T L + F VVSV + + VT +S +A++ S A A+
Sbjct: 23 LYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTRL 82
Query: 173 DGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSSQDLKD 232
+ S + G+ +R+ + + L + R F + +Y NL ++S L+
Sbjct: 83 NHSDLKGKAMRIMWSQ-----RDLAYRRRTRTG---FAN----LYVKNLDSSITSSCLER 130
Query: 233 VFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQGREL 285
+F ++S KV+ E +G+S+GFGFV F+T Q +A ++G V G++L
Sbjct: 131 MFCPFGSILSCKVVEE--NGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKL 181
>AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45A |
chr5:22295412-22298126 FORWARD LENGTH=387
Length = 387
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 107/214 (50%), Gaps = 18/214 (8%)
Query: 102 QKVSTSSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGS 161
Q ++SD + L++G+L M + + +F ++G S +V+ +++T +S G+ F+ S
Sbjct: 51 QNPGSASDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVS 110
Query: 162 VDDAKEAIRMFDGSQVGG--RIVRVNFPEVPKGGERL-VMGPKIRNNNRDFVDSSHKIYA 218
A+ ++ ++G+ + + R+N+ + G +R GP H I+
Sbjct: 111 HSVAERVLQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGP------------DHTIFV 158
Query: 219 GNLGWRVSSQDLKDVFAEQPGLV-SAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNG 277
G+L V+ L D F G V AKV+ +R +GRS+G+GFV F + A+ MNG
Sbjct: 159 GDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNG 218
Query: 278 VEVQGRELRLNLAAVK--APSSPSVTEENEGSSV 309
R +R+ AA K P P++ + +G++
Sbjct: 219 QYCSTRPMRIGPAANKNALPMQPAMYQNTQGANA 252
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 97/218 (44%), Gaps = 19/218 (8%)
Query: 83 NPEPEPETETSDKPQQEE----EQKVSTSSDDRRLYVGNLPYSMTSSQLTEIFVEA-GTV 137
N P P TE + + + E++ T D ++VG+L +T L++ F G+V
Sbjct: 122 NGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYMLSDTFKNVYGSV 181
Query: 138 VSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMFDGSQVGGRIVRVNFPEVPKGGERLV 197
+V+ DR T RS+G+ FV ++ A+ +G R +R+ P K L
Sbjct: 182 KGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIG-PAANK--NALP 238
Query: 198 MGPKIRNNNR-----DFVDSSHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSG 252
M P + N + D ++ I+ G L V+ +LK +F + L+ K+ + G
Sbjct: 239 MQPAMYQNTQGANAGDNDPNNTTIFVGGLDANVTDDELKSIFGQFGELLHVKIPPGKRCG 298
Query: 253 RSRGFGFVTFETAQDVEAALKTMNGVEVQGRELRLNLA 290
FV + E AL +NG ++ G+ +RL+
Sbjct: 299 ------FVQYANKASAEHALSVLNGTQLGGQSIRLSWG 330
>AT5G19350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6518978-6521295 FORWARD LENGTH=421
Length = 421
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 104/211 (49%), Gaps = 24/211 (11%)
Query: 86 PEPETETSDKPQQEEEQKVSTSSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYD 145
P+P + PQ EE R L++G+L Y + + LT F + G +VSV+V+ +
Sbjct: 7 PQPPQGSYHHPQTLEEV--------RTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRN 58
Query: 146 RVTDRSRGFAFVTMGSVDDAKEAIRMFDGSQVGGR--IVRVNFPEVPKGGERLVMGPKIR 203
++T + G+ F+ S A+ ++ ++G+Q+ G R+N+ G+++ GP
Sbjct: 59 KITGQPEGYGFIEFISHAAAERTLQTYNGTQMPGTELTFRLNWASF-GSGQKVDAGP--- 114
Query: 204 NNNRDFVDSSHKIYAGNLGWRVSSQDLKDVF-AEQPGLVSAKVIYERDSGRSRGFGFVTF 262
H I+ G+L V+ L++ F + AKV+ + +GRS+G+GFV F
Sbjct: 115 ---------DHSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKF 165
Query: 263 ETAQDVEAALKTMNGVEVQGRELRLNLAAVK 293
+ A+ MNG+ R +R++ A K
Sbjct: 166 AEESERNRAMAEMNGLYCSTRPMRISAATPK 196
>AT5G19350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6518978-6521295 FORWARD LENGTH=425
Length = 425
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 104/211 (49%), Gaps = 24/211 (11%)
Query: 86 PEPETETSDKPQQEEEQKVSTSSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYD 145
P+P + PQ EE R L++G+L Y + + LT F + G +VSV+V+ +
Sbjct: 7 PQPPQGSYHHPQTLEEV--------RTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRN 58
Query: 146 RVTDRSRGFAFVTMGSVDDAKEAIRMFDGSQVGGR--IVRVNFPEVPKGGERLVMGPKIR 203
++T + G+ F+ S A+ ++ ++G+Q+ G R+N+ G+++ GP
Sbjct: 59 KITGQPEGYGFIEFISHAAAERTLQTYNGTQMPGTELTFRLNWASF-GSGQKVDAGP--- 114
Query: 204 NNNRDFVDSSHKIYAGNLGWRVSSQDLKDVF-AEQPGLVSAKVIYERDSGRSRGFGFVTF 262
H I+ G+L V+ L++ F + AKV+ + +GRS+G+GFV F
Sbjct: 115 ---------DHSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKF 165
Query: 263 ETAQDVEAALKTMNGVEVQGRELRLNLAAVK 293
+ A+ MNG+ R +R++ A K
Sbjct: 166 AEESERNRAMAEMNGLYCSTRPMRISAATPK 196
>AT3G19130.1 | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47B |
chr3:6611398-6613823 REVERSE LENGTH=435
Length = 435
Score = 84.7 bits (208), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 101/192 (52%), Gaps = 17/192 (8%)
Query: 107 SSDD-RRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDA 165
S DD + L+VG+L + M + L F G V SV+V+ +++T +S G+ FV S A
Sbjct: 103 SGDDVKTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAA 162
Query: 166 KEAIRMFDGSQV--GGRIVRVNFPEVPKGGERLV-MGPKIRNNNRDFVDSSHKIYAGNLG 222
+E ++ + GS + + R+N+ G +R V GP + ++ G+L
Sbjct: 163 EEVLQNYSGSVMPNSDQPFRINWASFSTGEKRAVENGPDL------------SVFVGDLS 210
Query: 223 WRVSSQDLKDVFAEQ-PGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQ 281
V+ L + F+++ P + SAKV+ + ++GRS+G+GFV F + AL MNG
Sbjct: 211 PDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCS 270
Query: 282 GRELRLNLAAVK 293
R++R+ +A K
Sbjct: 271 NRQMRVGIATPK 282
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 89/207 (42%), Gaps = 24/207 (11%)
Query: 101 EQKVSTSSDDRRLYVGNLPYSMTSSQLTEIFVE-AGTVVSVEVMYDRVTDRSRGFAFVTM 159
E++ + D ++VG+L +T L E F + +V S +V+ D T RS+G+ FV
Sbjct: 192 EKRAVENGPDLSVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRF 251
Query: 160 GSVDDAKEAIRMFDGSQVGGRIVRVNFPEVPK----------------GGERLVMGPKIR 203
G ++ A+ +G+ R +RV PK G G
Sbjct: 252 GDENERSRALTEMNGAYCSNRQMRVGI-ATPKRAIANQQQHSSQAVILAGGHGSNGSMGY 310
Query: 204 NNNRDFVDSSHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFE 263
+ D ++ I+ G + V +DL+ F++ +VS K+ +G GFV F
Sbjct: 311 GSQSDGESTNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPV------GKGCGFVQFA 364
Query: 264 TAQDVEAALKTMNGVEVQGRELRLNLA 290
+ E A++++NG + +RL+
Sbjct: 365 DRKSAEDAIESLNGTVIGKNTVRLSWG 391
>AT1G54080.1 | Symbols: UBP1A | oligouridylate-binding protein 1A |
chr1:20183923-20186824 REVERSE LENGTH=426
Length = 426
Score = 84.7 bits (208), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 95/212 (44%), Gaps = 26/212 (12%)
Query: 111 RRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIR 170
R +Y GN+ +T L EIF G + S +++ D+S + FV A AI
Sbjct: 63 RSVYAGNIHTQVTEILLQEIFASTGPIESCKLIRK---DKS-SYGFVHYFDRRCASMAIM 118
Query: 171 MFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSSQDL 230
+G + G+ ++VN+ R+ S I+ G+L V+ L
Sbjct: 119 TLNGRHIFGQPMKVNW--------------AYATGQREDTSSHFNIFVGDLSPEVTDAAL 164
Query: 231 KDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQGRELRLNLA 290
D F+ A+V++++ +GRSRGFGFV+F QD + A+ MNG V R++R N A
Sbjct: 165 FDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWA 224
Query: 291 AVKA--------PSSPSVTEENEGSSVDTSEL 314
A SV E GSS D EL
Sbjct: 225 TKGATFGEDKHSSDGKSVVELTNGSSEDGREL 256
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 94/215 (43%), Gaps = 35/215 (16%)
Query: 107 SSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAK 166
+S ++VG+L +T + L + F + VM+D+ T RSRGF FV+ + DA+
Sbjct: 144 TSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQ 203
Query: 167 EAIRMFDGSQVGGRIVRVNFPEVPKG-----------GERLVM--------GPKIRN--- 204
AI +G V R +R N+ KG G+ +V G ++ N
Sbjct: 204 TAINEMNGKWVSSRQIRCNW--ATKGATFGEDKHSSDGKSVVELTNGSSEDGRELSNEDA 261
Query: 205 --NNRDFVDSSHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTF 262
NN F +Y GNL V+ DL +F + A VI E R +GFGFV +
Sbjct: 262 PENNPQFT----TVYVGNLSPEVTQLDLHRLFYT----LGAGVIEEVRVQRDKGFGFVRY 313
Query: 263 ETAQDVEAALKTMNGVE-VQGRELRLNLAAVKAPS 296
T + A++ N + R++R + PS
Sbjct: 314 NTHDEAALAIQMGNAQPFLFSRQIRCSWGNKPTPS 348
>AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4673027-4675950 FORWARD LENGTH=427
Length = 427
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 97/214 (45%), Gaps = 26/214 (12%)
Query: 111 RRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIR 170
R +YVGN+ +T L EIF G V S +++ D+S + FV A AI
Sbjct: 59 RSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRK---DKS-SYGFVHYFDRRSAALAIL 114
Query: 171 MFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSSQDL 230
+G + G+ ++VN+ R+ S I+ G+L V+ L
Sbjct: 115 SLNGRHLFGQPIKVNW--------------AYATGQREDTSSHFNIFVGDLSPEVTDATL 160
Query: 231 KDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQGRELRLNLA 290
F+ A+V++++ +GRSRGFGFV+F QD + A+ MNG + R++R N A
Sbjct: 161 YQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIRCNWA 220
Query: 291 AVKAPS--------SPSVTEENEGSSVDTSELVS 316
A S SV E GSS D E ++
Sbjct: 221 TKGATSGDDKLSSDGKSVVELTTGSSEDGKETLN 254
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 81/192 (42%), Gaps = 30/192 (15%)
Query: 107 SSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAK 166
+S ++VG+L +T + L + F + VM+D+ T RSRGF FV+ + DA+
Sbjct: 140 TSSHFNIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQ 199
Query: 167 EAIRMFDGSQVGGRIVRVNFPE--VPKGGERL--------------------VMGPKIRN 204
AI +G + R +R N+ G ++L + +
Sbjct: 200 TAINEMNGKWLSSRQIRCNWATKGATSGDDKLSSDGKSVVELTTGSSEDGKETLNEETPE 259
Query: 205 NNRDFVDSSHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFET 264
NN F +Y GNL V+ DL F + A VI E R +GFGFV + T
Sbjct: 260 NNSQFT----TVYVGNLAPEVTQLDLHRYFHA----LGAGVIEEVRVQRDKGFGFVRYNT 311
Query: 265 AQDVEAALKTMN 276
+ A++ N
Sbjct: 312 HPEAALAIQMGN 323
>AT1G47490.2 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47C |
chr1:17424801-17426114 FORWARD LENGTH=310
Length = 310
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 99/192 (51%), Gaps = 16/192 (8%)
Query: 107 SSDDRRLYVGNLPYSMTSSQLTEIFVEAGT--VVSVEVMYDRVTDRSRGFAFVTMGSVDD 164
+ +++ ++VG+L + M + L F +VSV+V+ ++ S G+ FV S D
Sbjct: 97 NGENKTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDV 156
Query: 165 AKEAIRMFDGSQVGG--RIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLG 222
A + +R F+G+ + + R+N+ G +RL NN D I+ G+L
Sbjct: 157 ADKVLREFNGTTMPNTDQPFRLNWASFSTGEKRL------ENNGPDL-----SIFVGDLS 205
Query: 223 WRVSSQDLKDVFAEQ-PGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQ 281
VS L + F+E+ P + +AKV+ + ++GRS+G+GFV F + A+ MNGV+
Sbjct: 206 PDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCS 265
Query: 282 GRELRLNLAAVK 293
R +R+ A +
Sbjct: 266 SRAMRIGPATPR 277
>AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 93/187 (49%), Gaps = 16/187 (8%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMF 172
LYVG+L ++T SQL E F +AG VVSV V D T RS G+ +V + DA A+
Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 106
Query: 173 DGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSSQDLKD 232
+ + GR +RV + V P +R + I+ NL + + L +
Sbjct: 107 NFMALNGRAIRVMYS---------VRDPSLRKS------GVGNIFIKNLDKSIDHKALHE 151
Query: 233 VFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQGRELRLNLAAV 292
F+ ++S KV + SG+S+G+GFV ++T + + A+ +NG+ + +++ +
Sbjct: 152 TFSAFGPILSCKVAVD-PSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVH 210
Query: 293 KAPSSPS 299
K PS
Sbjct: 211 KLQRDPS 217
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 89/185 (48%), Gaps = 9/185 (4%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMF 172
+YV NL S++ +L ++F E G S +M D +S+GF FV + DDA A+
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDG-EGKSKGFGFVNFENSDDAARAVDAL 284
Query: 173 DGSQVGGRIVRVNFPEVPKGGERLV-MGPKIRNNNRDFVDSSH--KIYAGNLGWRVSSQD 229
+G + V + K ER + K + ++ D S +Y NL V+
Sbjct: 285 NGKTFDDKEWFVG--KAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDK 342
Query: 230 LKDVFAEQPGLVSAKVIYERD-SGRSRGFGFVTFETAQDVEAALKTMNGVEVQGRELRLN 288
L++ FA + S KV+ RD SG SRG GFV F T ++ A+ MNG + + L +
Sbjct: 343 LREHFAPFGTITSCKVM--RDPSGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVA 400
Query: 289 LAAVK 293
LA K
Sbjct: 401 LAQRK 405
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 83/165 (50%), Gaps = 13/165 (7%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMF 172
+++ NL S+ L E F G ++S +V D + +S+G+ FV + + A+ AI
Sbjct: 135 IFIKNLDKSIDHKALHETFSAFGPILSCKVAVDP-SGQSKGYGFVQYDTDEAAQGAIDKL 193
Query: 173 DGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSSQDLKD 232
+G + + V V P V K +R G K++ N +Y NL +S ++L
Sbjct: 194 NGMLLNDKQVYVG-PFVHKL-QRDPSGEKVKFTN---------VYVKNLSESLSDEELNK 242
Query: 233 VFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNG 277
VF E G+ ++ VI G+S+GFGFV FE + D A+ +NG
Sbjct: 243 VFGEF-GVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNG 286
>AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 93/187 (49%), Gaps = 16/187 (8%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMF 172
LYVG+L ++T SQL E F +AG VVSV V D T RS G+ +V + DA A+
Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 106
Query: 173 DGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSSQDLKD 232
+ + GR +RV + V P +R + I+ NL + + L +
Sbjct: 107 NFMALNGRAIRVMYS---------VRDPSLRKS------GVGNIFIKNLDKSIDHKALHE 151
Query: 233 VFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQGRELRLNLAAV 292
F+ ++S KV + SG+S+G+GFV ++T + + A+ +NG+ + +++ +
Sbjct: 152 TFSAFGPILSCKVAVD-PSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVH 210
Query: 293 KAPSSPS 299
K PS
Sbjct: 211 KLQRDPS 217
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 89/185 (48%), Gaps = 9/185 (4%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMF 172
+YV NL S++ +L ++F E G S +M D +S+GF FV + DDA A+
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDG-EGKSKGFGFVNFENSDDAARAVDAL 284
Query: 173 DGSQVGGRIVRVNFPEVPKGGERLV-MGPKIRNNNRDFVDSSH--KIYAGNLGWRVSSQD 229
+G + V + K ER + K + ++ D S +Y NL V+
Sbjct: 285 NGKTFDDKEWFVG--KAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDK 342
Query: 230 LKDVFAEQPGLVSAKVIYERD-SGRSRGFGFVTFETAQDVEAALKTMNGVEVQGRELRLN 288
L++ FA + S KV+ RD SG SRG GFV F T ++ A+ MNG + + L +
Sbjct: 343 LREHFAPFGTITSCKVM--RDPSGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVA 400
Query: 289 LAAVK 293
LA K
Sbjct: 401 LAQRK 405
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 83/165 (50%), Gaps = 13/165 (7%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMF 172
+++ NL S+ L E F G ++S +V D + +S+G+ FV + + A+ AI
Sbjct: 135 IFIKNLDKSIDHKALHETFSAFGPILSCKVAVDP-SGQSKGYGFVQYDTDEAAQGAIDKL 193
Query: 173 DGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSSQDLKD 232
+G + + V V P V K +R G K++ N +Y NL +S ++L
Sbjct: 194 NGMLLNDKQVYVG-PFVHKL-QRDPSGEKVKFTN---------VYVKNLSESLSDEELNK 242
Query: 233 VFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNG 277
VF E G+ ++ VI G+S+GFGFV FE + D A+ +NG
Sbjct: 243 VFGEF-GVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNG 286
>AT1G11650.1 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr1:3914895-3917301 FORWARD
LENGTH=306
Length = 306
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 101/204 (49%), Gaps = 19/204 (9%)
Query: 96 PQQEEEQKVSTSSDD--RRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRG 153
PQ V ++ D R L++G+L Y M + L F G +VS +V+ ++ T + G
Sbjct: 45 PQAAAPPSVQPTTADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEG 104
Query: 154 FAFVTMGSVDDAKEAIRMFDGSQVGG---RIVRVNFPEVPKGGERLVMGPKIRNNNRDFV 210
+ F+ S A+ ++ F+ + + ++ R+N+ + G +R +++ D+
Sbjct: 105 YGFIEFASHAAAERVLQTFNNAPIPSFPDQLFRLNWASLSSGDKR--------DDSPDYT 156
Query: 211 DSSHKIYAGNLGWRVSSQDLKDVF-AEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVE 269
I+ G+L V+ L + F A P + AKV+ +R +GR++G+GFV F +
Sbjct: 157 -----IFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQI 211
Query: 270 AALKTMNGVEVQGRELRLNLAAVK 293
A+ MNGV R +R+ AA K
Sbjct: 212 RAMTEMNGVPCSTRPMRIGPAASK 235
>AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |
chr2:9943209-9946041 FORWARD LENGTH=662
Length = 662
Score = 81.6 bits (200), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 87/165 (52%), Gaps = 16/165 (9%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMF 172
LYVG+L +++T SQL + F E VVSV V D T+ S G+ +V + DDA++A++
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKL 107
Query: 173 DGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSSQDLKD 232
+ S + G+++R+ + R +G ++ NL V ++ L +
Sbjct: 108 NYSYLNGKMIRITYSSRDSSARRSGVG---------------NLFVKNLDKSVDNKTLHE 152
Query: 233 VFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNG 277
F+ +VS KV + G+SRG+GFV F+T + A++ +NG
Sbjct: 153 AFSGCGTIVSCKVATDH-MGQSRGYGFVQFDTEDSAKNAIEKLNG 196
Score = 77.8 bits (190), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 88/185 (47%), Gaps = 19/185 (10%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMF 172
L+V NL S+ + L E F GT+VS +V D + +SRG+ FV + D AK AI
Sbjct: 136 LFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHM-GQSRGYGFVQFDTEDSAKNAIEKL 194
Query: 173 DGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHK---IYAGNLGWRVSSQD 229
+G + + ++ +GP +R R+ K +Y NL + +
Sbjct: 195 NGKVLNDK--------------QIFVGPFLRKEERESAADKMKFTNVYVKNLSEATTDDE 240
Query: 230 LKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQGRELRLNL 289
LK F Q G +S+ V+ G+SR FGFV FE +D A++ +NG + +E +
Sbjct: 241 LKTTFG-QYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVGK 299
Query: 290 AAVKA 294
A K+
Sbjct: 300 AQKKS 304
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 95/201 (47%), Gaps = 9/201 (4%)
Query: 97 QQEEEQKVSTSSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAF 156
++EE + + +YV NL + T +L F + G++ S VM D +SR F F
Sbjct: 211 RKEERESAADKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDG-DGKSRCFGF 269
Query: 157 VTMGSVDDAKEAIRMFDGSQVGGRIVRVNFPEVPKGGER-LVMGPKIRNNNRDFVDS--S 213
V + +DA A+ +G + + V + K ER L + + + D +
Sbjct: 270 VNFENPEDAARAVEALNGKKFDDKEWYVG--KAQKKSERELELSRRYEQGSSDGGNKFDG 327
Query: 214 HKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERD-SGRSRGFGFVTFETAQDVEAAL 272
+Y NL V+ + L+++FAE + S KV+ RD SG S+G GFV F A + L
Sbjct: 328 LNLYVKNLDDTVTDEKLRELFAEFGTITSCKVM--RDPSGTSKGSGFVAFSAASEASRVL 385
Query: 273 KTMNGVEVQGRELRLNLAAVK 293
MNG V G+ L + LA K
Sbjct: 386 NEMNGKMVGGKPLYVALAQRK 406
>AT1G47490.1 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47C |
chr1:17424801-17427182 FORWARD LENGTH=432
Length = 432
Score = 81.3 bits (199), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 99/192 (51%), Gaps = 16/192 (8%)
Query: 107 SSDDRRLYVGNLPYSMTSSQLTEIFVEAGT--VVSVEVMYDRVTDRSRGFAFVTMGSVDD 164
+ +++ ++VG+L + M + L F +VSV+V+ ++ S G+ FV S D
Sbjct: 97 NGENKTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDV 156
Query: 165 AKEAIRMFDGSQVGG--RIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLG 222
A + +R F+G+ + + R+N+ G +RL NN D I+ G+L
Sbjct: 157 ADKVLREFNGTTMPNTDQPFRLNWASFSTGEKRL------ENNGPDL-----SIFVGDLS 205
Query: 223 WRVSSQDLKDVFAEQ-PGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQ 281
VS L + F+E+ P + +AKV+ + ++GRS+G+GFV F + A+ MNGV+
Sbjct: 206 PDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCS 265
Query: 282 GRELRLNLAAVK 293
R +R+ A +
Sbjct: 266 SRAMRIGPATPR 277
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 98/206 (47%), Gaps = 18/206 (8%)
Query: 101 EQKVSTSSDDRRLYVGNLPYSMTSSQLTEIFVEA-GTVVSVEVMYDRVTDRSRGFAFVTM 159
E+++ + D ++VG+L ++ + L E F E +V + +V+ D T RS+G+ FV
Sbjct: 187 EKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRF 246
Query: 160 GSVDDAKEAIRMFDGSQVGGRIVRVNFPEVPKG-------GERLVMGPKIRNNNRDFVDS 212
G ++ +A+ +G + R +R+ P P+ G + G R D +++
Sbjct: 247 GDENERTKAMTEMNGVKCSSRAMRIG-PATPRKTNGYQQQGGYMPNGTLTRPEG-DIMNT 304
Query: 213 SHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAAL 272
+ I+ G L V+ +DLK F E +VS K+ +G GFV F + E AL
Sbjct: 305 T--IFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPV------GKGCGFVQFVNRPNAEEAL 356
Query: 273 KTMNGVEVQGRELRLNLAAVKAPSSP 298
+ +NG + + +RL+ A P
Sbjct: 357 EKLNGTVIGKQTVRLSWGRNPANKQP 382
>AT1G11650.2 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr1:3914895-3917941 FORWARD
LENGTH=405
Length = 405
Score = 81.3 bits (199), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 99/193 (51%), Gaps = 17/193 (8%)
Query: 105 STSSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDD 164
+T+ + R L++G+L Y M + L F G +VS +V+ ++ T + G+ F+ S
Sbjct: 56 TTADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAA 115
Query: 165 AKEAIRMFDGSQVGG---RIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNL 221
A+ ++ F+ + + ++ R+N+ + G +R +++ D+ I+ G+L
Sbjct: 116 AERVLQTFNNAPIPSFPDQLFRLNWASLSSGDKR--------DDSPDYT-----IFVGDL 162
Query: 222 GWRVSSQDLKDVF-AEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEV 280
V+ L + F A P + AKV+ +R +GR++G+GFV F + A+ MNGV
Sbjct: 163 AADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPC 222
Query: 281 QGRELRLNLAAVK 293
R +R+ AA K
Sbjct: 223 STRPMRIGPAASK 235
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 90/193 (46%), Gaps = 11/193 (5%)
Query: 108 SDDRRLYVGNLPYSMTSSQLTEIF-VEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAK 166
S D ++VG+L +T L E F +V +V+ DRVT R++G+ FV +
Sbjct: 152 SPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQI 211
Query: 167 EAIRMFDGSQVGGRIVRVNFPEVPKG--GERLVMGPKIRNNNRDFVDSSHKIYAGNLGWR 224
A+ +G R +R+ KG G+R D ++ ++ G L
Sbjct: 212 RAMTEMNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGLDAS 271
Query: 225 VSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQGRE 284
V+ LK+VF++ +V K+ +G+ GFV F E AL+ +NGV++ G
Sbjct: 272 VTDDHLKNVFSQYGEIVHVKI----PAGKR--CGFVQFSEKSCAEEALRMLNGVQLGGTT 325
Query: 285 LRLNLAAVKAPSS 297
+RL+ ++PS+
Sbjct: 326 VRLSWG--RSPSN 336
>AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding
protein 2 | chr4:16336732-16339892 FORWARD LENGTH=629
Length = 629
Score = 81.3 bits (199), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 91/173 (52%), Gaps = 16/173 (9%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMF 172
LYVG+L +++T SQL + F + GTVV+V V D VT RS G+ +V + DA AI+
Sbjct: 38 LYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQEL 97
Query: 173 DGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSSQDLKD 232
+ + G+ +RV + P +R + + I+ NL + + L D
Sbjct: 98 NYIPLYGKPIRVMYSH---------RDPSVRRS------GAGNIFIKNLDESIDHKALHD 142
Query: 233 VFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQGREL 285
F+ +VS KV + SG+S+G+GFV + + + A++ +NG+ + +++
Sbjct: 143 TFSSFGNIVSCKVAVD-SSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQV 194
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 91/185 (49%), Gaps = 19/185 (10%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMF 172
+++ NL S+ L + F G +VS +V D + +S+G+ FV + + A++AI
Sbjct: 126 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDS-SGQSKGYGFVQYANEESAQKAIEKL 184
Query: 173 DGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHK---IYAGNLGWRVSSQD 229
+G + + V V GP +R RD + K +Y NL + D
Sbjct: 185 NGMLLNDKQVYV--------------GPFLRRQERDSTANKTKFTNVYVKNLAESTTDDD 230
Query: 230 LKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQGRELRLNL 289
LK+ F E G +++ V+ + G+S+GFGFV FE A D A++++NG + +E +
Sbjct: 231 LKNAFGEY-GKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGR 289
Query: 290 AAVKA 294
A K+
Sbjct: 290 AQKKS 294
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 90/185 (48%), Gaps = 9/185 (4%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMF 172
+YV NL S T L F E G + S VM D +S+GF FV + DDA A+
Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDG-EGKSKGFGFVNFENADDAARAVESL 275
Query: 173 DGSQVGGRIVRVNFPEVPKGGERLV-MGPKIRNNNRDFVDS--SHKIYAGNLGWRVSSQD 229
+G + + V K ER + + N ++ D S +Y NL +S +
Sbjct: 276 NGHKFDDKEWYVG--RAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEK 333
Query: 230 LKDVFAEQPGLVSAKVIYERD-SGRSRGFGFVTFETAQDVEAALKTMNGVEVQGRELRLN 288
LK++F+ + S+KV+ RD +G S+G GFV F T ++ A+ ++G ++ + L +
Sbjct: 334 LKEIFSPFGTVTSSKVM--RDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVA 391
Query: 289 LAAVK 293
+A K
Sbjct: 392 IAQRK 396
>AT1G17370.2 | Symbols: UBP1B | oligouridylate binding protein 1B |
chr1:5951842-5954825 REVERSE LENGTH=416
Length = 416
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 93/210 (44%), Gaps = 26/210 (12%)
Query: 111 RRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIR 170
R +YVGN+ +T L E+F G V S ++ + + FV A AI
Sbjct: 54 RSVYVGNIHIQVTEPLLQEVFAGTGPVESCKL----IRKEKSSYGFVHYFDRRSAGLAIL 109
Query: 171 MFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSSQDL 230
+G + G+ ++VN+ + R+ S I+ G+L V+ L
Sbjct: 110 SLNGRHLFGQPIKVNW--------------AYASGQREDTSSHFNIFVGDLSPEVTDAML 155
Query: 231 KDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQGRELRLNLA 290
F+ P A+V++++ +GRSRGFGFV+F QD + A+ + G + R++R N A
Sbjct: 156 FTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWA 215
Query: 291 AVKAPS--------SPSVTEENEGSSVDTS 312
A S S SV E G DT+
Sbjct: 216 TKGATSGEDKQSSDSKSVVELTSGDGKDTT 245
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 90/212 (42%), Gaps = 32/212 (15%)
Query: 107 SSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAK 166
+S ++VG+L +T + L F T VM+D+ T RSRGF FV+ + DA+
Sbjct: 135 TSSHFNIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQ 194
Query: 167 EAIRMFDGSQVGGRIVRVNFP-------------------EVPKGGERLVMGPKIRNNNR 207
AI G +G R +R N+ E+ G + + NN
Sbjct: 195 TAIDEITGKWLGSRQIRCNWATKGATSGEDKQSSDSKSVVELTSGDGKDTTNGEAPENNA 254
Query: 208 DFVDSSHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQD 267
+ +Y GNL VS DL F + A VI E R +GFGFV + T
Sbjct: 255 QYT----TVYVGNLAPEVSQVDLHRHFHS----LGAGVIEEVRVQRDKGFGFVRYST--H 304
Query: 268 VEAALKTMNG---VEVQGRELRLNLAAVKAPS 296
VEAAL G + GR+++ + + P+
Sbjct: 305 VEAALAIQMGNTHSYLSGRQMKCSWGSKPTPA 336
>AT4G09040.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:5795075-5797315 REVERSE LENGTH=304
Length = 304
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 93/180 (51%), Gaps = 15/180 (8%)
Query: 112 RLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRM 171
RL N+P++ T + +F + G+V+ +E+ + +R+RG F+ M S ++A A++
Sbjct: 95 RLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHK-KERNRGLVFIEMASPEEAATALKS 153
Query: 172 FDGSQVGGRIVRVNFPEVPKGGE---RLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSSQ 228
+ + GR ++V++ + K R P N ++ NL + ++
Sbjct: 154 LESCEYEGRRLKVDYAKTKKKKTYAPRETPSPVPTFN----------LFVANLAFEARAK 203
Query: 229 DLKDVF-AEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQGRELRL 287
LK+ F A+ +VS +VI+ + RS G+GFV+F+T + EAAL G + GR +RL
Sbjct: 204 HLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEFQGKDFLGRPIRL 263
>AT1G54080.2 | Symbols: UBP1A | oligouridylate-binding protein 1A |
chr1:20183923-20186824 REVERSE LENGTH=430
Length = 430
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/216 (30%), Positives = 96/216 (44%), Gaps = 30/216 (13%)
Query: 111 RRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIR 170
R +Y GN+ +T L EIF G + S +++ D+S + FV A AI
Sbjct: 63 RSVYAGNIHTQVTEILLQEIFASTGPIESCKLIRK---DKS-SYGFVHYFDRRCASMAIM 118
Query: 171 MFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSSQDL 230
+G + G+ ++VN+ R+ S I+ G+L V+ L
Sbjct: 119 TLNGRHIFGQPMKVNW--------------AYATGQREDTSSHFNIFVGDLSPEVTDAAL 164
Query: 231 KDVFAEQPGLVS----AKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQGRELR 286
D F+ S A+V++++ +GRSRGFGFV+F QD + A+ MNG V R++R
Sbjct: 165 FDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIR 224
Query: 287 LNLAAVKA--------PSSPSVTEENEGSSVDTSEL 314
N A A SV E GSS D EL
Sbjct: 225 CNWATKGATFGEDKHSSDGKSVVELTNGSSEDGREL 260
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 95/219 (43%), Gaps = 39/219 (17%)
Query: 107 SSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVS----VEVMYDRVTDRSRGFAFVTMGSV 162
+S ++VG+L +T + L + F + S VM+D+ T RSRGF FV+ +
Sbjct: 144 TSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQ 203
Query: 163 DDAKEAIRMFDGSQVGGRIVRVNFPEVPKG-----------GERLVM--------GPKIR 203
DA+ AI +G V R +R N+ KG G+ +V G ++
Sbjct: 204 QDAQTAINEMNGKWVSSRQIRCNW--ATKGATFGEDKHSSDGKSVVELTNGSSEDGRELS 261
Query: 204 N-----NNRDFVDSSHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFG 258
N NN F +Y GNL V+ DL +F + A VI E R +GFG
Sbjct: 262 NEDAPENNPQFT----TVYVGNLSPEVTQLDLHRLFYT----LGAGVIEEVRVQRDKGFG 313
Query: 259 FVTFETAQDVEAALKTMNGVE-VQGRELRLNLAAVKAPS 296
FV + T + A++ N + R++R + PS
Sbjct: 314 FVRYNTHDEAALAIQMGNAQPFLFSRQIRCSWGNKPTPS 352
>AT4G09040.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:5795075-5797193 REVERSE LENGTH=244
Length = 244
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 93/180 (51%), Gaps = 15/180 (8%)
Query: 112 RLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRM 171
RL N+P++ T + +F + G+V+ +E+ + +R+RG F+ M S ++A A++
Sbjct: 35 RLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHK-KERNRGLVFIEMASPEEAATALKS 93
Query: 172 FDGSQVGGRIVRVNFPEVPKGGE---RLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSSQ 228
+ + GR ++V++ + K R P N ++ NL + ++
Sbjct: 94 LESCEYEGRRLKVDYAKTKKKKTYAPRETPSPVPTFN----------LFVANLAFEARAK 143
Query: 229 DLKDVF-AEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQGRELRL 287
LK+ F A+ +VS +VI+ + RS G+GFV+F+T + EAAL G + GR +RL
Sbjct: 144 HLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEFQGKDFLGRPIRL 203
>AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:13445552-13447592 FORWARD LENGTH=455
Length = 455
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 103/209 (49%), Gaps = 19/209 (9%)
Query: 100 EEQKVSTSSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTM 159
EEQK+ ++SD +L++G + + +L E F + G +V +M DR T R+RGF F+
Sbjct: 4 EEQKMESASDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVF 63
Query: 160 GSVDDAKEAIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSH----- 214
A+ I D + GR V VP+ ++++ K + + SH
Sbjct: 64 ADPSVAERVI--MDKHIIDGRTVEAK-KAVPRDDQQVL---KRHASPMHLISPSHGGNGG 117
Query: 215 -----KIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVE 269
KI+ G L ++ + K+ F + + V+Y+ ++ R RGFGF+TF++ + V+
Sbjct: 118 GARTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVD 177
Query: 270 AAL-KTMNGVEVQGRELRLNLAAVKAPSS 297
L KT + E+ G+ + + A K SS
Sbjct: 178 MVLHKTFH--ELNGKMVEVKRAVPKELSS 204
>AT1G17370.1 | Symbols: UBP1B | oligouridylate binding protein 1B |
chr1:5951842-5954825 REVERSE LENGTH=419
Length = 419
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 92/208 (44%), Gaps = 26/208 (12%)
Query: 111 RRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIR 170
R +YVGN+ +T L E+F G V S ++ + + FV A AI
Sbjct: 54 RSVYVGNIHIQVTEPLLQEVFAGTGPVESCKL----IRKEKSSYGFVHYFDRRSAGLAIL 109
Query: 171 MFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSSQDL 230
+G + G+ ++VN+ + R+ S I+ G+L V+ L
Sbjct: 110 SLNGRHLFGQPIKVNW--------------AYASGQREDTSSHFNIFVGDLSPEVTDAML 155
Query: 231 KDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQGRELRLNLA 290
F+ P A+V++++ +GRSRGFGFV+F QD + A+ + G + R++R N A
Sbjct: 156 FTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWA 215
Query: 291 AVKAPS--------SPSVTEENEGSSVD 310
A S S SV E G S D
Sbjct: 216 TKGATSGEDKQSSDSKSVVELTSGVSED 243
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 90/216 (41%), Gaps = 37/216 (17%)
Query: 107 SSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAK 166
+S ++VG+L +T + L F T VM+D+ T RSRGF FV+ + DA+
Sbjct: 135 TSSHFNIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQ 194
Query: 167 EAIRMFDGSQVGGRIVRVNFPE-----------------------VPKGGERLVMGPKIR 203
AI G +G R +R N+ V + G+ G
Sbjct: 195 TAIDEITGKWLGSRQIRCNWATKGATSGEDKQSSDSKSVVELTSGVSEDGKDTTNGEAPE 254
Query: 204 NNNRDFVDSSHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFE 263
NN + +Y GNL VS DL F + A VI E R +GFGFV +
Sbjct: 255 NNAQYTT-----VYVGNLAPEVSQVDLHRHFHS----LGAGVIEEVRVQRDKGFGFVRYS 305
Query: 264 TAQDVEAALKTMNG---VEVQGRELRLNLAAVKAPS 296
T VEAAL G + GR+++ + + P+
Sbjct: 306 T--HVEAALAIQMGNTHSYLSGRQMKCSWGSKPTPA 339
>AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 |
chr2:15361476-15364398 REVERSE LENGTH=609
Length = 609
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 94/182 (51%), Gaps = 3/182 (1%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMF 172
LY+ NL ++ L E F E G +VS+ + D RG+AFV + +DA+ A
Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDE-NRLCRGYAFVNFDNPEDARRAAETV 261
Query: 173 DGSQVGGRIVRVNFPEVPKGGERLVMGP-KIRNNNRDFVDSSHKIYAGNLGWRVSSQDLK 231
+G++ G + + V + E+L+ K ++ + + IY N+ V+ ++L+
Sbjct: 262 NGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELR 321
Query: 232 DVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQGRELRLNLAA 291
F++ + S K++ + + G+S+GFGFV F T ++ A+KT +G G+ L + +A
Sbjct: 322 KHFSQCGTITSTKLMCD-EKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQ 380
Query: 292 VK 293
K
Sbjct: 381 KK 382
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 84/173 (48%), Gaps = 16/173 (9%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMF 172
LYVG+L S+T L + F E ++ SV + D + RS + + S DA AI
Sbjct: 26 LYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKK 85
Query: 173 DGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSSQDLKD 232
+ S + G+++RV + V P R N ++ NL V++ L+D
Sbjct: 86 NNSLLNGKMIRVMWS---------VRAPDARRNGVG------NVFVKNLPESVTNAVLQD 130
Query: 233 VFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQGREL 285
+F + +VS KV D G+SRG+GFV FE AA++T+N V +E+
Sbjct: 131 MFKKFGNIVSCKVATLED-GKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEI 182
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 52/90 (57%), Gaps = 4/90 (4%)
Query: 95 KPQQEEEQKVSTSSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGF 154
K + EE++ ++ S+ +YV N+ ++T +L + F + GT+ S ++M D +S+GF
Sbjct: 291 KEKHEEQKMIAKVSN---IYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDE-KGKSKGF 346
Query: 155 AFVTMGSVDDAKEAIRMFDGSQVGGRIVRV 184
FV + ++A +A++ F G G+ + V
Sbjct: 347 GFVCFSTPEEAIDAVKTFHGQMFHGKPLYV 376
>AT1G47500.1 | Symbols: ATRBP47C', RBP47C' | RNA-binding protein
47C' | chr1:17432682-17434805 FORWARD LENGTH=434
Length = 434
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 102/200 (51%), Gaps = 22/200 (11%)
Query: 107 SSDDRRLYVGNLPYSMTSSQLTEIF--VEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDD 164
+ +++ ++VG+L M + L F E +VS++V+ ++ S G+ FV S D
Sbjct: 99 NGENKTIWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDV 158
Query: 165 AKEAIRMFDGSQVGG--RIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLG 222
A + ++ F+G+ + + R+N+ G +RL NN D I+ G+L
Sbjct: 159 ADKVLQEFNGAPMPNTDQPFRLNWASFSTGEKRL------ENNGPDL-----SIFVGDLA 207
Query: 223 WRVSSQDLKDVFAEQ-PGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQ 281
VS L + F+E+ P + +AKV+ + ++GRS+G+GFV F + A+ MNGV+
Sbjct: 208 PDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCS 267
Query: 282 GRELRLNLAAVKAPSSPSVT 301
R +R+ P++P T
Sbjct: 268 SRAMRI------GPATPRKT 281
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 100/206 (48%), Gaps = 18/206 (8%)
Query: 101 EQKVSTSSDDRRLYVGNLPYSMTSSQLTEIFVEA-GTVVSVEVMYDRVTDRSRGFAFVTM 159
E+++ + D ++VG+L ++ + L E F E +V + +V+ D T RS+G+ FV
Sbjct: 189 EKRLENNGPDLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRF 248
Query: 160 GSVDDAKEAIRMFDGSQVGGRIVRVNFPEVPKG-------GERLVMGPKIRNNNRDFVDS 212
G ++ +A+ +G + R +R+ P P+ G + G R+ D +++
Sbjct: 249 GDENERTKAMTEMNGVKCSSRAMRIG-PATPRKTNGYQQQGGYMPSGAFTRSEG-DTINT 306
Query: 213 SHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAAL 272
+ I+ G L V+ +DLK F+E +VS K+ +G GFV F + E AL
Sbjct: 307 T--IFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPV------GKGCGFVQFVNRPNAEEAL 358
Query: 273 KTMNGVEVQGRELRLNLAAVKAPSSP 298
+ +NG + + +RL+ A P
Sbjct: 359 EKLNGTVIGKQTVRLSWGRNPANKQP 384
>AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:16225483-16227423 FORWARD LENGTH=423
Length = 423
Score = 78.2 bits (191), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 107/230 (46%), Gaps = 25/230 (10%)
Query: 83 NPEPEPETETSD-KPQQEEEQKVSTSSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVE 141
+P+P + E D K Q V ++ +++VG L TS++ + F + G +
Sbjct: 16 DPKPSEDIEDDDDKSQPHSGGGVDSAG---KIFVGGLARETTSAEFLKHFGKYGEITDSV 72
Query: 142 VMYDRVTDRSRGFAFVTMGS---VDDAKEAIRMFDGSQVGGRIVRVNFPEVPKGGERLVM 198
+M DR T + RGF FVT VD + + G QV I R +P+G
Sbjct: 73 IMKDRKTGQPRGFGFVTYADSSVVDKVIQDNHIIIGKQV--EIKRT----IPRG------ 120
Query: 199 GPKIRNNNRDFVDSSHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFG 258
++ DF + KI+ G + V + K+ F + L +++ + +GRSRGFG
Sbjct: 121 ----SMSSNDF--KTKKIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFG 174
Query: 259 FVTFETAQDVEAALKTMNGVEVQGRELRLNLAAVKAPSSPSVTEENEGSS 308
FVT+E+ V+ L N +E+ G ++ + A K P+S + + G S
Sbjct: 175 FVTYESEDMVDHLLAKGNRIELSGTQVEIKKAEPKKPNSVTTPSKRFGDS 224
>AT4G26650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:13445265-13447592 FORWARD LENGTH=452
Length = 452
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 102/208 (49%), Gaps = 19/208 (9%)
Query: 101 EQKVSTSSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMG 160
EQK+ ++SD +L++G + + +L E F + G +V +M DR T R+RGF F+
Sbjct: 2 EQKMESASDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFA 61
Query: 161 SVDDAKEAIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSH------ 214
A+ I D + GR V VP+ ++++ K + + SH
Sbjct: 62 DPSVAERVI--MDKHIIDGRTVEAK-KAVPRDDQQVL---KRHASPMHLISPSHGGNGGG 115
Query: 215 ----KIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEA 270
KI+ G L ++ + K+ F + + V+Y+ ++ R RGFGF+TF++ + V+
Sbjct: 116 ARTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDM 175
Query: 271 AL-KTMNGVEVQGRELRLNLAAVKAPSS 297
L KT + E+ G+ + + A K SS
Sbjct: 176 VLHKTFH--ELNGKMVEVKRAVPKELSS 201
>AT1G49600.1 | Symbols: ATRBP47A, RBP47A | RNA-binding protein 47A |
chr1:18357236-18360150 REVERSE LENGTH=445
Length = 445
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 95/193 (49%), Gaps = 16/193 (8%)
Query: 105 STSSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDD 164
S D + L+VG+L + M + L F V SV+V+ ++ T +S G+ FV S
Sbjct: 113 SGGDDVKTLWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSA 172
Query: 165 AKEAIRMFDGSQV--GGRIVRVNFPEVPKGGERLV-MGPKIRNNNRDFVDSSHKIYAGNL 221
A+EA++ F G + + R+N+ G +R GP + I+ G+L
Sbjct: 173 AEEALQSFSGVTMPNAEQPFRLNWASFSTGEKRASENGPDL------------SIFVGDL 220
Query: 222 GWRVSSQDLKDVFAEQ-PGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEV 280
VS L + FA + P + AKV+ + ++GRS+G+GFV F + A+ MNG
Sbjct: 221 APDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFC 280
Query: 281 QGRELRLNLAAVK 293
R++R+ +A K
Sbjct: 281 SSRQMRVGIATPK 293
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 91/204 (44%), Gaps = 23/204 (11%)
Query: 101 EQKVSTSSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVE---VMYDRVTDRSRGFAFV 157
E++ S + D ++VG+L ++ + L E F AG SV+ V+ D T RS+G+ FV
Sbjct: 203 EKRASENGPDLSIFVGDLAPDVSDAVLLETF--AGRYPSVKGAKVVIDSNTGRSKGYGFV 260
Query: 158 TMGSVDDAKEAIRMFDGSQVGGRIVRVNFPEVPK---------GGERLVMGPKIRNNNR- 207
G ++ A+ +G+ R +RV PK G + L + N
Sbjct: 261 RFGDENERSRAMTEMNGAFCSSRQMRVGI-ATPKRAAAYGQQNGSQALTLAGGHGGNGSM 319
Query: 208 -DFVDSSHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQ 266
D ++ I+ G L V+ +DL F++ +VS K+ +G GFV F Q
Sbjct: 320 SDGESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIPV------GKGCGFVQFANRQ 373
Query: 267 DVEAALKTMNGVEVQGRELRLNLA 290
E A+ +NG + +RL+
Sbjct: 374 SAEEAIGNLNGTVIGKNTVRLSWG 397
>AT5G06210.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) family
protein | chr5:1878497-1879515 FORWARD LENGTH=146
Length = 146
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 58/94 (61%), Gaps = 5/94 (5%)
Query: 112 RLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRM 171
+L++G L + T L+E F + G VV +++ DRV+DRS+GF FVT S D+A++A+
Sbjct: 35 KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALME 94
Query: 172 FDGSQVGGRIVRVNFPEVPK-----GGERLVMGP 200
F+G Q+ GR + V++ + + GG + GP
Sbjct: 95 FNGQQLNGRTIFVDYAKAKQSLGGGGGYPIARGP 128
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 50/81 (61%)
Query: 213 SHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAAL 272
+ K++ G L + + Q L + F++ +V A+++ +R S RS+GFGFVTF +A + + AL
Sbjct: 33 ASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKAL 92
Query: 273 KTMNGVEVQGRELRLNLAAVK 293
NG ++ GR + ++ A K
Sbjct: 93 MEFNGQQLNGRTIFVDYAKAK 113
>AT3G55340.1 | Symbols: PHIP1 | phragmoplastin interacting protein 1
| chr3:20515672-20517832 FORWARD LENGTH=597
Length = 597
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 92/192 (47%), Gaps = 16/192 (8%)
Query: 112 RLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRM 171
+LYVG +PY T ++ F G ++ V+ G AF+T + D AK A+
Sbjct: 162 KLYVGGIPYQSTEDEIRSYFRSCGVIIKVDCKMRPEDGAFSGIAFITFDTEDGAKRAL-A 220
Query: 172 FDGSQVGGR------IVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRV 225
FD + +G R V+ P +P+ P++ VD +++Y GNL W
Sbjct: 221 FDRAAMGDRYLTIQQYVKTTTPSIPRRKTSSGFAPEM-------VDGYNRVYIGNLAWDT 273
Query: 226 SSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQGREL 285
+ +D++ +F++ + S ++ +++G +G+ V F+ + V ALK V + GR +
Sbjct: 274 TERDIRKLFSDCV-INSVRLGKNKETGEFKGYAHVDFKDSVSVAIALKLDQQV-ICGRPV 331
Query: 286 RLNLAAVKAPSS 297
++ A P++
Sbjct: 332 KICCALKDRPAT 343
>AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256621 FORWARD LENGTH=358
Length = 358
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 98/207 (47%), Gaps = 22/207 (10%)
Query: 112 RLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGS---VDDAKEA 168
++++G L T++ + F + G + +M DR T + RGF F+T VD E
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED 79
Query: 169 IRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSSQ 228
+ +G QV I R +PKG N ++D + KI+ G + V+
Sbjct: 80 THVINGKQV--EIKRT----IPKGAGG--------NQSKDI--KTKKIFVGGIPSTVTED 123
Query: 229 DLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQGRELRLN 288
+LKD FA+ +V +VI + ++ RSRGFGFV F++ + V+ L N +++ ++ +
Sbjct: 124 ELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQVEIK 183
Query: 289 LAAVKAP---SSPSVTEENEGSSVDTS 312
A K S PS G S + S
Sbjct: 184 KAEPKKSLNRSPPSYGSHPRGRSSNDS 210
>AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=144
Length = 144
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 213 SHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAAL 272
S K++ G L W L+D FA +V AKVI +R++GRSRGFGFV F AA+
Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93
Query: 273 KTMNGVEVQGRELRLNLAAVKAPSSP 298
M+G E+ GR +R+N A + PS+P
Sbjct: 94 SEMDGKELNGRHIRVNPANDR-PSAP 118
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 40/74 (54%)
Query: 112 RLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRM 171
+L++G L + + L + F G VV +V+ DR T RSRGF FV A AI
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 172 FDGSQVGGRIVRVN 185
DG ++ GR +RVN
Sbjct: 96 MDGKELNGRHIRVN 109
>AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=153
Length = 153
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 213 SHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAAL 272
S K++ G L W L+D FA +V AKVI +R++GRSRGFGFV F AA+
Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93
Query: 273 KTMNGVEVQGRELRLNLAAVKAPSSP 298
M+G E+ GR +R+N A + PS+P
Sbjct: 94 SEMDGKELNGRHIRVNPANDR-PSAP 118
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 40/74 (54%)
Query: 112 RLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRM 171
+L++G L + + L + F G VV +V+ DR T RSRGF FV A AI
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 172 FDGSQVGGRIVRVN 185
DG ++ GR +RVN
Sbjct: 96 MDGKELNGRHIRVN 109
>AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich
RNA-binding protein 2 | chr4:8021314-8022065 FORWARD
LENGTH=158
Length = 158
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 213 SHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAAL 272
S K++ G L W L+D FA +V AKVI +R++GRSRGFGFV F AA+
Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93
Query: 273 KTMNGVEVQGRELRLNLAAVKAPSSP 298
M+G E+ GR +R+N A + PS+P
Sbjct: 94 SEMDGKELNGRHIRVNPANDR-PSAP 118
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 40/74 (54%)
Query: 112 RLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRM 171
+L++G L + + L + F G VV +V+ DR T RSRGF FV A AI
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 172 FDGSQVGGRIVRVN 185
DG ++ GR +RVN
Sbjct: 96 MDGKELNGRHIRVN 109
>AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495102 FORWARD LENGTH=495
Length = 495
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 94/193 (48%), Gaps = 16/193 (8%)
Query: 108 SDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKE 167
SD+ +L++G + + +L E F G V+ ++ DR T R+RGF FV D A
Sbjct: 3 SDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVF--ADPAVA 60
Query: 168 AIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDS------SHKIYAGNL 221
I + + + GR+V VP+ + +V R+N+ S + KI+ G L
Sbjct: 61 EIVITEKHNIDGRLVEAK-KAVPRDDQNMVN----RSNSSSIQGSPGGPGRTRKIFVGGL 115
Query: 222 GWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAA-LKTMNGVEV 280
V+ D K F + V+Y+ ++ R RGFGF+T+++ + VE LKT + E+
Sbjct: 116 PSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFH--EL 173
Query: 281 QGRELRLNLAAVK 293
G+ + + A K
Sbjct: 174 NGKMVEVKRAVPK 186
>AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256014 FORWARD LENGTH=231
Length = 231
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 89/179 (49%), Gaps = 19/179 (10%)
Query: 112 RLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGS---VDDAKEA 168
++++G L T++ + F + G + +M DR T + RGF F+T VD E
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED 79
Query: 169 IRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSSQ 228
+ +G QV I R +PKG N ++D + KI+ G + V+
Sbjct: 80 THVINGKQV--EIKRT----IPKGAGG--------NQSKDI--KTKKIFVGGIPSTVTED 123
Query: 229 DLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQGRELRL 287
+LKD FA+ +V +VI + ++ RSRGFGFV F++ + V+ L N +++ ++ L
Sbjct: 124 ELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQVSL 182
>AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495052 FORWARD LENGTH=494
Length = 494
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 94/193 (48%), Gaps = 16/193 (8%)
Query: 108 SDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKE 167
SD+ +L++G + + +L E F G V+ ++ DR T R+RGF FV D A
Sbjct: 3 SDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVF--ADPAVA 60
Query: 168 AIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDS------SHKIYAGNL 221
I + + + GR+V VP+ + +V R+N+ S + KI+ G L
Sbjct: 61 EIVITEKHNIDGRLVEAK-KAVPRDDQNMVN----RSNSSSIQGSPGGPGRTRKIFVGGL 115
Query: 222 GWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAA-LKTMNGVEV 280
V+ D K F + V+Y+ ++ R RGFGF+T+++ + VE LKT + E+
Sbjct: 116 PSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFH--EL 173
Query: 281 QGRELRLNLAAVK 293
G+ + + A K
Sbjct: 174 NGKMVEVKRAVPK 186
>AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr4:13554983-13557763 REVERSE
LENGTH=415
Length = 415
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 97/203 (47%), Gaps = 17/203 (8%)
Query: 111 RRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIR 170
R L++G+L M + L +F G + +V+ ++ S G+ F+ + A+ ++
Sbjct: 80 RSLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERNLQ 139
Query: 171 MFDGSQVGG--RIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSSQ 228
++G+ + + R+N+ ++ G R GP+ H ++ G+L V+
Sbjct: 140 TYNGAPMPSSEQAFRLNWAQLGAGERRQAEGPE------------HTVFVGDLAPDVTDH 187
Query: 229 DLKDVF-AEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQGRELRL 287
L + F A + AKV+ +R +GRS+G+GFV F + A+ MNG R +R
Sbjct: 188 MLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRT 247
Query: 288 NLAAVKAPSS--PSVTEENEGSS 308
AA K P + P+ + +G+S
Sbjct: 248 GPAANKKPLTMQPASYQNTQGNS 270
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 88/193 (45%), Gaps = 16/193 (8%)
Query: 110 DRRLYVGNLPYSMTSSQLTEIFVEA-GTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEA 168
+ ++VG+L +T LTE F +V +V+ DR T RS+G+ FV + A
Sbjct: 172 EHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRA 231
Query: 169 IRMFDGSQVGGRIVRVNFPEVPKGGERLVMGP----KIRNNNRDFVDSSHKIYAGNLGWR 224
+ +G R +R P K + L M P + N+ + ++ I+ G +
Sbjct: 232 MTEMNGQYCSSRPMRTG-PAANK--KPLTMQPASYQNTQGNSGESDPTNTTIFVGAVDQS 288
Query: 225 VSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQGRE 284
V+ DLK VF + LV K+ + G FV + E AL +NG ++ G+
Sbjct: 289 VTEDDLKSVFGQFGELVHVKIPAGKRCG------FVQYANRACAEQALSVLNGTQLGGQS 342
Query: 285 LRLNLAAVKAPSS 297
+RL+ ++PS+
Sbjct: 343 IRLSWG--RSPSN 353
>AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=129
Length = 129
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 47/78 (60%)
Query: 213 SHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAAL 272
S K++ G L W L+D FA +V AKVI +R++GRSRGFGFV F AA+
Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93
Query: 273 KTMNGVEVQGRELRLNLA 290
M+G E+ GR +R+N A
Sbjct: 94 SEMDGKELNGRHIRVNPA 111
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 40/74 (54%)
Query: 112 RLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRM 171
+L++G L + + L + F G VV +V+ DR T RSRGF FV A AI
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 172 FDGSQVGGRIVRVN 185
DG ++ GR +RVN
Sbjct: 96 MDGKELNGRHIRVN 109
>AT3G26420.1 | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motifs)
family protein with retrovirus zinc finger-like domain |
chr3:9671953-9673055 FORWARD LENGTH=245
Length = 245
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 57/96 (59%), Gaps = 3/96 (3%)
Query: 211 DSSHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEA 270
D ++ + G L W S + L+D F + LV AKV+ ++ SGRSRGFGF+TF+ + ++
Sbjct: 4 DPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDE 63
Query: 271 ALKTMNGVEVQGRELRLNLAAVKAPSSPSVTEENEG 306
A+ MNG+++ GR + ++ A P +N+G
Sbjct: 64 AIAAMNGMDLDGRTITVDKA---QPHQGGAGRDNDG 96
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 44/82 (53%)
Query: 112 RLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRM 171
R ++G L ++ + L + F + G +V +V+ D+ + RSRGF F+T EAI
Sbjct: 8 RCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAA 67
Query: 172 FDGSQVGGRIVRVNFPEVPKGG 193
+G + GR + V+ + +GG
Sbjct: 68 MNGMDLDGRTITVDKAQPHQGG 89
>AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protein 3
| chr5:24560870-24562152 FORWARD LENGTH=309
Length = 309
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 46/76 (60%)
Query: 112 RLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRM 171
+L++G + YSM L E F + G VV V+ DR T RSRGF FVT S + A AI+
Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQA 100
Query: 172 FDGSQVGGRIVRVNFP 187
DG + GR+V+VN+
Sbjct: 101 LDGRDLHGRVVKVNYA 116
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 53/79 (67%)
Query: 212 SSHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAA 271
SS K++ G + + + L++ F + +V +VI +R++GRSRGFGFVTF +++ +A
Sbjct: 38 SSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSA 97
Query: 272 LKTMNGVEVQGRELRLNLA 290
++ ++G ++ GR +++N A
Sbjct: 98 IQALDGRDLHGRVVKVNYA 116
>AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 46/78 (58%)
Query: 213 SHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAAL 272
S K++ G L W LK F + A VI +R++GRSRGFGFV+F A+
Sbjct: 34 SSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93
Query: 273 KTMNGVEVQGRELRLNLA 290
K M+G E+ GR++R+NLA
Sbjct: 94 KEMDGKELNGRQIRVNLA 111
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 41/76 (53%)
Query: 112 RLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRM 171
+L+VG L + S L + F G V V+ DR T RSRGF FV+ D A AI+
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 172 FDGSQVGGRIVRVNFP 187
DG ++ GR +RVN
Sbjct: 96 MDGKELNGRQIRVNLA 111
>AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 46/78 (58%)
Query: 213 SHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAAL 272
S K++ G L W LK F + A VI +R++GRSRGFGFV+F A+
Sbjct: 34 SSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93
Query: 273 KTMNGVEVQGRELRLNLA 290
K M+G E+ GR++R+NLA
Sbjct: 94 KEMDGKELNGRQIRVNLA 111
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 41/76 (53%)
Query: 112 RLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRM 171
+L+VG L + S L + F G V V+ DR T RSRGF FV+ D A AI+
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 172 FDGSQVGGRIVRVNFP 187
DG ++ GR +RVN
Sbjct: 96 MDGKELNGRQIRVNLA 111
>AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=126
Length = 126
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 52/77 (67%)
Query: 214 HKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALK 273
++ + G L W + +DL+ F++ ++ +K+I +R+SGRSRGFGFVTF+ + + A++
Sbjct: 6 YRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65
Query: 274 TMNGVEVQGRELRLNLA 290
MNG E+ GR + +N A
Sbjct: 66 EMNGKELDGRVITVNEA 82
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 41/74 (55%)
Query: 112 RLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRM 171
R +VG L ++ L F + G V+ +++ DR + RSRGF FVT ++AI
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 172 FDGSQVGGRIVRVN 185
+G ++ GR++ VN
Sbjct: 67 MNGKELDGRVITVN 80
>AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=169
Length = 169
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 52/77 (67%)
Query: 214 HKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALK 273
++ + G L W + +DL+ F++ ++ +K+I +R+SGRSRGFGFVTF+ + + A++
Sbjct: 6 YRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65
Query: 274 TMNGVEVQGRELRLNLA 290
MNG E+ GR + +N A
Sbjct: 66 EMNGKELDGRVITVNEA 82
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 41/74 (55%)
Query: 112 RLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRM 171
R +VG L ++ L F + G V+ +++ DR + RSRGF FVT ++AI
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 172 FDGSQVGGRIVRVN 185
+G ++ GR++ VN
Sbjct: 67 MNGKELDGRVITVN 80
>AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 |
chr1:26990777-26993489 REVERSE LENGTH=682
Length = 682
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 92/196 (46%), Gaps = 31/196 (15%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMF 172
+YV NLP +T +L + F + G + S VM D+ + SR F FV S + A A+
Sbjct: 241 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQ-SGNSRSFGFVNFVSPEAAAVAVEKM 299
Query: 173 DGSQVG------GRI---------VRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIY 217
+G +G GR +R F + ER+ K++ +N +Y
Sbjct: 300 NGISLGEDVLYVGRAQKKSDREEELRRKFEQ-----ERISRFEKLQGSN---------LY 345
Query: 218 AGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNG 277
NL V+ + LK++F+E + S KV+ G SRGFGFV + ++ A+K MNG
Sbjct: 346 LKNLDDSVNDEKLKEMFSEYGNVTSCKVMMN-SQGLSRGFGFVAYSNPEEALLAMKEMNG 404
Query: 278 VEVQGRELRLNLAAVK 293
+ + L + LA K
Sbjct: 405 KMIGRKPLYVALAQRK 420
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 87/176 (49%), Gaps = 23/176 (13%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMF 172
LYVG+L S+ S L ++F + V ++ V D +T RS G+A+V + +DA A+
Sbjct: 61 LYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRD-LTHRSLGYAYVNFANPEDASRAMESL 119
Query: 173 DGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRD---FVDSSHKIYAGNLGWRVSSQD 229
+ + + R +R+ +NRD + ++ NL + ++
Sbjct: 120 NYAPIRDRPIRIML------------------SNRDPSTRLSGKGNVFIKNLDASIDNKA 161
Query: 230 LKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQGREL 285
L + F+ ++S KV + GRS+G+GFV FE + +AA+ +NG+ + +++
Sbjct: 162 LYETFSSFGTILSCKVAMDV-VGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQV 216
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 82/173 (47%), Gaps = 21/173 (12%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMF 172
+++ NL S+ + L E F GT++S +V D V RS+G+ FV + A+ AI
Sbjct: 148 VFIKNLDASIDNKALYETFSSFGTILSCKVAMD-VVGRSKGYGFVQFEKEETAQAAIDKL 206
Query: 173 DGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNR-----DFVDSSHKIYAGNLGWRVSS 227
+G + + V V G +R +R V S +Y NL ++
Sbjct: 207 NGMLLNDKQVFV--------------GHFVRRQDRARSESGAVPSFTNVYVKNLPKEITD 252
Query: 228 QDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEV 280
+LK F + G +S+ V+ + SG SR FGFV F + + A++ MNG+ +
Sbjct: 253 DELKKTFGKY-GDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISL 304
>AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 |
chr1:26990777-26993489 REVERSE LENGTH=682
Length = 682
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 92/196 (46%), Gaps = 31/196 (15%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMF 172
+YV NLP +T +L + F + G + S VM D+ + SR F FV S + A A+
Sbjct: 241 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQ-SGNSRSFGFVNFVSPEAAAVAVEKM 299
Query: 173 DGSQVG------GRI---------VRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIY 217
+G +G GR +R F + ER+ K++ +N +Y
Sbjct: 300 NGISLGEDVLYVGRAQKKSDREEELRRKFEQ-----ERISRFEKLQGSN---------LY 345
Query: 218 AGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNG 277
NL V+ + LK++F+E + S KV+ G SRGFGFV + ++ A+K MNG
Sbjct: 346 LKNLDDSVNDEKLKEMFSEYGNVTSCKVMMN-SQGLSRGFGFVAYSNPEEALLAMKEMNG 404
Query: 278 VEVQGRELRLNLAAVK 293
+ + L + LA K
Sbjct: 405 KMIGRKPLYVALAQRK 420
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 87/176 (49%), Gaps = 23/176 (13%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMF 172
LYVG+L S+ S L ++F + V ++ V D +T RS G+A+V + +DA A+
Sbjct: 61 LYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRD-LTHRSLGYAYVNFANPEDASRAMESL 119
Query: 173 DGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRD---FVDSSHKIYAGNLGWRVSSQD 229
+ + + R +R+ +NRD + ++ NL + ++
Sbjct: 120 NYAPIRDRPIRIML------------------SNRDPSTRLSGKGNVFIKNLDASIDNKA 161
Query: 230 LKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQGREL 285
L + F+ ++S KV + GRS+G+GFV FE + +AA+ +NG+ + +++
Sbjct: 162 LYETFSSFGTILSCKVAMDV-VGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQV 216
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 82/173 (47%), Gaps = 21/173 (12%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMF 172
+++ NL S+ + L E F GT++S +V D V RS+G+ FV + A+ AI
Sbjct: 148 VFIKNLDASIDNKALYETFSSFGTILSCKVAMD-VVGRSKGYGFVQFEKEETAQAAIDKL 206
Query: 173 DGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNR-----DFVDSSHKIYAGNLGWRVSS 227
+G + + V V G +R +R V S +Y NL ++
Sbjct: 207 NGMLLNDKQVFV--------------GHFVRRQDRARSESGAVPSFTNVYVKNLPKEITD 252
Query: 228 QDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEV 280
+LK F + G +S+ V+ + SG SR FGFV F + + A++ MNG+ +
Sbjct: 253 DELKKTFGKY-GDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISL 304
>AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:6067394-6069098 REVERSE LENGTH=369
Length = 369
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 87/183 (47%), Gaps = 14/183 (7%)
Query: 112 RLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRM 171
+L+VG + + T+ F + G VV +M DR+T RGF FVT D+ A ++
Sbjct: 67 KLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFA---DSAVAEKV 123
Query: 172 FDGSQV-GGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSSQDL 230
+ V R V + +P+G ++ + V + KI+ G L + +L
Sbjct: 124 LEEDHVIDDRKVDLK-RTLPRGD---------KDTDIKAVSKTRKIFVGGLPPLLEEDEL 173
Query: 231 KDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQGRELRLNLA 290
K+ F ++ +++Y+ +GRSRGFGFVTF+T V+ E+ +++ + A
Sbjct: 174 KNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQVEIKRA 233
Query: 291 AVK 293
K
Sbjct: 234 EPK 236
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 38/68 (55%)
Query: 96 PQQEEEQKVSTSSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFA 155
P+ +++ + S R+++VG LP + +L F G ++ ++MYD T RSRGF
Sbjct: 142 PRGDKDTDIKAVSKTRKIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFG 201
Query: 156 FVTMGSVD 163
FVT + D
Sbjct: 202 FVTFQTED 209
>AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=92
Length = 92
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 53/86 (61%)
Query: 214 HKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALK 273
++ + G L W + +DL+ F++ ++ +K+I +R+SGRSRGFGFVTF+ + + A++
Sbjct: 6 YRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65
Query: 274 TMNGVEVQGRELRLNLAAVKAPSSPS 299
MNG E+ GR + +N A +
Sbjct: 66 EMNGKELDGRVITVNEAQSRGSGGGG 91
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 41/74 (55%)
Query: 112 RLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRM 171
R +VG L ++ L F + G V+ +++ DR + RSRGF FVT ++AI
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 172 FDGSQVGGRIVRVN 185
+G ++ GR++ VN
Sbjct: 67 MNGKELDGRVITVN 80
>AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 |
chr1:8055599-8058799 FORWARD LENGTH=660
Length = 660
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 84/168 (50%), Gaps = 11/168 (6%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMF 172
+++ NL S+ + L E F GT++S +V D VT RS+G+ FV + A+ AI
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQAAIDKL 196
Query: 173 DGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSSQDLKD 232
+G + + V V G + + R+ N ++ +Y NL + +L+
Sbjct: 197 NGMLMNDKQVFV--------GHFIRRQERARDENTPTPRFTN-VYVKNLPKEIGEDELRK 247
Query: 233 VFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEV 280
F + G++S+ V+ SG SR FGFV FE + +A++ MNG+ +
Sbjct: 248 TFGKF-GVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISL 294
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 85/184 (46%), Gaps = 7/184 (3%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMF 172
+YV NLP + +L + F + G + S VM D+ + SR F FV + A A+
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQ-SGNSRCFGFVNFECTEAAASAVEKM 289
Query: 173 DGSQVGGRIVRVNFPEVPKGGER---LVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSSQD 229
+G +G ++ V K ER L + NR +Y NL V +
Sbjct: 290 NGISLGDDVLYVG--RAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEK 347
Query: 230 LKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQGRELRLNL 289
LK++F+E + S+KV+ G SRGFGFV + ++ AL MNG + + L + L
Sbjct: 348 LKEMFSEYGNVTSSKVMLN-PQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIAL 406
Query: 290 AAVK 293
A K
Sbjct: 407 AQRK 410
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 86/176 (48%), Gaps = 23/176 (13%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMF 172
LY G+L +T + L ++F VVSV V D+ RS G+A++ + +DA A+
Sbjct: 51 LYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQ-NRRSLGYAYINFSNPNDAYRAMEAL 109
Query: 173 DGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRD---FVDSSHKIYAGNLGWRVSSQD 229
+ + + R +R+ +NRD + I+ NL + ++
Sbjct: 110 NYTPLFDRPIRIML------------------SNRDPSTRLSGKGNIFIKNLDASIDNKA 151
Query: 230 LKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQGREL 285
L + F+ ++S KV + +GRS+G+GFV FE + +AA+ +NG+ + +++
Sbjct: 152 LFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQV 206
>AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 |
chr1:12433356-12434735 REVERSE LENGTH=407
Length = 407
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 89/181 (49%), Gaps = 16/181 (8%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMF 172
++V NL S+ + QL ++F G V+S +V D + S+G+ FV S A
Sbjct: 33 VFVKNLDESIDNKQLCDMFSAFGKVLSCKVARD-ASGVSKGYGFVQFYSDLSVYTACNFH 91
Query: 173 DGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSSQDLKD 232
+G+ + + + V P V +G + +R F + +Y NL + DLK
Sbjct: 92 NGTLIRNQHIHV-CPFVSRGQW---------DKSRVFTN----VYVKNLVETATDADLKR 137
Query: 233 VFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQGRELRLNLAAV 292
+F E G +++ V+ + G+SR FGFV FE A+ A++ MNGV V +EL + A
Sbjct: 138 LFGEF-GEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQR 196
Query: 293 K 293
K
Sbjct: 197 K 197
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 86/191 (45%), Gaps = 20/191 (10%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMF 172
+YV NL + T + L +F E G + S VM D +SR F FV + A AI
Sbjct: 121 VYVKNLVETATDADLKRLFGEFGEITSAVVMKDG-EGKSRRFGFVNFEKAEAAVTAIEKM 179
Query: 173 DGS-------QVGGRIVRVNFPEVPKGG---ERLVMGPKIRNNNRDFVDSSHKIYAGNLG 222
+G VG + N E K E+++ K R +Y NL
Sbjct: 180 NGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTR--------KGMNLYVKNLD 231
Query: 223 WRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQG 282
V + L+++F+E + S KV+ + G S+G GFV F T+++ A+ MNG V
Sbjct: 232 DSVDNTKLEELFSEFGTITSCKVMVHSN-GISKGVGFVEFSTSEEASKAMLKMNGKMVGN 290
Query: 283 RELRLNLAAVK 293
+ + ++LA K
Sbjct: 291 KPIYVSLAQCK 301
>AT2G16940.2 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=610
Length = 610
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 89/204 (43%), Gaps = 19/204 (9%)
Query: 94 DKPQQEEEQKVSTSSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRG 153
DK + + E + D R ++ + T + E F AG V V ++ DR++ RSRG
Sbjct: 214 DKKEDKVEPEADPERDQRTVFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRG 273
Query: 154 FAFVTMGSVDDAKEAIRMFDGSQVGGRIVRVNFPEVPKG---------GERLVMGPKIRN 204
+V AI + G + G+ V V E K G ++GP
Sbjct: 274 IGYVEFYDTMSVPMAIAL-SGQPLLGQPVMVKPSEAEKNLVQSTTAAAGAGGMLGP---- 328
Query: 205 NNRDFVDSSHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFET 264
+ + ++Y GNL +S DL+ VF E G V + ++G +GFGFV F
Sbjct: 329 ----YSGGARRLYVGNLHINMSEDDLRKVF-ESFGSVELVQVPRDETGLCKGFGFVQFAR 383
Query: 265 AQDVEAALKTMNGVEVQGRELRLN 288
+D AL +E+ GR ++++
Sbjct: 384 LEDARNALNLNGQLEIAGRAIKVS 407
>AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 91/196 (46%), Gaps = 20/196 (10%)
Query: 108 SDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKE 167
SD +L++G + + +L + F G VV +M DR T R+RGF F+ D
Sbjct: 3 SDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVF--ADPCVS 60
Query: 168 AIRMFDGSQVGGRIVRVNFPEVPKGGERLV---------MGPKIRNNNRDFVDSSHKIYA 218
+ D + GR V VP+ ++++ M P R + KI+
Sbjct: 61 ERVIMDKHIIDGRTVEAK-KAVPRDDQQVLKRHASPIHLMSPVHGGGGR-----TKKIFV 114
Query: 219 GNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAAL-KTMNG 277
G L ++ ++ K+ F + + V+Y+ ++ R RGFGF+TF++ V+ L KT +
Sbjct: 115 GGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFH- 173
Query: 278 VEVQGRELRLNLAAVK 293
E+ G+ + + A K
Sbjct: 174 -ELNGKLVEVKRAVPK 188
>AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 91/196 (46%), Gaps = 20/196 (10%)
Query: 108 SDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKE 167
SD +L++G + + +L + F G VV +M DR T R+RGF F+ D
Sbjct: 3 SDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVF--ADPCVS 60
Query: 168 AIRMFDGSQVGGRIVRVNFPEVPKGGERLV---------MGPKIRNNNRDFVDSSHKIYA 218
+ D + GR V VP+ ++++ M P R + KI+
Sbjct: 61 ERVIMDKHIIDGRTVEAK-KAVPRDDQQVLKRHASPIHLMSPVHGGGGR-----TKKIFV 114
Query: 219 GNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAAL-KTMNG 277
G L ++ ++ K+ F + + V+Y+ ++ R RGFGF+TF++ V+ L KT +
Sbjct: 115 GGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFH- 173
Query: 278 VEVQGRELRLNLAAVK 293
E+ G+ + + A K
Sbjct: 174 -ELNGKLVEVKRAVPK 188
>AT2G21660.2 | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, and
rna binding 2 | chr2:9265477-9266316 REVERSE LENGTH=159
Length = 159
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 52/80 (65%)
Query: 211 DSSHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEA 270
D ++ + G L W + L+ FA+ ++ +K+I +R++GRSRGFGFVTF+ + ++
Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKD 64
Query: 271 ALKTMNGVEVQGRELRLNLA 290
A++ MNG ++ GR + +N A
Sbjct: 65 AIEGMNGQDLDGRSITVNEA 84
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 39/74 (52%)
Query: 112 RLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRM 171
R +VG L ++ L F + G V+ +++ DR T RSRGF FVT K+AI
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 172 FDGSQVGGRIVRVN 185
+G + GR + VN
Sbjct: 69 MNGQDLDGRSITVN 82
>AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold,
circadian rhythm, and rna binding 2 |
chr2:9265477-9266316 REVERSE LENGTH=176
Length = 176
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 52/80 (65%)
Query: 211 DSSHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEA 270
D ++ + G L W + L+ FA+ ++ +K+I +R++GRSRGFGFVTF+ + ++
Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKD 64
Query: 271 ALKTMNGVEVQGRELRLNLA 290
A++ MNG ++ GR + +N A
Sbjct: 65 AIEGMNGQDLDGRSITVNEA 84
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 39/74 (52%)
Query: 112 RLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRM 171
R +VG L ++ L F + G V+ +++ DR T RSRGF FVT K+AI
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 172 FDGSQVGGRIVRVN 185
+G + GR + VN
Sbjct: 69 MNGQDLDGRSITVN 82
>AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 91/196 (46%), Gaps = 20/196 (10%)
Query: 108 SDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKE 167
SD +L++G + + +L + F G VV +M DR T R+RGF F+ D
Sbjct: 3 SDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVF--ADPCVS 60
Query: 168 AIRMFDGSQVGGRIVRVNFPEVPKGGERLV---------MGPKIRNNNRDFVDSSHKIYA 218
+ D + GR V VP+ ++++ M P R + KI+
Sbjct: 61 ERVIMDKHIIDGRTVEAK-KAVPRDDQQVLKRHASPIHLMSPVHGGGGR-----TKKIFV 114
Query: 219 GNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAAL-KTMNG 277
G L ++ ++ K+ F + + V+Y+ ++ R RGFGF+TF++ V+ L KT +
Sbjct: 115 GGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFH- 173
Query: 278 VEVQGRELRLNLAAVK 293
E+ G+ + + A K
Sbjct: 174 -ELNGKLVEVKRAVPK 188
>AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 91/196 (46%), Gaps = 20/196 (10%)
Query: 108 SDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKE 167
SD +L++G + + +L + F G VV +M DR T R+RGF F+ D
Sbjct: 3 SDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVF--ADPCVS 60
Query: 168 AIRMFDGSQVGGRIVRVNFPEVPKGGERLV---------MGPKIRNNNRDFVDSSHKIYA 218
+ D + GR V VP+ ++++ M P R + KI+
Sbjct: 61 ERVIMDKHIIDGRTVEAK-KAVPRDDQQVLKRHASPIHLMSPVHGGGGR-----TKKIFV 114
Query: 219 GNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAAL-KTMNG 277
G L ++ ++ K+ F + + V+Y+ ++ R RGFGF+TF++ V+ L KT +
Sbjct: 115 GGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFH- 173
Query: 278 VEVQGRELRLNLAAVK 293
E+ G+ + + A K
Sbjct: 174 -ELNGKLVEVKRAVPK 188
>AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2555034-2555829 REVERSE LENGTH=143
Length = 143
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 47/87 (54%)
Query: 215 KIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKT 274
K++ G L W V Q LKD F+ + ++ Y++ SGRSRGFGFV F D +A
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDA 101
Query: 275 MNGVEVQGRELRLNLAAVKAPSSPSVT 301
M+G + GR LR++ A + P V
Sbjct: 102 MDGKGLLGRPLRISFALERVRGGPVVV 128
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 3/98 (3%)
Query: 112 RLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRM 171
+L++G L +S+ L + F G V V + YD+ + RSRGF FV DA A
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDA 101
Query: 172 FDGSQVGGRIVRVNFP-EVPKGGERLVMGPKIRNNNRD 208
DG + GR +R++F E +GG +V P++ + R+
Sbjct: 102 MDGKGLLGRPLRISFALERVRGGPVVV--PRLGKSKRE 137
>AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 88/183 (48%), Gaps = 6/183 (3%)
Query: 112 RLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRM 171
+L++G + + + +L + F G V+ +M DR T R+RGF FV + A+ + +
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL 66
Query: 172 FDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSSQDLK 231
+ G+IV VP+ + +S KI+ G L V+ + K
Sbjct: 67 --KHIIDGKIVEAK-KAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFK 123
Query: 232 DVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAAL-KTMNGVEVQGRELRLNLA 290
FA+ + V+Y+ + R RGFGF+++++ + V+ L KT + E+ G+ + + LA
Sbjct: 124 KYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFH--ELNGKMVEVKLA 181
Query: 291 AVK 293
K
Sbjct: 182 VPK 184
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 12/89 (13%)
Query: 108 SDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKE 167
S+ ++++VG L S+T ++ + F + G + V VMYD T R RGF F++ D++E
Sbjct: 103 SNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISY----DSEE 158
Query: 168 AI-----RMFDGSQVGGRIVRVNFPEVPK 191
A+ + F ++ G++V V VPK
Sbjct: 159 AVDKVLQKTFH--ELNGKMVEVKL-AVPK 184
>AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 88/183 (48%), Gaps = 6/183 (3%)
Query: 112 RLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRM 171
+L++G + + + +L + F G V+ +M DR T R+RGF FV + A+ + +
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL 66
Query: 172 FDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSSQDLK 231
+ G+IV VP+ + +S KI+ G L V+ + K
Sbjct: 67 --KHIIDGKIVEAK-KAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFK 123
Query: 232 DVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAAL-KTMNGVEVQGRELRLNLA 290
FA+ + V+Y+ + R RGFGF+++++ + V+ L KT + E+ G+ + + LA
Sbjct: 124 KYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFH--ELNGKMVEVKLA 181
Query: 291 AVK 293
K
Sbjct: 182 VPK 184
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 12/89 (13%)
Query: 108 SDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKE 167
S+ ++++VG L S+T ++ + F + G + V VMYD T R RGF F++ D++E
Sbjct: 103 SNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISY----DSEE 158
Query: 168 AI-----RMFDGSQVGGRIVRVNFPEVPK 191
A+ + F ++ G++V V VPK
Sbjct: 159 AVDKVLQKTFH--ELNGKMVEVKL-AVPK 184
>AT2G16940.1 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=561
Length = 561
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 83/189 (43%), Gaps = 19/189 (10%)
Query: 109 DDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEA 168
D R ++ + T + E F AG V V ++ DR++ RSRG +V A
Sbjct: 180 DQRTVFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEFYDTMSVPMA 239
Query: 169 IRMFDGSQVGGRIVRVNFPEVPKG---------GERLVMGPKIRNNNRDFVDSSHKIYAG 219
I + G + G+ V V E K G ++GP + + ++Y G
Sbjct: 240 IAL-SGQPLLGQPVMVKPSEAEKNLVQSTTAAAGAGGMLGP--------YSGGARRLYVG 290
Query: 220 NLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVE 279
NL +S DL+ VF E G V + ++G +GFGFV F +D AL +E
Sbjct: 291 NLHINMSEDDLRKVF-ESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNALNLNGQLE 349
Query: 280 VQGRELRLN 288
+ GR ++++
Sbjct: 350 IAGRAIKVS 358
>AT1G71800.1 | Symbols: CSTF64 | cleavage stimulating factor 64 |
chr1:26999606-27001850 FORWARD LENGTH=461
Length = 461
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 51/91 (56%)
Query: 105 STSSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDD 164
S+SS R ++VGN+PY T QL EI E G VVS ++ DR T + +G+ F +
Sbjct: 3 SSSSQRRCVFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEET 62
Query: 165 AKEAIRMFDGSQVGGRIVRVNFPEVPKGGER 195
A A R ++ GR +RV+F E KG ++
Sbjct: 63 ALSARRNLQSYEINGRQLRVDFAENDKGTDK 93
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 47/75 (62%)
Query: 216 IYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTM 275
++ GN+ + + + L+++ E +VS +++ +R++G+ +G+GF ++ + +A + +
Sbjct: 11 VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNL 70
Query: 276 NGVEVQGRELRLNLA 290
E+ GR+LR++ A
Sbjct: 71 QSYEINGRQLRVDFA 85
>AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protein 5
| chr1:27915346-27916857 FORWARD LENGTH=289
Length = 289
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 112 RLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRM 171
+++VG + YS L E F + G VV +++ DR T RSRGFAFVT S ++A A+++
Sbjct: 35 KIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQL 94
Query: 172 FDGSQVGGRIVRVNF 186
DG + GR +RVN+
Sbjct: 95 -DGQDLHGRRIRVNY 108
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 52/79 (65%), Gaps = 1/79 (1%)
Query: 212 SSHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAA 271
SS KI+ G + + L++ F++ +V AK+I +R++GRSRGF FVTF + ++ A
Sbjct: 32 SSSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNA 91
Query: 272 LKTMNGVEVQGRELRLNLA 290
++ ++G ++ GR +R+N A
Sbjct: 92 MQ-LDGQDLHGRRIRVNYA 109
>AT4G13860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:8022601-8023162 FORWARD LENGTH=87
Length = 87
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 43/75 (57%)
Query: 112 RLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRM 171
R+YVGNL + T L E F G VV VM DR TDRSRGF FVT S +A+ A+
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSG 63
Query: 172 FDGSQVGGRIVRVNF 186
DG ++ GR V V
Sbjct: 64 MDGKELNGRRVSVKL 78
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 47/78 (60%)
Query: 215 KIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKT 274
++Y GNL + L++ F+ +V A V+ +R + RSRGFGFVT+ + + EAA+
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSG 63
Query: 275 MNGVEVQGRELRLNLAAV 292
M+G E+ GR + + L +
Sbjct: 64 MDGKELNGRRVSVKLFGI 81
>AT3G04500.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:1212065-1213795 REVERSE LENGTH=245
Length = 245
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 53/86 (61%)
Query: 208 DFVDSSHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQD 267
++ ++ ++++ G+LG V+ L FA P AKVI ++ +G+++G+GFV+F D
Sbjct: 131 EWPENDYRLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPAD 190
Query: 268 VEAALKTMNGVEVQGRELRLNLAAVK 293
+ AALK MNG V R ++L ++ K
Sbjct: 191 LAAALKEMNGKYVGNRPIKLRKSSWK 216
>AT4G14300.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:8231179-8232785 FORWARD LENGTH=411
Length = 411
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 92/204 (45%), Gaps = 36/204 (17%)
Query: 108 SDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMG------- 160
SD +L+VG + + +L E F G V VM D++T R RGF FV
Sbjct: 3 SDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDR 62
Query: 161 ------SVD----DAKEAIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFV 210
S+D D K A+ + QV GR +N R++ D
Sbjct: 63 VLQEKHSIDTREVDVKRAMSREE-QQVSGRTGNLN---------------TSRSSGGDAY 106
Query: 211 DSSHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEA 270
+ + KI+ G L ++ ++ + F + ++Y++ + R RGFGFV+F++ V++
Sbjct: 107 NKTKKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDS 166
Query: 271 AL-KTMNGVEVQGRELRLNLAAVK 293
L KT + ++ G+++ + A K
Sbjct: 167 VLHKTFH--DLSGKQVEVKRALPK 188
>AT5G09880.1 | Symbols: | Splicing factor, CC1-like |
chr5:3081646-3085179 REVERSE LENGTH=527
Length = 527
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 91/202 (45%), Gaps = 27/202 (13%)
Query: 98 QEEEQKVSTSSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFV 157
+++E + D R ++ +P T + E F +AG V V ++ DR + RS+G ++
Sbjct: 155 KKDEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYI 214
Query: 158 TMGSVDDAKEAIRMFDGSQVGGRIVRVNFPEVPK----------GGERLVMGPKIRNNNR 207
V AI + G G+ V V E K GG GP R
Sbjct: 215 EFYDVMSVPMAIAL-SGQLFLGQPVMVKPSEAEKNLAQSNSTTVGG----TGPADR---- 265
Query: 208 DFVDSSHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQD 267
K+Y GNL + +S L+ +F + ++ + ++G+ +GFGF+ F +
Sbjct: 266 -------KLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEH 318
Query: 268 VEAALKTMNG-VEVQGRELRLN 288
+AA +NG +E+ GR ++++
Sbjct: 319 SKAAQIALNGKLEIAGRTIKVS 340
>AT2G16940.3 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=599
Length = 599
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 89/213 (41%), Gaps = 28/213 (13%)
Query: 94 DKPQQEEEQKVSTSSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVV---------SVEVMY 144
DK + + E + D R ++ + T + E F AG V V ++
Sbjct: 194 DKKEDKVEPEADPERDQRTVFAYQIALRATERDVYEFFSRAGKVCPFLCRFHVRDVRIIM 253
Query: 145 DRVTDRSRGFAFVTMGSVDDAKEAIRMFDGSQVGGRIVRVNFPEVPKG---------GER 195
DR++ RSRG +V AI + G + G+ V V E K G
Sbjct: 254 DRISRRSRGIGYVEFYDTMSVPMAIAL-SGQPLLGQPVMVKPSEAEKNLVQSTTAAAGAG 312
Query: 196 LVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSR 255
++GP + + ++Y GNL +S DL+ VF E G V + ++G +
Sbjct: 313 GMLGP--------YSGGARRLYVGNLHINMSEDDLRKVF-ESFGSVELVQVPRDETGLCK 363
Query: 256 GFGFVTFETAQDVEAALKTMNGVEVQGRELRLN 288
GFGFV F +D AL +E+ GR ++++
Sbjct: 364 GFGFVQFARLEDARNALNLNGQLEIAGRAIKVS 396
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 5/88 (5%)
Query: 111 RRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIR 170
RRLYVGNL +M+ L ++F G+V V+V D T +GF FV ++DA+ A+
Sbjct: 323 RRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDE-TGLCKGFGFVQFARLEDARNALN 381
Query: 171 MFDGSQVGGRIVRVNF----PEVPKGGE 194
+ ++ GR ++V+ EVP+ G+
Sbjct: 382 LNGQLEIAGRAIKVSAVTDQTEVPEAGQ 409
>AT5G19960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6744029-6746133 FORWARD LENGTH=337
Length = 337
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 53/95 (55%), Gaps = 3/95 (3%)
Query: 106 TSSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDA 165
T D +YVG LPY +T + +F G+V++V+++ DR R + + FVT + A
Sbjct: 2 TMDDGNSVYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSV-RGKCYGFVTFSNRRSA 60
Query: 166 KEAIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGP 200
+AI DG +GGR VRVN +V G R+ GP
Sbjct: 61 DDAIEDMDGKSIGGRAVRVN--DVTTRGGRMNPGP 93
>AT5G47620.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=453
Length = 453
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 96/202 (47%), Gaps = 22/202 (10%)
Query: 112 RLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAI-- 169
+L++G + + + +L + F G V+ +M DR T R+RGF FV + A+ +
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL 66
Query: 170 -RMFDG-----SQVGGRIVR----VNFPEVPKGGERLVMGPKIRNN--NRDFVDS----- 212
+ DG S V ++ R ++ EV + + + + N N S
Sbjct: 67 KHIIDGKILVDSIVYNQLCRSDKCISLSEVVEAKKAVPRDDHVVFNKSNSSLQGSPGPSN 126
Query: 213 SHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAAL 272
S KI+ G L V+ + K FA+ + V+Y+ + R RGFGF+++++ + V+ L
Sbjct: 127 SKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVL 186
Query: 273 -KTMNGVEVQGRELRLNLAAVK 293
KT + E+ G+ + + LA K
Sbjct: 187 QKTFH--ELNGKMVEVKLAVPK 206
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 12/89 (13%)
Query: 108 SDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKE 167
S+ ++++VG L S+T ++ + F + G + V VMYD T R RGF F++ D++E
Sbjct: 125 SNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISY----DSEE 180
Query: 168 AI-----RMFDGSQVGGRIVRVNFPEVPK 191
A+ + F ++ G++V V VPK
Sbjct: 181 AVDKVLQKTFH--ELNGKMVEVKL-AVPK 206
>AT2G46780.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:19229516-19231043 FORWARD LENGTH=336
Length = 336
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 6/89 (6%)
Query: 215 KIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKT 274
KI+ G L W ++ F + +V A VI ++++GRS+G+GFVTF+ A+ A +
Sbjct: 23 KIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQN 82
Query: 275 MNGVEVQGRELRLNLAAVKA-----PSSP 298
MN V + GR NLA + A P+SP
Sbjct: 83 MNPV-IDGRRANCNLACLGAQKPRPPTSP 110
>AT2G21440.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:9173712-9179065 REVERSE LENGTH=1003
Length = 1003
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 43/72 (59%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMF 172
+ V LPYS+T++QL E F E G V ++ ++ +D RGFAFV +D AI +
Sbjct: 22 VCVSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVKFALQEDVNRAIELK 81
Query: 173 DGSQVGGRIVRV 184
+GS VGGR + V
Sbjct: 82 NGSTVGGRRITV 93
>AT4G36960.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:17427349-17429589 FORWARD LENGTH=379
Length = 379
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 73/161 (45%), Gaps = 17/161 (10%)
Query: 110 DRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAI 169
+R+L V +P+ + S L + + G + VM DR T RSRGF +VT S +DAK A+
Sbjct: 2 ERKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNAL 61
Query: 170 RMFDGSQ-VGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSSQ 228
+ G +G RI+ V V PK R +I+ + VS
Sbjct: 62 K---GEHFLGNRILEVK-----------VATPK--EEMRQPAKKVTRIFVARIPSSVSES 105
Query: 229 DLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVE 269
D + F + + + +S + RG GF+TF +A VE
Sbjct: 106 DFRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVE 146
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 36/59 (61%)
Query: 215 KIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALK 273
K+ + W + S LKD ++ L V+ +R +GRSRGFG+VTF +A+D + ALK
Sbjct: 4 KLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALK 62
>AT4G36960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:17427349-17429589 FORWARD LENGTH=379
Length = 379
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 73/161 (45%), Gaps = 17/161 (10%)
Query: 110 DRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAI 169
+R+L V +P+ + S L + + G + VM DR T RSRGF +VT S +DAK A+
Sbjct: 2 ERKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNAL 61
Query: 170 RMFDGSQ-VGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSSQ 228
+ G +G RI+ V V PK R +I+ + VS
Sbjct: 62 K---GEHFLGNRILEVK-----------VATPK--EEMRQPAKKVTRIFVARIPSSVSES 105
Query: 229 DLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVE 269
D + F + + + +S + RG GF+TF +A VE
Sbjct: 106 DFRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVE 146
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 36/59 (61%)
Query: 215 KIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALK 273
K+ + W + S LKD ++ L V+ +R +GRSRGFG+VTF +A+D + ALK
Sbjct: 4 KLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALK 62
>AT4G16280.4 | Symbols: | RNA binding;abscisic acid binding |
chr4:9207164-9214187 REVERSE LENGTH=672
Length = 672
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 89/179 (49%), Gaps = 21/179 (11%)
Query: 104 VSTSSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVD 163
VS S +L+VG++P + T ++ F + G V+ V ++ D+ T + +G FV +
Sbjct: 38 VSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSK 97
Query: 164 DAKEAIRMFDGSQV----GGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAG 219
DA AIR +Q+ G V+V + + GER +G +F K++ G
Sbjct: 98 DADRAIRALH-NQITLPGGTGPVQVRYAD----GERERIG------TLEF-----KLFVG 141
Query: 220 NLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGV 278
+L + + ++++++F Q G V + + +SRG GFV + + + AA+ +NG
Sbjct: 142 SLNKQATEKEVEEIFL-QFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNGT 199
>AT1G03457.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:861109-864019 REVERSE LENGTH=429
Length = 429
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 77/169 (45%), Gaps = 16/169 (9%)
Query: 112 RLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRM 171
+L+VG +P MT QL +F E V V ++ ++ T RG F+T + +DA + I
Sbjct: 13 KLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKVINS 72
Query: 172 FDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSSQDLK 231
F + +P L +++ + + HK++ G L VS +++
Sbjct: 73 FHNKKT-----------LPGASSPL----QVKYADGELERLEHKLFVGMLPKNVSETEVQ 117
Query: 232 DVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEV 280
+F+E G + I S+G F+ +E+ + AA++ +NG +
Sbjct: 118 SLFSEY-GTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEALNGRHI 165
>AT3G15010.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:5052844-5054058 FORWARD LENGTH=404
Length = 404
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 89/202 (44%), Gaps = 24/202 (11%)
Query: 96 PQQEEEQKVSTSSD--DRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRG 153
P E +++ SD R+L++ L T+ L +F G + V+ D+VT +S+G
Sbjct: 58 PDVLESVRLTADSDISQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKG 117
Query: 154 FAFVTMGSVDDA----KEAIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDF 209
+ FVT VD A KE + DG RV ++ G +
Sbjct: 118 YGFVTFMHVDGALLALKEPSKKIDG--------RVTVTQLAASGN--------QGTGSQI 161
Query: 210 VD-SSHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDV 268
D S KIY N+ + + + L + F + + +++ +G+SRGF ++TA+
Sbjct: 162 ADISMRKIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGA 221
Query: 269 EAALKTMNGVEVQGRELRLNLA 290
+AAL V + G+ L LA
Sbjct: 222 QAALADPVKV-IDGKHLNCKLA 242
>AT3G15010.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:5052844-5054058 FORWARD LENGTH=404
Length = 404
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 89/202 (44%), Gaps = 24/202 (11%)
Query: 96 PQQEEEQKVSTSSD--DRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRG 153
P E +++ SD R+L++ L T+ L +F G + V+ D+VT +S+G
Sbjct: 58 PDVLESVRLTADSDISQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKG 117
Query: 154 FAFVTMGSVDDA----KEAIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDF 209
+ FVT VD A KE + DG RV ++ G +
Sbjct: 118 YGFVTFMHVDGALLALKEPSKKIDG--------RVTVTQLAASGN--------QGTGSQI 161
Query: 210 VD-SSHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDV 268
D S KIY N+ + + + L + F + + +++ +G+SRGF ++TA+
Sbjct: 162 ADISMRKIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGA 221
Query: 269 EAALKTMNGVEVQGRELRLNLA 290
+AAL V + G+ L LA
Sbjct: 222 QAALADPVKV-IDGKHLNCKLA 242
>AT2G37510.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:15743112-15744504 REVERSE LENGTH=142
Length = 142
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 44/71 (61%)
Query: 212 SSHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAA 271
+S +++ L +++ L+D FA LV A+VI +RDSGRS+GFGFVT+ T +D E A
Sbjct: 32 TSPRLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKA 91
Query: 272 LKTMNGVEVQG 282
MN + G
Sbjct: 92 KAEMNAKFLDG 102
>AT1G60650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr1:22340089-22342148 FORWARD LENGTH=292
Length = 292
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 44/83 (53%)
Query: 112 RLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRM 171
R++VG L + +T QL F G + ++M R T R RGF F+T A +AI+
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKH 72
Query: 172 FDGSQVGGRIVRVNFPEVPKGGE 194
G ++G +++ VN E GGE
Sbjct: 73 MHGRELGNKVISVNKAEPKVGGE 95
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 45/79 (56%)
Query: 215 KIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKT 274
+I+ G L W V+ + L+ F + +++ RD+GR RGFGF+TF + + A+K
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKH 72
Query: 275 MNGVEVQGRELRLNLAAVK 293
M+G E+ + + +N A K
Sbjct: 73 MHGRELGNKVISVNKAEPK 91
>AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr1:22340089-22342148 FORWARD LENGTH=292
Length = 292
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 44/83 (53%)
Query: 112 RLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRM 171
R++VG L + +T QL F G + ++M R T R RGF F+T A +AI+
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKH 72
Query: 172 FDGSQVGGRIVRVNFPEVPKGGE 194
G ++G +++ VN E GGE
Sbjct: 73 MHGRELGNKVISVNKAEPKVGGE 95
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 45/79 (56%)
Query: 215 KIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKT 274
+I+ G L W V+ + L+ F + +++ RD+GR RGFGF+TF + + A+K
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKH 72
Query: 275 MNGVEVQGRELRLNLAAVK 293
M+G E+ + + +N A K
Sbjct: 73 MHGRELGNKVISVNKAEPK 91
>AT4G39260.4 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=105
Length = 105
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 43/63 (68%)
Query: 214 HKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALK 273
++ + G L W + +DL+ F++ ++ +K+I +R+SGRSRGFGFVTF+ + + A++
Sbjct: 6 YRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65
Query: 274 TMN 276
MN
Sbjct: 66 EMN 68
>AT4G16280.3 | Symbols: FCA | RNA binding;abscisic acid binding |
chr4:9208564-9214412 REVERSE LENGTH=533
Length = 533
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 89/179 (49%), Gaps = 21/179 (11%)
Query: 104 VSTSSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVD 163
VS S +L+VG++P + T ++ F + G V+ V ++ D+ T + +G FV +
Sbjct: 113 VSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSK 172
Query: 164 DAKEAIRMFDGSQV----GGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAG 219
DA AIR +Q+ G V+V + + GER +G +F K++ G
Sbjct: 173 DADRAIRALH-NQITLPGGTGPVQVRYAD----GERERIG------TLEF-----KLFVG 216
Query: 220 NLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGV 278
+L + + ++++++F Q G V + + +SRG GFV + + + AA+ +NG
Sbjct: 217 SLNKQATEKEVEEIFL-QFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNGT 274
>AT3G06970.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2199653-2201150 REVERSE LENGTH=317
Length = 317
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 215 KIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKT 274
KI+ GNL WR ++ DL+ F + +V A V+ E GRS+G+GF+TF AL+
Sbjct: 13 KIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVRALQN 72
Query: 275 MNGVEVQGRELRLNLAAVKA 294
+ + GR NLA+ A
Sbjct: 73 SKPI-IDGRTTNCNLASAGA 91
>AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |
chr4:9207164-9214412 REVERSE LENGTH=747
Length = 747
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 89/179 (49%), Gaps = 21/179 (11%)
Query: 104 VSTSSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVD 163
VS S +L+VG++P + T ++ F + G V+ V ++ D+ T + +G FV +
Sbjct: 113 VSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSK 172
Query: 164 DAKEAIRMFDGSQV----GGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAG 219
DA AIR +Q+ G V+V + + GER +G +F K++ G
Sbjct: 173 DADRAIRALH-NQITLPGGTGPVQVRYAD----GERERIG------TLEF-----KLFVG 216
Query: 220 NLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGV 278
+L + + ++++++F Q G V + + +SRG GFV + + + AA+ +NG
Sbjct: 217 SLNKQATEKEVEEIFL-QFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNGT 274
>AT1G03457.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:861109-864019 REVERSE LENGTH=438
Length = 438
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 79/174 (45%), Gaps = 17/174 (9%)
Query: 112 RLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRM 171
+L+VG +P MT QL +F E V V ++ ++ T RG F+T + +DA + I
Sbjct: 13 KLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKVINS 72
Query: 172 FDGSQ-VGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSS----HKIYAGNLGWRVS 226
F + + G + ERL D +D S HK++ G L VS
Sbjct: 73 FHNKKTLPGASSPLQVKYADGELERL-----------DVLDCSCNPEHKLFVGMLPKNVS 121
Query: 227 SQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEV 280
+++ +F+E G + I S+G F+ +E+ + AA++ +NG +
Sbjct: 122 ETEVQSLFSEY-GTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEALNGRHI 174
>AT5G47320.1 | Symbols: RPS19 | ribosomal protein S19 |
chr5:19203801-19204951 FORWARD LENGTH=212
Length = 212
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 213 SHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAAL 272
S K+Y G L LKD F+ G+ A+V+ + +GRSRG+GFV F + +A+
Sbjct: 30 STKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAI 89
Query: 273 KTMNGVEVQGRELRLNLAAVKAPSSPSVTEE 303
MNG E+ G + +N+A PS P +E
Sbjct: 90 SAMNGQELNGFNISVNVAK-DWPSLPLSLDE 119
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 112 RLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRM 171
+LY+G L L + F V VM ++VT RSRG+ FV S D A AI
Sbjct: 32 KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISA 91
Query: 172 FDGSQVGGRIVRVN----FPEVP 190
+G ++ G + VN +P +P
Sbjct: 92 MNGQELNGFNISVNVAKDWPSLP 114
>AT4G03110.2 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding
protein-defense related 1 | chr4:1376710-1379275 REVERSE
LENGTH=439
Length = 439
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 78/166 (46%), Gaps = 16/166 (9%)
Query: 112 RLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRM 171
+L+VG +P M+ SQL +F E V V ++ D++T SRG F+ S ++A + +
Sbjct: 19 KLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLVNA 78
Query: 172 FDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSSQDLK 231
+ +P L +++ + + HK++ G L VS +++
Sbjct: 79 CHNKKT-----------LPGANSLL----QVKYADGELERLEHKLFVGMLPKNVSEAEVQ 123
Query: 232 DVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNG 277
+F++ G + I S+G F+ +ET + +A++++NG
Sbjct: 124 SLFSKY-GTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESING 168
>AT1G13690.1 | Symbols: ATE1 | ATPase E1 | chr1:4693380-4694179
FORWARD LENGTH=177
Length = 177
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMF 172
LYVG L + S L F+ G + V+ D+ + R F FVT +DA A+
Sbjct: 15 LYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAMDNM 74
Query: 173 DGSQVGGRIVRVNF--PEVPKGGER 195
DG+++ GR++ VN+ PE KGGE+
Sbjct: 75 DGAELYGRVLTVNYALPEKIKGGEQ 99
>AT4G03110.1 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding
protein-defense related 1 | chr4:1376612-1379275 REVERSE
LENGTH=441
Length = 441
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 78/166 (46%), Gaps = 16/166 (9%)
Query: 112 RLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRM 171
+L+VG +P M+ SQL +F E V V ++ D++T SRG F+ S ++A + +
Sbjct: 19 KLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLVNA 78
Query: 172 FDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSSQDLK 231
+ +P L +++ + + HK++ G L VS +++
Sbjct: 79 CHNKKT-----------LPGANSLL----QVKYADGELERLEHKLFVGMLPKNVSEAEVQ 123
Query: 232 DVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNG 277
+F++ G + I S+G F+ +ET + +A++++NG
Sbjct: 124 SLFSKY-GTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESING 168
>AT1G07350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:2258816-2259586 REVERSE LENGTH=129
Length = 129
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 40/72 (55%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMF 172
LYV L + +T L + F + G V V ++ D T SRGF F++M SV DA IR
Sbjct: 47 LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSL 106
Query: 173 DGSQVGGRIVRV 184
D S + GR++ V
Sbjct: 107 DHSVLQGRVITV 118
>AT5G64200.2 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human
splicing factor SC35 | chr5:25681849-25683553 REVERSE
LENGTH=303
Length = 303
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 47/92 (51%)
Query: 108 SDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKE 167
SD L V N+ + T+ L +F + G VV V + DR T SRGFAFV D+A +
Sbjct: 13 SDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHK 72
Query: 168 AIRMFDGSQVGGRIVRVNFPEVPKGGERLVMG 199
A+ DG V GR + V F + E++ G
Sbjct: 73 AVERLDGRVVDGREITVQFAKYGPNAEKISKG 104
>AT5G64200.1 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human
splicing factor SC35 | chr5:25681849-25683553 REVERSE
LENGTH=303
Length = 303
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 47/92 (51%)
Query: 108 SDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKE 167
SD L V N+ + T+ L +F + G VV V + DR T SRGFAFV D+A +
Sbjct: 13 SDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHK 72
Query: 168 AIRMFDGSQVGGRIVRVNFPEVPKGGERLVMG 199
A+ DG V GR + V F + E++ G
Sbjct: 73 AVERLDGRVVDGREITVQFAKYGPNAEKISKG 104
>AT1G07350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:2257732-2260101 REVERSE LENGTH=382
Length = 382
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 40/72 (55%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMF 172
LYV L + +T L + F + G V V ++ D T SRGF F++M SV DA IR
Sbjct: 77 LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSL 136
Query: 173 DGSQVGGRIVRV 184
D S + GR++ V
Sbjct: 137 DHSVLQGRVITV 148
>AT3G10400.1 | Symbols: | RNA recognition motif and CCHC-type zinc
finger domains containing protein | chr3:3232636-3233421
FORWARD LENGTH=261
Length = 261
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 43/74 (58%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMF 172
LYV NL +S+T+S + +F G V V V+ DR T +SRG AFV S +DA +A R
Sbjct: 59 LYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARSM 118
Query: 173 DGSQVGGRIVRVNF 186
D + GR + V+
Sbjct: 119 DAKILNGRKLTVSI 132
>AT5G11412.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:3640349-3640876 REVERSE LENGTH=175
Length = 175
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 210 VDSSH-KIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDV 268
VD+ + KIY G L W ++ L+ F + ++ ++ +R++GRS G+GFVTF A+
Sbjct: 47 VDTRYTKIYVGGLPWETRNEGLRSYFEQFGDIIHVNMVCDRETGRSEGYGFVTFRDAESA 106
Query: 269 EAALKTMNGVEVQGRELRLNLAAV 292
A + V + GRE + NLA +
Sbjct: 107 TRACQNPKPV-IDGREAKCNLAYI 129
>AT5G41690.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:16670126-16674189 REVERSE LENGTH=567
Length = 567
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 93/205 (45%), Gaps = 20/205 (9%)
Query: 110 DRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAI 169
++ L+V NLPY + + F + G VV V+++ + + + G FV SV++A+EA+
Sbjct: 67 EKTLFVANLPYETKIPNIIDFFKKVGEVVRVQLIVN-LKGKLVGCGFVEFASVNEAEEAL 125
Query: 170 R-----MFDGSQVGGRIVRVNFPEVP-----------KGGERLVMGPKIRNNNRDFVDSS 213
+ D +++ + +P K RL P I + R
Sbjct: 126 QKKNGECLDNNKIFLDVANKKATYLPPKYCIDHKVWDKDYRRLESHP-IEEDERPPNSVE 184
Query: 214 HKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALK 273
++ NL + D+ D F +VS +++ + G+ G+GFV F +A + + AL+
Sbjct: 185 EVLFVANLSPQTKISDIFDFFNCVGEVVSIRLMVNHE-GKHVGYGFVEFASADETKKALE 243
Query: 274 TMNGVEVQGRELRLNLAAVKAPSSP 298
NG + ++ +++A AP P
Sbjct: 244 NKNGEYLHDHKIFIDVAKT-APYPP 267
>AT2G33410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:14156085-14157435 FORWARD LENGTH=404
Length = 404
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 92/195 (47%), Gaps = 18/195 (9%)
Query: 108 SDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKE 167
SD +L++G + + + L E F G V+ V VM ++ T R RGF FV D A
Sbjct: 3 SDQGKLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAF--SDPAVI 60
Query: 168 AIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIR----NNNRDFVDSSH----KIYAG 219
+ D + R V +V + R P R N +R+F ++ KI+ G
Sbjct: 61 DRVLQDKHHIDNRDV-----DVKRAMSREEQSPAGRSGTFNASRNFDSGANVRTKKIFVG 115
Query: 220 NLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAAL-KTMNGV 278
L ++S + + F + A ++ ++ + R RGFGFV+F++ V+ L KT +
Sbjct: 116 GLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTFH-- 173
Query: 279 EVQGRELRLNLAAVK 293
++ G+++ + A K
Sbjct: 174 DLNGKQVEVKRALPK 188
>AT1G76460.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:28686932-28688506 REVERSE LENGTH=285
Length = 285
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 53/96 (55%), Gaps = 6/96 (6%)
Query: 206 NRDFVDSSH-KIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFET 264
N F D++ K++ G L W S+ L+ F + ++ A VI ++++GRS+G+GFVTF
Sbjct: 15 NSPFGDTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTF-- 72
Query: 265 AQDVEAALKTMNGVE--VQGRELRLNLAAVKAPSSP 298
+D EAA + + GR NLA++ P P
Sbjct: 73 -RDPEAARRACADPTPIIDGRRANCNLASLGRPRPP 107
>AT1G48920.1 | Symbols: ATNUC-L1, PARL1, NUC-L1 | nucleolin like 1 |
chr1:18098186-18101422 FORWARD LENGTH=557
Length = 557
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 85/179 (47%), Gaps = 12/179 (6%)
Query: 111 RRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIR 170
+ L+ NL +++ + + F EAG VV V +R RGF V S ++A++A+
Sbjct: 297 KTLFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEEAQKALE 356
Query: 171 MFDGSQVGGRIVRVNFP-EVPKGGERLVMGPKIRNNNRDFVDSS--HKIYAGNLGWRVSS 227
F G + GR +R++ E + GER P+ N R D KI+ +S
Sbjct: 357 -FHGRPLLGREIRLDIAQERGERGERPAFTPQ-SGNFRSGGDGGDEKKIFVKGFDASLSE 414
Query: 228 QDLKDVFAEQ----PGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQG 282
D+K+ E + + V +RD+G S+G ++ F + E AL+ +NG ++ G
Sbjct: 415 DDIKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEFSEGK--EKALE-LNGSDMGG 470
>AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr5:1192461-1195413 FORWARD LENGTH=310
Length = 310
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 49/79 (62%)
Query: 215 KIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKT 274
+I+ G L V+ +DL+ F+ ++ +++ ERD+GRSRGFGF+TF + ++ +++
Sbjct: 8 RIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIRE 67
Query: 275 MNGVEVQGRELRLNLAAVK 293
M+G + R + +N A K
Sbjct: 68 MHGRDFGDRVISVNRAEPK 86
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 112 RLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRM 171
R++VG L +T L F G ++ ++M +R T RSRGF F+T E+IR
Sbjct: 8 RIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIRE 67
Query: 172 FDGSQVGGRIVRVNFPEVPK 191
G G R++ VN E PK
Sbjct: 68 MHGRDFGDRVISVNRAE-PK 86
>AT4G19610.1 | Symbols: | nucleotide binding;nucleic acid
binding;RNA binding | chr4:10677482-10681623 FORWARD
LENGTH=816
Length = 816
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 47/96 (48%)
Query: 89 ETETSDKPQQEEEQKVSTSSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVT 148
E E K QE + D RL+V NLPY+ T +L E F G + V ++ D+ T
Sbjct: 272 EVEGDGKVAQESKAVSDDVLDTGRLFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKET 331
Query: 149 DRSRGFAFVTMGSVDDAKEAIRMFDGSQVGGRIVRV 184
RSRG A++ + A A+ D S GR++ +
Sbjct: 332 KRSRGIAYILYLIPECAARAMEELDNSSFQGRLLHI 367
>AT1G33470.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:12144632-12146040 FORWARD LENGTH=244
Length = 244
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 46/90 (51%), Gaps = 9/90 (10%)
Query: 215 KIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKT 274
K++ G L W L++ F + +V A VI ++ SGRS+G+GFVTF D EAA K
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTF---CDPEAAQKA 64
Query: 275 M--NGVEVQGRELRLNLAAVKA----PSSP 298
+ GR NLAA PSSP
Sbjct: 65 CVDPAPVIDGRRANCNLAAFGVQRSKPSSP 94
>AT1G33470.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:12144632-12146040 FORWARD LENGTH=245
Length = 245
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 46/90 (51%), Gaps = 9/90 (10%)
Query: 215 KIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKT 274
K++ G L W L++ F + +V A VI ++ SGRS+G+GFVTF D EAA K
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTF---CDPEAAQKA 64
Query: 275 M--NGVEVQGRELRLNLAAVKA----PSSP 298
+ GR NLAA PSSP
Sbjct: 65 CVDPAPVIDGRRANCNLAAFGVQRSKPSSP 94
>AT3G46020.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:16912511-16913250 REVERSE LENGTH=102
Length = 102
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 112 RLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRM 171
+L+V L T L ++F G + ++ D T R +GF F+T S DDA++A++
Sbjct: 8 QLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKS 67
Query: 172 FDGSQVGGRIVRVNFPEVPKGGERLVMG 199
DG V GR++ F EV K E + G
Sbjct: 68 LDGKIVDGRLI---FVEVAKNAEEVRAG 92
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 46/78 (58%)
Query: 213 SHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAAL 272
S +++ L + Q L+ +F+ + A++I + ++ R +GFGF+TF++ D AL
Sbjct: 6 SAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKAL 65
Query: 273 KTMNGVEVQGRELRLNLA 290
K+++G V GR + + +A
Sbjct: 66 KSLDGKIVDGRLIFVEVA 83
>AT5G53680.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:21798382-21799109 FORWARD LENGTH=169
Length = 169
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Query: 204 NNNRDFVDSSHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFE 263
+++++F + KIY G L W + L + F ++ V+ +R++ RS+G+GFVTF+
Sbjct: 3 HHHQNFDTTFTKIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFK 62
Query: 264 TAQDVEAALKTMNGVEVQGRELRLNLAAVKAPSSPSVTE 302
A+ A K N ++GR LA V A P+ ++
Sbjct: 63 DAESATRACKDPNPT-IEGRITNCKLAFVGAKVKPNQSQ 100
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%)
Query: 112 RLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIR 170
++YVG LP++ L F G ++ V V+ DR TDRS+G+ FVT + A A +
Sbjct: 14 KIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACK 72
>AT1G22910.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:8105808-8107618 FORWARD LENGTH=242
Length = 242
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 2/104 (1%)
Query: 215 KIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKT 274
K++ G L W + +K F + ++ A VI ++ SGRS+G+GFVTF A+ +A
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 275 MNGVEVQGRELRLNLAAVKAP-SSPSVTEENEGSSVDTSELVSS 317
V + GR NLA++ S PS G ++ ++ S
Sbjct: 74 ATPV-IDGRRANCNLASLGLQRSKPSTPNHGGGGRINNMRVMMS 116
>AT1G60900.1 | Symbols: | U2 snRNP auxilliary factor, large
subunit, splicing factor | chr1:22424008-22427806
FORWARD LENGTH=589
Length = 589
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/198 (21%), Positives = 86/198 (43%), Gaps = 19/198 (9%)
Query: 111 RRLYVGNLPYSMTSSQLTEIF------VEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDD 164
RR+YVG LP + ++ F + T + + + + + FAFV M SV++
Sbjct: 255 RRVYVGGLPPTANEQSVSTFFSQVMSAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEE 314
Query: 165 AKEAIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDF------------VDS 212
A A+ + DG + G V+V P +GP N N + ++
Sbjct: 315 ASNAMAL-DGIILEGVPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLSSGSTGGLEG 373
Query: 213 SHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAAL 272
+I+ G L + + ++++ L ++ +R++G S+G+ F ++ + A
Sbjct: 374 PDRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIAC 433
Query: 273 KTMNGVEVQGRELRLNLA 290
+NG+++ + L + A
Sbjct: 434 AALNGIKMGDKTLTVRRA 451
>AT1G22330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7886693-7889241 FORWARD LENGTH=291
Length = 291
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 209 FVDSSH-KIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQD 267
F D++H K++ G L W + +++ F + ++ A +I ++ +G+S+G+GFVTF +
Sbjct: 11 FGDTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDS 70
Query: 268 VEAALKTMNGVEVQGRELRLNLAAVKAP 295
A+ N V + GR+ N+A+ P
Sbjct: 71 ATRAVADPNPV-IDGRKANCNIASFGRP 97
>AT1G22910.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:8105808-8107659 FORWARD LENGTH=249
Length = 249
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 2/104 (1%)
Query: 215 KIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKT 274
K++ G L W + +K F + ++ A VI ++ SGRS+G+GFVTF A+ +A
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 275 MNGVEVQGRELRLNLAAVKAP-SSPSVTEENEGSSVDTSELVSS 317
V + GR NLA++ S PS G ++ ++ S
Sbjct: 74 ATPV-IDGRRANCNLASLGLQRSKPSTPNHGGGGRINNMRVMMS 116
>AT1G09140.1 | Symbols: ATSRP30, SR30, At-SR30 | SERINE-ARGININE
PROTEIN 30 | chr1:2942887-2945818 REVERSE LENGTH=268
Length = 268
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 83/179 (46%), Gaps = 19/179 (10%)
Query: 110 DRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAI 169
+R +YVGNLP + ++ ++F + G +V +++ ++ R G+AFV DA +AI
Sbjct: 6 NRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDL---KIPPRPPGYAFVEFEDPRDADDAI 62
Query: 170 RMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVD-------SSHKIYAGNLG 222
DG G +RV E+ GG R P + + + S +++ L
Sbjct: 63 YGRDGYDFDGCRLRV---EIAHGGRRF--SPSVDRYSSSYSASRAPSRRSDYRVLVTGLP 117
Query: 223 WRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQ 281
S QDLKD + + ++V +R G S G V + D++ A++ ++ E +
Sbjct: 118 PSASWQDLKDHMRKAGDVCFSEVFPDR-KGMS---GVVDYSNYDDMKYAIRKLDATEFR 172
>AT5G02530.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:564332-565776 REVERSE LENGTH=290
Length = 290
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 54/91 (59%), Gaps = 3/91 (3%)
Query: 210 VDSSHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVE 269
+++ K+Y NL + VS++D+K++F+E L + Y+R SGRS+G V F D
Sbjct: 104 IETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYGIHYDR-SGRSKGTAEVVFSRRGDAL 162
Query: 270 AALKTMNGVEVQGRELRLNLAA--VKAPSSP 298
AA+K N V++ G+ +++ + + AP+ P
Sbjct: 163 AAVKRYNNVQLDGKLMKIEIVGTNLSAPALP 193
>AT5G02530.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:564332-565776 REVERSE LENGTH=292
Length = 292
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 54/91 (59%), Gaps = 3/91 (3%)
Query: 210 VDSSHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVE 269
+++ K+Y NL + VS++D+K++F+E L + Y+R SGRS+G V F D
Sbjct: 104 IETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYGIHYDR-SGRSKGTAEVVFSRRGDAL 162
Query: 270 AALKTMNGVEVQGRELRLNLAA--VKAPSSP 298
AA+K N V++ G+ +++ + + AP+ P
Sbjct: 163 AAVKRYNNVQLDGKLMKIEIVGTNLSAPALP 193
>AT1G22910.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:8105808-8107949 FORWARD LENGTH=347
Length = 347
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 2/104 (1%)
Query: 215 KIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKT 274
K++ G L W + +K F + ++ A VI ++ SGRS+G+GFVTF A+ +A
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 275 MNGVEVQGRELRLNLAAVKAP-SSPSVTEENEGSSVDTSELVSS 317
V + GR NLA++ S PS G ++ ++ S
Sbjct: 74 ATPV-IDGRRANCNLASLGLQRSKPSTPNHGGGGRINNMRVMMS 116
>AT2G27330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:11695350-11696563 REVERSE LENGTH=116
Length = 116
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 46/73 (63%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMF 172
L+V + +S T LT+ F + G V+ V+V+ D++ R +GFA+VT S ++A++A+
Sbjct: 23 LFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLEL 82
Query: 173 DGSQVGGRIVRVN 185
+ V GR+V ++
Sbjct: 83 NAQLVDGRVVILD 95
>AT1G09140.2 | Symbols: ATSRP30, SR30, At-SR30 | SERINE-ARGININE
PROTEIN 30 | chr1:2943528-2945818 REVERSE LENGTH=256
Length = 256
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 85/183 (46%), Gaps = 19/183 (10%)
Query: 106 TSSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDA 165
+S +R +YVGNLP + ++ ++F + G +V +++ ++ R G+AFV DA
Sbjct: 2 SSRWNRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDL---KIPPRPPGYAFVEFEDPRDA 58
Query: 166 KEAIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVD-------SSHKIYA 218
+AI DG G +RV E+ GG R P + + + S +++
Sbjct: 59 DDAIYGRDGYDFDGCRLRV---EIAHGGRRF--SPSVDRYSSSYSASRAPSRRSDYRVLV 113
Query: 219 GNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGV 278
L S QDLKD + + ++V +R G S G V + D++ A++ ++
Sbjct: 114 TGLPPSASWQDLKDHMRKAGDVCFSEVFPDR-KGMS---GVVDYSNYDDMKYAIRKLDAT 169
Query: 279 EVQ 281
E +
Sbjct: 170 EFR 172
>AT1G16610.3 | Symbols: SR45 | arginine/serine-rich 45 |
chr1:5675925-5678686 REVERSE LENGTH=425
Length = 425
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMF 172
L+V +L ++ + L EIF G V+ VE+ DR + RG +V + DA++A
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159
Query: 173 DGSQVGGRIVRVNF 186
DG+Q+ G++V+ F
Sbjct: 160 DGAQIDGKVVKATF 173
>AT1G16610.2 | Symbols: SR45, RNPS1 | arginine/serine-rich 45 |
chr1:5675925-5678686 REVERSE LENGTH=407
Length = 407
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMF 172
L+V +L ++ + L EIF G V+ VE+ DR + RG +V + DA++A
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159
Query: 173 DGSQVGGRIVRVNF 186
DG+Q+ G++V+ F
Sbjct: 160 DGAQIDGKVVKATF 173
>AT1G16610.1 | Symbols: SR45, RNPS1 | arginine/serine-rich 45 |
chr1:5675925-5678686 REVERSE LENGTH=414
Length = 414
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMF 172
L+V +L ++ + L EIF G V+ VE+ DR + RG +V + DA++A
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159
Query: 173 DGSQVGGRIVRVNF 186
DG+Q+ G++V+ F
Sbjct: 160 DGAQIDGKVVKATF 173
>AT4G00830.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/178 (20%), Positives = 81/178 (45%), Gaps = 25/178 (14%)
Query: 87 EPETETSDKPQQEEEQKVSTSSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDR 146
+P + D+ +++ +S +++G LP + L ++ E G + V +M DR
Sbjct: 92 KPPSPIDDEDREKYSHLLSLPPHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDR 151
Query: 147 VTDRSRGFAFVTMGSVDDAKEAIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNN 206
+ S+G+AFV + D A++AI + G+ +R + E
Sbjct: 152 DSGDSKGYAFVAFKTKDVAQKAIEELHSKEFKGKTIRCSLSE------------------ 193
Query: 207 RDFVDSSHKIYAGNLGWRVSSQDLKDVFAE-QPGLVSAKVIYE-RDSGRSRGFGFVTF 262
+ ++++ GN+ + + + V + PG+ + ++I + ++ R+RGF FV +
Sbjct: 194 -----TKNRLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLY 246
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 90/198 (45%), Gaps = 21/198 (10%)
Query: 103 KVSTSSDDRRLYVGNLPYSMTSSQLTEIFVEAGT-VVSVEVMYDRV-TDRSRGFAFVTM- 159
+ S S RL++GN+P + T + ++ + G V ++E++ D T R+RGFAFV
Sbjct: 188 RCSLSETKNRLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYY 247
Query: 160 --GSVDDAKEAIRMFDGS-QVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKI 216
D +++ +M D + ++ G V + + E +++ +
Sbjct: 248 NNACADYSRQ--KMIDSNFKLEGNAPTVTWADPKSSPEHSAAAAQVK-----------AL 294
Query: 217 YAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMN 276
Y N+ S++ LK++F G V+ K++ G R FGFV + A+K
Sbjct: 295 YVKNIPENTSTEQLKELFQRH-GEVT-KIVTPPGKGGKRDFGFVHYAERSSALKAVKDTE 352
Query: 277 GVEVQGRELRLNLAAVKA 294
EV G+ L + LA +A
Sbjct: 353 RYEVNGQPLEVVLAKPQA 370
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 47/79 (59%)
Query: 215 KIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKT 274
+++ G L V +DL+D+ E + +++ +RDSG S+G+ FV F+T + A++
Sbjct: 117 EVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEE 176
Query: 275 MNGVEVQGRELRLNLAAVK 293
++ E +G+ +R +L+ K
Sbjct: 177 LHSKEFKGKTIRCSLSETK 195
>AT4G00830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/178 (20%), Positives = 81/178 (45%), Gaps = 25/178 (14%)
Query: 87 EPETETSDKPQQEEEQKVSTSSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDR 146
+P + D+ +++ +S +++G LP + L ++ E G + V +M DR
Sbjct: 92 KPPSPIDDEDREKYSHLLSLPPHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDR 151
Query: 147 VTDRSRGFAFVTMGSVDDAKEAIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNN 206
+ S+G+AFV + D A++AI + G+ +R + E
Sbjct: 152 DSGDSKGYAFVAFKTKDVAQKAIEELHSKEFKGKTIRCSLSE------------------ 193
Query: 207 RDFVDSSHKIYAGNLGWRVSSQDLKDVFAE-QPGLVSAKVIYE-RDSGRSRGFGFVTF 262
+ ++++ GN+ + + + V + PG+ + ++I + ++ R+RGF FV +
Sbjct: 194 -----TKNRLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLY 246
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 90/198 (45%), Gaps = 21/198 (10%)
Query: 103 KVSTSSDDRRLYVGNLPYSMTSSQLTEIFVEAGT-VVSVEVMYDRV-TDRSRGFAFVTM- 159
+ S S RL++GN+P + T + ++ + G V ++E++ D T R+RGFAFV
Sbjct: 188 RCSLSETKNRLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYY 247
Query: 160 --GSVDDAKEAIRMFDGS-QVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKI 216
D +++ +M D + ++ G V + + E +++ +
Sbjct: 248 NNACADYSRQ--KMIDSNFKLEGNAPTVTWADPKSSPEHSAAAAQVK-----------AL 294
Query: 217 YAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMN 276
Y N+ S++ LK++F G V+ K++ G R FGFV + A+K
Sbjct: 295 YVKNIPENTSTEQLKELFQRH-GEVT-KIVTPPGKGGKRDFGFVHYAERSSALKAVKDTE 352
Query: 277 GVEVQGRELRLNLAAVKA 294
EV G+ L + LA +A
Sbjct: 353 RYEVNGQPLEVVLAKPQA 370
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 47/79 (59%)
Query: 215 KIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKT 274
+++ G L V +DL+D+ E + +++ +RDSG S+G+ FV F+T + A++
Sbjct: 117 EVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEE 176
Query: 275 MNGVEVQGRELRLNLAAVK 293
++ E +G+ +R +L+ K
Sbjct: 177 LHSKEFKGKTIRCSLSETK 195
>AT2G43410.1 | Symbols: FPA | RNA binding | chr2:18026397-18030989
REVERSE LENGTH=858
Length = 858
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 80/184 (43%), Gaps = 35/184 (19%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVT-DRSRGFAFVTMGSVDDAKEAIRM 171
L+VG+L T S LTE+F G + DR+T SRGFAF+ V++A A
Sbjct: 20 LWVGSLTPETTESDLTELFGRYGDI-------DRITVYSSRGFAFIYYRHVEEAVAAKEA 72
Query: 172 FDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSSQDLK 231
G+ + G +++ + K + L + G +G VS DL+
Sbjct: 73 LQGANLNGSQIKIEYARPAKPCKSL--------------------WVGGIGPNVSKDDLE 112
Query: 232 DVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQGRELRLNLAA 291
+ F++ + + + ER + F+ + D A K+MNG + G LR++
Sbjct: 113 EEFSKFGKIEDFRFLRERKT------AFIDYYEMDDALQA-KSMNGKPMGGSFLRVDFLR 165
Query: 292 VKAP 295
+AP
Sbjct: 166 SQAP 169
>AT2G43410.4 | Symbols: FPA | RNA binding | chr2:18026397-18030989
REVERSE LENGTH=901
Length = 901
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 80/184 (43%), Gaps = 35/184 (19%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVT-DRSRGFAFVTMGSVDDAKEAIRM 171
L+VG+L T S LTE+F G + DR+T SRGFAF+ V++A A
Sbjct: 20 LWVGSLTPETTESDLTELFGRYGDI-------DRITVYSSRGFAFIYYRHVEEAVAAKEA 72
Query: 172 FDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSSQDLK 231
G+ + G +++ + K + L + G +G VS DL+
Sbjct: 73 LQGANLNGSQIKIEYARPAKPCKSL--------------------WVGGIGPNVSKDDLE 112
Query: 232 DVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQGRELRLNLAA 291
+ F++ + + + ER + F+ + D A K+MNG + G LR++
Sbjct: 113 EEFSKFGKIEDFRFLRERKT------AFIDYYEMDDALQA-KSMNGKPMGGSFLRVDFLR 165
Query: 292 VKAP 295
+AP
Sbjct: 166 SQAP 169
>AT2G43410.3 | Symbols: FPA | RNA binding | chr2:18026397-18030989
REVERSE LENGTH=901
Length = 901
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 80/184 (43%), Gaps = 35/184 (19%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVT-DRSRGFAFVTMGSVDDAKEAIRM 171
L+VG+L T S LTE+F G + DR+T SRGFAF+ V++A A
Sbjct: 20 LWVGSLTPETTESDLTELFGRYGDI-------DRITVYSSRGFAFIYYRHVEEAVAAKEA 72
Query: 172 FDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSSQDLK 231
G+ + G +++ + K + L + G +G VS DL+
Sbjct: 73 LQGANLNGSQIKIEYARPAKPCKSL--------------------WVGGIGPNVSKDDLE 112
Query: 232 DVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQGRELRLNLAA 291
+ F++ + + + ER + F+ + D A K+MNG + G LR++
Sbjct: 113 EEFSKFGKIEDFRFLRERKT------AFIDYYEMDDALQA-KSMNGKPMGGSFLRVDFLR 165
Query: 292 VKAP 295
+AP
Sbjct: 166 SQAP 169
>AT2G43410.2 | Symbols: FPA | RNA binding | chr2:18026397-18030989
REVERSE LENGTH=901
Length = 901
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 80/184 (43%), Gaps = 35/184 (19%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVT-DRSRGFAFVTMGSVDDAKEAIRM 171
L+VG+L T S LTE+F G + DR+T SRGFAF+ V++A A
Sbjct: 20 LWVGSLTPETTESDLTELFGRYGDI-------DRITVYSSRGFAFIYYRHVEEAVAAKEA 72
Query: 172 FDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSSQDLK 231
G+ + G +++ + K + L + G +G VS DL+
Sbjct: 73 LQGANLNGSQIKIEYARPAKPCKSL--------------------WVGGIGPNVSKDDLE 112
Query: 232 DVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQGRELRLNLAA 291
+ F++ + + + ER + F+ + D A K+MNG + G LR++
Sbjct: 113 EEFSKFGKIEDFRFLRERKT------AFIDYYEMDDALQA-KSMNGKPMGGSFLRVDFLR 165
Query: 292 VKAP 295
+AP
Sbjct: 166 SQAP 169
>AT2G22100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:9392397-9393545 REVERSE LENGTH=382
Length = 382
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 211 DSSHK-IYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVE 269
DSS + I+ LGW + ++LK F + V+ ++D+GR++GFGFV F+T +
Sbjct: 159 DSSQRNIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGAR 218
Query: 270 AALK 273
AALK
Sbjct: 219 AALK 222
>AT2G21690.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:9270114-9270597 REVERSE LENGTH=117
Length = 117
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 39/63 (61%)
Query: 214 HKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALK 273
+ + L +DL D+F++ ++ +K+IY+RD+G+SR FGFVTFE + + A+
Sbjct: 7 YTCFVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDAIM 66
Query: 274 TMN 276
M+
Sbjct: 67 IMD 69
>AT5G51300.3 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%)
Query: 109 DDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEA 168
D+ LY+G LP + L +F G +V +V+ DRVT S+G+ FV V A A
Sbjct: 478 DETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTA 537
Query: 169 IRMFDGSQVGGRIVRV 184
++ +G + GR + V
Sbjct: 538 VQAMNGYRFEGRTLAV 553
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%)
Query: 216 IYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTM 275
+Y G L + L ++F+ +V AKVI +R +G S+G+GFV + Q A++ M
Sbjct: 482 LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAM 541
Query: 276 NGVEVQGRELRLNLAA 291
NG +GR L + +A
Sbjct: 542 NGYRFEGRTLAVRIAG 557
>AT5G51300.2 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%)
Query: 109 DDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEA 168
D+ LY+G LP + L +F G +V +V+ DRVT S+G+ FV V A A
Sbjct: 478 DETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTA 537
Query: 169 IRMFDGSQVGGRIVRV 184
++ +G + GR + V
Sbjct: 538 VQAMNGYRFEGRTLAV 553
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%)
Query: 216 IYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTM 275
+Y G L + L ++F+ +V AKVI +R +G S+G+GFV + Q A++ M
Sbjct: 482 LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAM 541
Query: 276 NGVEVQGRELRLNLAA 291
NG +GR L + +A
Sbjct: 542 NGYRFEGRTLAVRIAG 557
>AT5G51300.1 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%)
Query: 109 DDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEA 168
D+ LY+G LP + L +F G +V +V+ DRVT S+G+ FV V A A
Sbjct: 478 DETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTA 537
Query: 169 IRMFDGSQVGGRIVRV 184
++ +G + GR + V
Sbjct: 538 VQAMNGYRFEGRTLAV 553
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%)
Query: 216 IYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTM 275
+Y G L + L ++F+ +V AKVI +R +G S+G+GFV + Q A++ M
Sbjct: 482 LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAM 541
Query: 276 NGVEVQGRELRLNLAA 291
NG +GR L + +A
Sbjct: 542 NGYRFEGRTLAVRIAG 557
>AT1G58470.1 | Symbols: ATRBP1, RBP1 | RNA-binding protein 1 |
chr1:21727374-21728539 FORWARD LENGTH=360
Length = 360
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 81/179 (45%), Gaps = 15/179 (8%)
Query: 109 DDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEA 168
D +L+VG + + L + F G V+ V ++VT + RGF FV + D +A
Sbjct: 4 DRYKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKA 63
Query: 169 IRMFDGSQVGGRIVRV----------NFPEVPKGGERLV--MGPKIRNNNRDFVDS-SHK 215
+R D + G+ V V P + ER V M +R + + V S + K
Sbjct: 64 LR--DTHFILGKPVDVRKAIRKHELYQQPFSMQFLERKVQQMNGGLREMSSNGVTSRTKK 121
Query: 216 IYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKT 274
I+ G L + ++ K F V+++ + R RGFGFVT+++ VE +++
Sbjct: 122 IFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQS 180
>AT1G20880.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7262879-7264834 REVERSE LENGTH=274
Length = 274
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 59/118 (50%), Gaps = 9/118 (7%)
Query: 206 NRDFVDSSH-KIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFET 264
N F D++ K++ G L W S+ L+ F + ++ A VI ++++GRS+G+GFVTF
Sbjct: 15 NSPFGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTF-- 72
Query: 265 AQDVEAALKTM--NGVEVQGRELRLNLAAV---KAPSSPSVTEENEGSSVDTSELVSS 317
+D EAA + + GR NLA++ + P +V G S V S
Sbjct: 73 -RDPEAARRACVDPTPIIDGRRANCNLASLGRSRPPMQYAVIPHAPGRVRPPSPYVGS 129
>AT1G20880.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7262879-7264834 REVERSE LENGTH=274
Length = 274
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 59/118 (50%), Gaps = 9/118 (7%)
Query: 206 NRDFVDSSH-KIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFET 264
N F D++ K++ G L W S+ L+ F + ++ A VI ++++GRS+G+GFVTF
Sbjct: 15 NSPFGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTF-- 72
Query: 265 AQDVEAALKTM--NGVEVQGRELRLNLAAV---KAPSSPSVTEENEGSSVDTSELVSS 317
+D EAA + + GR NLA++ + P +V G S V S
Sbjct: 73 -RDPEAARRACVDPTPIIDGRRANCNLASLGRSRPPMQYAVIPHAPGRVRPPSPYVGS 129
>AT1G78260.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:29447317-29450181 FORWARD LENGTH=287
Length = 287
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 209 FVDSSH-KIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQD 267
F D+++ K++ G L W + +++ F + ++ A +I ++++G+S+G+GFVTF +
Sbjct: 11 FGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDS 70
Query: 268 VEAALKTMNGVEVQGRELRLNLAA 291
A+ N V + GR+ N+A+
Sbjct: 71 ATRAVADPNPV-IDGRKANCNIAS 93
>AT4G20030.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:10846362-10847246 FORWARD LENGTH=152
Length = 152
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 112 RLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRM 171
++ V NLP+S + L F G + V+++ D RS+G+AF+ S DDA AI
Sbjct: 41 KIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIET 100
Query: 172 FDGSQVGGRIVRVNFPEVPKGGERLVMG 199
D GR++ ++ + K G+R G
Sbjct: 101 MDRRMYNGRMIYID---IAKPGKRDFQG 125
>AT1G02840.3 | Symbols: SR1, ATSRP34, SRP34, SR34, At-SR34 |
RNA-binding (RRM/RBD/RNP motifs) family protein |
chr1:626918-629583 FORWARD LENGTH=303
Length = 303
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 6/90 (6%)
Query: 106 TSSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDA 165
+S R +YVGNLP + ++ ++F + G VV +++ +V R G+AFV DA
Sbjct: 2 SSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDDARDA 58
Query: 166 KEAIRMFDGSQVGGRIVRVNFPEVPKGGER 195
++AI DG G +RV E+ GG R
Sbjct: 59 EDAIHGRDGYDFDGHRLRV---ELAHGGRR 85
>AT1G02840.1 | Symbols: SR1, ATSRP34, SRP34, SR34, At-SR34 |
RNA-binding (RRM/RBD/RNP motifs) family protein |
chr1:626918-629583 FORWARD LENGTH=303
Length = 303
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 6/90 (6%)
Query: 106 TSSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDA 165
+S R +YVGNLP + ++ ++F + G VV +++ +V R G+AFV DA
Sbjct: 2 SSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDDARDA 58
Query: 166 KEAIRMFDGSQVGGRIVRVNFPEVPKGGER 195
++AI DG G +RV E+ GG R
Sbjct: 59 EDAIHGRDGYDFDGHRLRV---ELAHGGRR 85
>AT1G02840.2 | Symbols: SR1, ATSRP34, SRP34, SR34, At-SR34 |
RNA-binding (RRM/RBD/RNP motifs) family protein |
chr1:626918-628995 FORWARD LENGTH=285
Length = 285
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 80/194 (41%), Gaps = 41/194 (21%)
Query: 111 RRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIR 170
R +YVGNLP + ++ ++F + G VV +++ +V R G+AFV DA++AI
Sbjct: 7 RTVYVGNLPGDIREREVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDDARDAEDAIH 63
Query: 171 MFDGSQVGGRIVRVNFPEVPKGGER-----------------------LVMGPKIRNNNR 207
DG G +RV E+ GG R GP R
Sbjct: 64 GRDGYDFDGHRLRV---ELAHGGRRSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRR---- 116
Query: 208 DFVDSSHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQD 267
S ++ L S QDLKD + G V +Y G + G V + +D
Sbjct: 117 ----SEFRVLVTGLPSSASWQDLKD-HMRKGGDVCFSQVYRDARGTT---GVVDYTCYED 168
Query: 268 VEAALKTMNGVEVQ 281
++ ALK ++ E +
Sbjct: 169 MKYALKKLDDTEFR 182
>AT1G18630.1 | Symbols: GR-RBP6 | glycine-rich RNA-binding protein 6
| chr1:6415226-6416283 FORWARD LENGTH=155
Length = 155
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 40/69 (57%)
Query: 215 KIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKT 274
KI+ G L + LK+ F +V A V+ +R+SG SRGFGFVT+++ + A++
Sbjct: 37 KIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQA 96
Query: 275 MNGVEVQGR 283
M E+ GR
Sbjct: 97 MQNKELDGR 105
>AT5G59950.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:24140629-24141504 FORWARD LENGTH=178
Length = 178
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 6/92 (6%)
Query: 210 VDSSHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVE 269
+++ K+Y NL + V ++D+K++FAE L V ++R SGRS+G V + D
Sbjct: 18 IETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDR-SGRSKGTAEVVYSRRGDAL 76
Query: 270 AALKTMNGVEVQGRELRL-----NLAAVKAPS 296
AA+K N V++ G+ +++ NL APS
Sbjct: 77 AAVKKYNDVQLDGKPMKIEIVGTNLQTAAAPS 108
>AT4G35785.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:16953708-16955127 REVERSE LENGTH=207
Length = 207
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 39/72 (54%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMF 172
LYV L +T L F + G V S ++ + T SRGFAFVTM S+ DA+ I+
Sbjct: 74 LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYL 133
Query: 173 DGSQVGGRIVRV 184
+ S + GR + V
Sbjct: 134 NQSVLEGRYITV 145
>AT4G00830.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 87/189 (46%), Gaps = 21/189 (11%)
Query: 112 RLYVGNLPYSMTSSQLTEIFVEAGT-VVSVEVMYDRV-TDRSRGFAFVTM---GSVDDAK 166
RL++GN+P + T + ++ + G V ++E++ D T R+RGFAFV D ++
Sbjct: 197 RLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYYNNACADYSR 256
Query: 167 EAIRMFDGS-QVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRV 225
+ +M D + ++ G V + + E +++ +Y N+
Sbjct: 257 Q--KMIDSNFKLEGNAPTVTWADPKSSPEHSAAAAQVK-----------ALYVKNIPENT 303
Query: 226 SSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQGREL 285
S++ LK++F G V+ K++ G R FGFV + A+K EV G+ L
Sbjct: 304 STEQLKELFQRH-GEVT-KIVTPPGKGGKRDFGFVHYAERSSALKAVKDTERYEVNGQPL 361
Query: 286 RLNLAAVKA 294
+ LA +A
Sbjct: 362 EVVLAKPQA 370
>AT5G59950.5 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:24140235-24141504 FORWARD LENGTH=245
Length = 245
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 6/92 (6%)
Query: 210 VDSSHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVE 269
+++ K+Y NL + V ++D+K++FAE L V ++R SGRS+G V + D
Sbjct: 84 IETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDR-SGRSKGTAEVVYSRRGDAL 142
Query: 270 AALKTMNGVEVQGRELRL-----NLAAVKAPS 296
AA+K N V++ G+ +++ NL APS
Sbjct: 143 AAVKKYNDVQLDGKPMKIEIVGTNLQTAAAPS 174
>AT5G59950.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:24140235-24141504 FORWARD LENGTH=242
Length = 242
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 6/92 (6%)
Query: 210 VDSSHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVE 269
+++ K+Y NL + V ++D+K++FAE L V ++R SGRS+G V + D
Sbjct: 82 IETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDR-SGRSKGTAEVVYSRRGDAL 140
Query: 270 AALKTMNGVEVQGRELRL-----NLAAVKAPS 296
AA+K N V++ G+ +++ NL APS
Sbjct: 141 AAVKKYNDVQLDGKPMKIEIVGTNLQTAAAPS 172
>AT3G18610.1 | Symbols: PARLL1, ATNUC-L2, NUC-L2 | nucleolin like 2
| chr3:6404270-6407822 REVERSE LENGTH=636
Length = 636
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 90/184 (48%), Gaps = 21/184 (11%)
Query: 106 TSSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEV-MYDRVTDRS-RGFAFVTMGSVD 163
T + L+ GNL Y + S + F EAG VV V + +D D S +G+ + S +
Sbjct: 379 TQGGSKTLFAGNLSYQIARSDIENFFKEAGEVVDVRLSSFD---DGSFKGYGHIEFASPE 435
Query: 164 DAKEAIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDS-SHKIY----A 218
+A++A+ M +G + GR VR++ ER P+ N R S S IY +
Sbjct: 436 EAQKALEM-NGKLLLGRDVRLDL-----ANERGT--PRNSNPGRKGEGSQSRTIYVRGFS 487
Query: 219 GNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGV 278
+LG ++L+ F++ + V +R++G SRGF ++ + D AL+ ++G
Sbjct: 488 SSLGEDEIKKELRSHFSKCGEVTRVHVPTDRETGASRGFAYIDLTSGFD--EALQ-LSGS 544
Query: 279 EVQG 282
E+ G
Sbjct: 545 EIGG 548
>AT4G00830.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352842-354965 FORWARD LENGTH=467
Length = 467
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 47/79 (59%)
Query: 215 KIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKT 274
+++ G L V +DL+D+ E + +++ +RDSG S+G+ FV F+T + A++
Sbjct: 97 EVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEE 156
Query: 275 MNGVEVQGRELRLNLAAVK 293
++ E +G+ +R +L+ K
Sbjct: 157 LHSKEFKGKTIRCSLSETK 175
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/177 (20%), Positives = 76/177 (42%), Gaps = 31/177 (17%)
Query: 87 EPETETSDKPQQEEEQKVSTSSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDR 146
+P + D+ +++ +S +++G LP + L ++ E G + V +M DR
Sbjct: 72 KPPSPIDDEDREKYSHLLSLPPHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDR 131
Query: 147 VTDRSRGFAFVTMGSVDDAKEAIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNN 206
+ S+G+AFV + D A++AI + G+ +R + E
Sbjct: 132 DSGDSKGYAFVAFKTKDVAQKAIEELHSKEFKGKTIRCSLSE------------------ 173
Query: 207 RDFVDSSHKIYAGNLGWRVSSQDLKDVFAE-QPGLVSAKVIYERDSGRSRGFGFVTF 262
+ ++++ GN+ + + + V + PG + ++ R+RGF FV +
Sbjct: 174 -----TKNRLFIGNIPKNWTEDEFRKVIEDVGPGDPT-------NTTRNRGFAFVLY 218
>AT5G08695.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:2829341-2834189 FORWARD LENGTH=690
Length = 690
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 51/122 (41%), Gaps = 12/122 (9%)
Query: 71 EVAQDSTDSRQDNPEPEPETETSDKPQQEEEQKVSTSSDDRRLYVGNLPYSMTSSQLTEI 130
EV D D D E E + SD D RL+V LPYS T +L E
Sbjct: 198 EVKADRVDKDDDGHAMEVEADGSD-----------DVLDAGRLFVHGLPYSTTEEELMEH 246
Query: 131 FVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMFDGSQVGGRIVRVNFPEVP 190
F + G + V ++ D+ T RG AFV + AK A+ D GR + + P P
Sbjct: 247 FSKFGDISEVHLVLDKDTRSCRGMAFVLYLIPESAKMAMDKLDKLPFQGRTLHI-LPAKP 305
Query: 191 KG 192
+
Sbjct: 306 RA 307
>AT5G59950.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:24140235-24141504 FORWARD LENGTH=244
Length = 244
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 6/92 (6%)
Query: 210 VDSSHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVE 269
+++ K+Y NL + V ++D+K++FAE L V ++R SGRS+G V + D
Sbjct: 84 IETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDR-SGRSKGTAEVVYSRRGDAL 142
Query: 270 AALKTMNGVEVQGRELRL-----NLAAVKAPS 296
AA+K N V++ G+ +++ NL APS
Sbjct: 143 AAVKKYNDVQLDGKPMKIEIVGTNLQTAAAPS 174
>AT4G35785.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:16953211-16955127 REVERSE LENGTH=238
Length = 238
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%)
Query: 216 IYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTM 275
+Y L RV+ +DL+ FA++ + S ++ E + SRGF FVT + +D E +K +
Sbjct: 73 LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYL 132
Query: 276 NGVEVQGRELRLNLAAVKAPSSPS 299
N ++GR + + + K P +P+
Sbjct: 133 NQSVLEGRYITVERSRRKRPRTPT 156
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMF 172
LYV L +T L F + G V S ++ + T SRGFAFVTM S+ DA+ I+
Sbjct: 73 LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYL 132
Query: 173 DGSQVGGRIV-----RVNFPEVPKGGERLVM 198
+ S + GR + R P P G L +
Sbjct: 133 NQSVLEGRYITVERSRRKRPRTPTPGHYLGL 163
>AT4G35785.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:16953211-16955127 REVERSE LENGTH=239
Length = 239
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%)
Query: 216 IYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTM 275
+Y L RV+ +DL+ FA++ + S ++ E + SRGF FVT + +D E +K +
Sbjct: 74 LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYL 133
Query: 276 NGVEVQGRELRLNLAAVKAPSSPS 299
N ++GR + + + K P +P+
Sbjct: 134 NQSVLEGRYITVERSRRKRPRTPT 157
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMF 172
LYV L +T L F + G V S ++ + T SRGFAFVTM S+ DA+ I+
Sbjct: 74 LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYL 133
Query: 173 DGSQVGGRIV-----RVNFPEVPKGGERLVM 198
+ S + GR + R P P G L +
Sbjct: 134 NQSVLEGRYITVERSRRKRPRTPTPGHYLGL 164
>AT5G59950.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:24140235-24141410 FORWARD LENGTH=211
Length = 211
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 6/92 (6%)
Query: 210 VDSSHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVE 269
+++ K+Y NL + V ++D+K++FAE L V ++R SGRS+G V + D
Sbjct: 84 IETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDR-SGRSKGTAEVVYSRRGDAL 142
Query: 270 AALKTMNGVEVQGRELRL-----NLAAVKAPS 296
AA+K N V++ G+ +++ NL APS
Sbjct: 143 AAVKKYNDVQLDGKPMKIEIVGTNLQTAAAPS 174
>AT2G47310.1 | Symbols: | flowering time control protein-related /
FCA gamma-related | chr2:19423791-19426846 FORWARD
LENGTH=512
Length = 512
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 75/173 (43%), Gaps = 19/173 (10%)
Query: 112 RLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIR- 170
+LYV + + T + ++F + G V + + D++T + F+ V++ AI
Sbjct: 111 KLYVAPISKTATEYDIRQVFEKYGNVTEIILPKDKMTGERAAYCFIKYKKVEEGNAAIAA 170
Query: 171 -----MFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRV 225
F G + V+V F E + ER+ P +N K+Y L +
Sbjct: 171 LTEQFTFPGEMLP---VKVRFAEAER--ERIGFAPVQLPDNP-------KLYVRCLNKQT 218
Query: 226 SSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGV 278
+ ++ +VF+ G++ + D RG+ FV F + AA+K +NG+
Sbjct: 219 TKMEVNEVFSRY-GIIEDIYMALDDMKICRGYAFVQFSCKEMALAAIKALNGL 270
>AT1G78260.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:29447317-29449246 FORWARD LENGTH=271
Length = 271
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 50/85 (58%), Gaps = 2/85 (2%)
Query: 209 FVDSSH-KIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQD 267
F D+++ K++ G L W + +++ F + ++ A +I ++++G+S+G+GFVTF +
Sbjct: 11 FGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDS 70
Query: 268 VEAALKTMNGVEVQGRELRLNLAAV 292
A+ N V + GR+ N+A+
Sbjct: 71 ATRAVADPNPV-IDGRKANCNIASF 94
>AT3G47120.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:17351334-17352769 REVERSE LENGTH=352
Length = 352
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 42/74 (56%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMF 172
+YVG +P+ +T L +F + G +V V ++ D+ T +S+GFAF+ A+
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97
Query: 173 DGSQVGGRIVRVNF 186
+G+ V GR ++V+
Sbjct: 98 NGALVLGRTIKVDH 111
>AT5G44200.2 | Symbols: CBP20, ATCBP20 | CAP-binding protein 20 |
chr5:17802062-17803875 REVERSE LENGTH=257
Length = 257
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMF 172
+Y+GN+ + T QL E+F AG + + + D+ T GF FV S +D ++A++
Sbjct: 36 VYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTEDAVKYI 95
Query: 173 DGSQVGGRIVRVNF 186
G+ + R +RV+F
Sbjct: 96 SGTILDDRPIRVDF 109
>AT5G44200.1 | Symbols: CBP20, ATCBP20 | CAP-binding protein 20 |
chr5:17802062-17803875 REVERSE LENGTH=257
Length = 257
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMF 172
+Y+GN+ + T QL E+F AG + + + D+ T GF FV S +D ++A++
Sbjct: 36 VYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTEDAVKYI 95
Query: 173 DGSQVGGRIVRVNF 186
G+ + R +RV+F
Sbjct: 96 SGTILDDRPIRVDF 109
>AT5G47620.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304106 REVERSE LENGTH=371
Length = 371
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 12/89 (13%)
Query: 108 SDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKE 167
S+ ++++VG L S+T ++ + F + G + V VMYD T R RGF F++ D++E
Sbjct: 43 SNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISY----DSEE 98
Query: 168 AI-----RMFDGSQVGGRIVRVNFPEVPK 191
A+ + F ++ G++V V VPK
Sbjct: 99 AVDKVLQKTFH--ELNGKMVEVKL-AVPK 124
>AT5G54580.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22171332-22172656 FORWARD LENGTH=156
Length = 156
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 9/97 (9%)
Query: 86 PEPETETSDKPQQEEEQKVSTSSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYD 145
P+ E++T +PQ E L+V L TS L F + G V +V+ D
Sbjct: 40 PQAESQTPARPQAEPSTN---------LFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTD 90
Query: 146 RVTDRSRGFAFVTMGSVDDAKEAIRMFDGSQVGGRIV 182
RV+ S+GF FV +++D+ + I DG + G ++
Sbjct: 91 RVSGYSKGFGFVRYATLEDSAKGIAGMDGKFLDGWVI 127
>AT1G29400.2 | Symbols: AML5, ML5 | MEI2-like protein 5 |
chr1:10290393-10293696 REVERSE LENGTH=800
Length = 800
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 80/177 (45%), Gaps = 23/177 (12%)
Query: 111 RRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIR 170
R L+V N+ ++ S+LT +F + G + +Y T + RGF ++ + A+ A+R
Sbjct: 168 RTLFVRNINSNVEDSELTALFEQYG---DIRTLY--TTCKHRGFVMISYYDIRSARMAMR 222
Query: 171 MFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSSQDL 230
+ R + ++F +PK P ++ N+ + NL +S+ DL
Sbjct: 223 SLQNKPLRRRKLDIHF-SIPKD------NPSEKDMNQG------TLVVFNLDPSISNDDL 269
Query: 231 KDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQGRELRL 287
+F ++ R++ R FV F + EAALK +N E+ G+ +++
Sbjct: 270 HGIFGAH-----GEIKEIRETPHKRHHKFVEFYDVRGAEAALKALNRCEIAGKRIKV 321
>AT1G29400.1 | Symbols: AML5, ML5 | MEI2-like protein 5 |
chr1:10290393-10293696 REVERSE LENGTH=800
Length = 800
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 80/177 (45%), Gaps = 23/177 (12%)
Query: 111 RRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIR 170
R L+V N+ ++ S+LT +F + G + +Y T + RGF ++ + A+ A+R
Sbjct: 168 RTLFVRNINSNVEDSELTALFEQYG---DIRTLY--TTCKHRGFVMISYYDIRSARMAMR 222
Query: 171 MFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSSQDL 230
+ R + ++F +PK P ++ N+ + NL +S+ DL
Sbjct: 223 SLQNKPLRRRKLDIHF-SIPKD------NPSEKDMNQG------TLVVFNLDPSISNDDL 269
Query: 231 KDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQGRELRL 287
+F ++ R++ R FV F + EAALK +N E+ G+ +++
Sbjct: 270 HGIFGAH-----GEIKEIRETPHKRHHKFVEFYDVRGAEAALKALNRCEIAGKRIKV 321
>AT3G52660.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19522598-19524735 FORWARD LENGTH=471
Length = 471
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 73/164 (44%), Gaps = 23/164 (14%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMF 172
+Y+G +P T L G V V +M ++ + +G+AFVT S D A EAI
Sbjct: 94 VYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDTL 153
Query: 173 DGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSSQDLKD 232
+ + G+ ++ + + RL +G N R++++S K A +G
Sbjct: 154 NNTDFRGKRIKCS---TTQAKHRLFLG----NVPRNWMESDIKKAANRIG---------- 196
Query: 233 VFAEQPGLVSAKVIYE-RDSGRSRGFGFVTFETAQDVEAALKTM 275
PG+ ++ E ++ GR+RGF F+ + E + + M
Sbjct: 197 -----PGVQIVELPKEPQNMGRNRGFAFIEYYNHACAEYSKQKM 235
>AT3G52660.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19522598-19524735 FORWARD LENGTH=471
Length = 471
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 73/164 (44%), Gaps = 23/164 (14%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMF 172
+Y+G +P T L G V V +M ++ + +G+AFVT S D A EAI
Sbjct: 94 VYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDTL 153
Query: 173 DGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSSQDLKD 232
+ + G+ ++ + + RL +G N R++++S K A +G
Sbjct: 154 NNTDFRGKRIKCS---TTQAKHRLFLG----NVPRNWMESDIKKAANRIG---------- 196
Query: 233 VFAEQPGLVSAKVIYE-RDSGRSRGFGFVTFETAQDVEAALKTM 275
PG+ ++ E ++ GR+RGF F+ + E + + M
Sbjct: 197 -----PGVQIVELPKEPQNMGRNRGFAFIEYYNHACAEYSKQKM 235
>AT4G36690.3 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor,
large subunit, splicing factor | chr4:17294422-17297609
REVERSE LENGTH=565
Length = 565
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/198 (20%), Positives = 84/198 (42%), Gaps = 19/198 (9%)
Query: 111 RRLYVGNLPYSMTSSQLTEIF------VEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDD 164
RR+YVG L + + F V T + + + + + FAFV M SV++
Sbjct: 239 RRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEE 298
Query: 165 AKEAIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDF------------VDS 212
A A+ + DG G V+V P +GP + + + ++
Sbjct: 299 ASNAMSL-DGIIFEGAPVKVRRPSDYNPSLAATLGPSQPSPHLNLAAVGLTPGASGGLEG 357
Query: 213 SHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAAL 272
+I+ G L + + ++++ GL ++ +R++G S+G+ F ++ + A
Sbjct: 358 PDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIAC 417
Query: 273 KTMNGVEVQGRELRLNLA 290
+NG+++ + L + A
Sbjct: 418 AALNGIKMGDKTLTVRRA 435
>AT3G56860.5 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/165 (19%), Positives = 74/165 (44%), Gaps = 4/165 (2%)
Query: 111 RRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIR 170
R+++V L + + L E F + G + + ++D+++ +S+G+ F+ S A+ A++
Sbjct: 140 RKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALK 199
Query: 171 MFDGSQVGGRIVRVNFPE---VPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSS 227
++G R+ V G + + + KIY N+G +
Sbjct: 200 QPQ-KKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDP 258
Query: 228 QDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAAL 272
Q L F++ + + ++ +GR +GF +++++ + AL
Sbjct: 259 QKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRAL 303
>AT3G56860.4 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/165 (19%), Positives = 74/165 (44%), Gaps = 4/165 (2%)
Query: 111 RRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIR 170
R+++V L + + L E F + G + + ++D+++ +S+G+ F+ S A+ A++
Sbjct: 140 RKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALK 199
Query: 171 MFDGSQVGGRIVRVNFPE---VPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSS 227
++G R+ V G + + + KIY N+G +
Sbjct: 200 QPQ-KKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDP 258
Query: 228 QDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAAL 272
Q L F++ + + ++ +GR +GF +++++ + AL
Sbjct: 259 QKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRAL 303
>AT3G56860.2 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/165 (19%), Positives = 74/165 (44%), Gaps = 4/165 (2%)
Query: 111 RRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIR 170
R+++V L + + L E F + G + + ++D+++ +S+G+ F+ S A+ A++
Sbjct: 140 RKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALK 199
Query: 171 MFDGSQVGGRIVRVNFPE---VPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSS 227
++G R+ V G + + + KIY N+G +
Sbjct: 200 QPQ-KKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDP 258
Query: 228 QDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAAL 272
Q L F++ + + ++ +GR +GF +++++ + AL
Sbjct: 259 QKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRAL 303
>AT3G56860.1 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/165 (19%), Positives = 74/165 (44%), Gaps = 4/165 (2%)
Query: 111 RRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIR 170
R+++V L + + L E F + G + + ++D+++ +S+G+ F+ S A+ A++
Sbjct: 140 RKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALK 199
Query: 171 MFDGSQVGGRIVRVNFPE---VPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSS 227
++G R+ V G + + + KIY N+G +
Sbjct: 200 QPQ-KKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDP 258
Query: 228 QDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAAL 272
Q L F++ + + ++ +GR +GF +++++ + AL
Sbjct: 259 QKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRAL 303
>AT3G56860.3 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/165 (19%), Positives = 74/165 (44%), Gaps = 4/165 (2%)
Query: 111 RRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIR 170
R+++V L + + L E F + G + + ++D+++ +S+G+ F+ S A+ A++
Sbjct: 140 RKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALK 199
Query: 171 MFDGSQVGGRIVRVNFPE---VPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSS 227
++G R+ V G + + + KIY N+G +
Sbjct: 200 QPQ-KKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDP 258
Query: 228 QDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAAL 272
Q L F++ + + ++ +GR +GF +++++ + AL
Sbjct: 259 QKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRAL 303
>AT3G54770.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:20273863-20275827 REVERSE LENGTH=261
Length = 261
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 51/94 (54%), Gaps = 3/94 (3%)
Query: 215 KIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKT 274
K++ G L W + + D F + ++ A +I ++ + RS+G+GFVTF+ A+ A +
Sbjct: 18 KVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACED 77
Query: 275 MNGVEVQGRELRLNLAAV--KAPSSPSVTEENEG 306
+ + GR NLA++ + SP++T +G
Sbjct: 78 STPI-INGRRANCNLASLGGRLRKSPTMTSPQQG 110
>AT4G02430.2 | Symbols: SR34b, At-SR34b | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr4:1069186-1071313 FORWARD
LENGTH=278
Length = 278
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 6/90 (6%)
Query: 106 TSSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDA 165
+S R +YVGNLP + ++ ++F + G VV +++ ++ R G+AFV DA
Sbjct: 2 SSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDL---KIPPRPPGYAFVEFEDARDA 58
Query: 166 KEAIRMFDGSQVGGRIVRVNFPEVPKGGER 195
+AI DG G +RV E+ GG R
Sbjct: 59 DDAIYGRDGYDFDGHHLRV---ELAHGGRR 85
>AT4G36690.2 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor,
large subunit, splicing factor | chr4:17294591-17297609
REVERSE LENGTH=542
Length = 542
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/198 (20%), Positives = 84/198 (42%), Gaps = 19/198 (9%)
Query: 111 RRLYVGNLPYSMTSSQLTEIF------VEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDD 164
RR+YVG L + + F V T + + + + + FAFV M SV++
Sbjct: 239 RRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEE 298
Query: 165 AKEAIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDF------------VDS 212
A A+ + DG G V+V P +GP + + + ++
Sbjct: 299 ASNAMSL-DGIIFEGAPVKVRRPSDYNPSLAATLGPSQPSPHLNLAAVGLTPGASGGLEG 357
Query: 213 SHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAAL 272
+I+ G L + + ++++ GL ++ +R++G S+G+ F ++ + A
Sbjct: 358 PDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIAC 417
Query: 273 KTMNGVEVQGRELRLNLA 290
+NG+++ + L + A
Sbjct: 418 AALNGIKMGDKTLTVRRA 435
>AT5G59860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:24113462-24114449 FORWARD LENGTH=157
Length = 157
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 45/74 (60%), Gaps = 6/74 (8%)
Query: 225 VSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQGRE 284
+ Q L+ +FA A++I ++ + R +GFGF+TFE+ D + ALK +NG V GR
Sbjct: 82 TTDQSLRQLFAP-----FARLIKDQQTQRPKGFGFITFESEDDAQKALKALNGKIVNGRL 136
Query: 285 LRLNLAA-VKAPSS 297
+ + A V+AP++
Sbjct: 137 IFVETAKEVEAPTT 150
>AT4G02430.1 | Symbols: SR34b, At-SR34b | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr4:1069186-1070543 FORWARD
LENGTH=178
Length = 178
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 6/90 (6%)
Query: 106 TSSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDA 165
+S R +YVGNLP + ++ ++F + G VV +++ ++ R G+AFV DA
Sbjct: 2 SSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDL---KIPPRPPGYAFVEFEDARDA 58
Query: 166 KEAIRMFDGSQVGGRIVRVNFPEVPKGGER 195
+AI DG G +RV E+ GG R
Sbjct: 59 DDAIYGRDGYDFDGHHLRV---ELAHGGRR 85
>AT2G41060.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:17127138-17128493 FORWARD LENGTH=451
Length = 451
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/163 (19%), Positives = 72/163 (44%), Gaps = 4/163 (2%)
Query: 111 RRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIR 170
R+++V L + + L + F + G + + + D+V+ +S+G+ F+ S A+ A++
Sbjct: 128 RKIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALK 187
Query: 171 MFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSSQDL 230
++G R+ + V+ P N + KIY N+ + Q L
Sbjct: 188 QPQ-KKIGTRMTACQLASIGPVQGNPVVAPAQHFNPENV---QRKIYVSNVSADIDPQKL 243
Query: 231 KDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALK 273
+ F+ + + ++ +GR +GF + + + + AL+
Sbjct: 244 LEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALE 286
>AT2G41060.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:17127138-17128493 FORWARD LENGTH=451
Length = 451
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/163 (19%), Positives = 72/163 (44%), Gaps = 4/163 (2%)
Query: 111 RRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIR 170
R+++V L + + L + F + G + + + D+V+ +S+G+ F+ S A+ A++
Sbjct: 128 RKIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALK 187
Query: 171 MFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSSQDL 230
++G R+ + V+ P N + KIY N+ + Q L
Sbjct: 188 QPQ-KKIGTRMTACQLASIGPVQGNPVVAPAQHFNPENV---QRKIYVSNVSADIDPQKL 243
Query: 231 KDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALK 273
+ F+ + + ++ +GR +GF + + + + AL+
Sbjct: 244 LEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALE 286
>AT5G07290.1 | Symbols: AML4, ML4 | MEI2-like 4 |
chr5:2294248-2298491 FORWARD LENGTH=907
Length = 907
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 84/191 (43%), Gaps = 30/191 (15%)
Query: 111 RRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIR 170
R L+V N+ S+ +L +F + G V ++ ++RGF V+ + A++A R
Sbjct: 211 RILFVRNVDSSIEDCELGVLFKQFGDVRALHT-----AGKNRGFIMVSYYDIRAAQKAAR 265
Query: 171 MFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSSQDL 230
G + GR + + + +PK N S ++ NL +S+++L
Sbjct: 266 ALHGRLLRGRKLDIRY-SIPK-------------ENPKENSSEGALWVNNLDSSISNEEL 311
Query: 231 KDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQGRELRLNLA 290
+F+ + + +S ++ F + + AL+ +NG+EV GR+L+L
Sbjct: 312 HGIFSSYGEIREVRRTMHENSQV-----YIEFFDVRKAKVALQGLNGLEVAGRQLKL--- 363
Query: 291 AVKAPSSPSVT 301
AP+ P T
Sbjct: 364 ---APTCPEGT 371
>AT5G04810.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:1390049-1393760 FORWARD LENGTH=952
Length = 952
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 16/127 (12%)
Query: 71 EVAQDSTDSRQDNPEPEPETETSDKPQQEEEQKVSTSSDDRRLYVGNLPYSMTSSQLTEI 130
E Q + R D PE ET PQQE Q + +++VGNLP + + E
Sbjct: 135 ETTQFRDEFRSDTKPPEEETRN---PQQEFRQ-------EGKIFVGNLPTWIKKPEFEEF 184
Query: 131 FVEAGTVVSVEVMY-DRVTDRSRGFAFVTMGSVDDAKEAIRMFDGSQVGGRIVRVNFPEV 189
F + G + +V ++ +++ GF F+ + A +A+ FDG + GRI+ V +
Sbjct: 185 FRQFGPIENVILIKGHHEVEKNAGFGFIIYAAEKSAMKAVE-FDGVEFHGRILTVKLDD- 242
Query: 190 PKGGERL 196
G+RL
Sbjct: 243 ---GKRL 246
>AT4G36690.1 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor,
large subunit, splicing factor | chr4:17294139-17297609
REVERSE LENGTH=573
Length = 573
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/198 (20%), Positives = 84/198 (42%), Gaps = 19/198 (9%)
Query: 111 RRLYVGNLPYSMTSSQLTEIF------VEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDD 164
RR+YVG L + + F V T + + + + + FAFV M SV++
Sbjct: 239 RRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEE 298
Query: 165 AKEAIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDF------------VDS 212
A A+ + DG G V+V P +GP + + + ++
Sbjct: 299 ASNAMSL-DGIIFEGAPVKVRRPSDYNPSLAATLGPSQPSPHLNLAAVGLTPGASGGLEG 357
Query: 213 SHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAAL 272
+I+ G L + + ++++ GL ++ +R++G S+G+ F ++ + A
Sbjct: 358 PDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIAC 417
Query: 273 KTMNGVEVQGRELRLNLA 290
+NG+++ + L + A
Sbjct: 418 AALNGIKMGDKTLTVRRA 435
>AT4G36690.4 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor,
large subunit, splicing factor | chr4:17294139-17297609
REVERSE LENGTH=551
Length = 551
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/198 (20%), Positives = 84/198 (42%), Gaps = 19/198 (9%)
Query: 111 RRLYVGNLPYSMTSSQLTEIF------VEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDD 164
RR+YVG L + + F V T + + + + + FAFV M SV++
Sbjct: 217 RRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEE 276
Query: 165 AKEAIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDF------------VDS 212
A A+ + DG G V+V P +GP + + + ++
Sbjct: 277 ASNAMSL-DGIIFEGAPVKVRRPSDYNPSLAATLGPSQPSPHLNLAAVGLTPGASGGLEG 335
Query: 213 SHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAAL 272
+I+ G L + + ++++ GL ++ +R++G S+G+ F ++ + A
Sbjct: 336 PDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIAC 395
Query: 273 KTMNGVEVQGRELRLNLA 290
+NG+++ + L + A
Sbjct: 396 AALNGIKMGDKTLTVRRA 413