Miyakogusa Predicted Gene

Lj1g3v4730390.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4730390.1 Non Chatacterized Hit- tr|I0YUZ3|I0YUZ3_9CHLO
Uncharacterized protein OS=Coccomyxa subellipsoidea
C-,45.71,0.000003,UNKNOWN PROTEIN,NULL; 34 KDA TRANSCRIPTIONAL
CO-ACTIVATOR-RELATED,NULL; seg,NULL; Med27,Mediator com,CUFF.33060.1
         (317 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G09180.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Mediator c...   377   e-105

>AT3G09180.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Mediator
           complex subunit Med27 (InterPro:IPR021627); Has 112
           Blast hits to 112 proteins in 38 species: Archae - 0;
           Bacteria - 0; Metazoa - 79; Fungi - 0; Plants - 23;
           Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
           | chr3:2819278-2821096 FORWARD LENGTH=402
          Length = 402

 Score =  377 bits (967), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 188/315 (59%), Positives = 235/315 (74%), Gaps = 15/315 (4%)

Query: 1   MEESGVLGESVRSRKDFWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFT 60
           +EESGVL ES+RSR + WGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFT
Sbjct: 95  LEESGVLTESLRSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFT 154

Query: 61  DQKRRFFPHLDDGLETNESASKKFRGSEEVTVDTKEEVSFFRTVQDVLKSLEKDVPNVKI 120
           DQKRRFFPH+DDGL+  E +SKK R S  +  + +EE   ++T+ D+   LEK VP+VK+
Sbjct: 155 DQKRRFFPHIDDGLKM-EPSSKKHRASHLLLENGREEPVDYKTLPDIQSRLEKLVPSVKV 213

Query: 121 STFERLDWLKRAXXXXXXXXXXXXXHNYP---GSSKLRLGSVGTVAAEKVAVIELLFPSI 177
           ST+ RL+WLKRA              + P    SSKLR G + T   +K+AVIEL FPS+
Sbjct: 214 STYGRLNWLKRANSLPGSGSDDPTEASKPIFQSSSKLRSG-LQTEVVDKIAVIELSFPSL 272

Query: 178 FRAVISLHPAGSIDPDAVAFFAPDESGSYVHARGFSVHHVNRHITDYAAVALQYFLGNQP 237
           FRA++SL PAGS+DPDAVAFF+PDE GSY+HARGFSV+HV +HIT++AA ALQYFLG   
Sbjct: 273 FRAIVSLSPAGSVDPDAVAFFSPDEGGSYLHARGFSVYHVYKHITEHAATALQYFLGFGT 332

Query: 238 ETSLYSLLHWISSYQTLFSRPCSKCSKLLAMDKQTNLLLPPVHRPYWKFSFSKILSNISL 297
            T+LYSLL WI S++++FS+PC+KC +LLAMDK++ L+LPP+HR Y +   +        
Sbjct: 333 GTALYSLLLWICSFESVFSKPCTKCGRLLAMDKKSALILPPLHRAYQELPLA-------- 384

Query: 298 KDQNSDTTQAYHTGC 312
              N D  +AYH+ C
Sbjct: 385 --LNLDVCEAYHSSC 397