Miyakogusa Predicted Gene

Lj1g3v4730380.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4730380.1 Non Chatacterized Hit- tr|Q4P6G2|Q4P6G2_USTMA
Putative uncharacterized protein OS=Ustilago maydis (s,34.59,4e-16,no
description,Armadillo-like helical; TESTIS EXPRESSED GENE
10-RELATED,NULL; UNCHARACTERIZED,NULL,CUFF.33063.1
         (163 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G06350.1 | Symbols:  | ARM repeat superfamily protein | chr5:...   234   2e-62
AT5G27010.1 | Symbols:  | ARM repeat superfamily protein | chr5:...   191   2e-49
AT4G04680.1 | Symbols:  | INVOLVED IN: biological_process unknow...   160   4e-40

>AT5G06350.1 | Symbols:  | ARM repeat superfamily protein |
           chr5:1938781-1944197 FORWARD LENGTH=877
          Length = 877

 Score =  234 bits (596), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 118/163 (72%), Positives = 135/163 (82%)

Query: 1   MTRPKANSKKQRGGGVDFKKIRRKIGRKLPPPKNTTNTEIKSKAIVLPEQSVAAEKTGLA 60
           M R KA +KKQ+  G+DFKKI+RK+GRKLPPPKN TNTEIKSKAI+LPEQSVAAEK+GLA
Sbjct: 1   MVRSKAPAKKQQKKGIDFKKIKRKLGRKLPPPKNATNTEIKSKAIILPEQSVAAEKSGLA 60

Query: 61  VNKKGLTLKELLQQTSHHNAKVRRDALTGIKDLFNKYPAELKLHKYAAVEKLRERIGDDD 120
            +KKGLTLKELL QTSHHNAKVR+DAL GIKDLF  +P EL+ HKYA ++KLRERI DDD
Sbjct: 61  TSKKGLTLKELLPQTSHHNAKVRKDALYGIKDLFKNHPEELQSHKYAIIQKLRERISDDD 120

Query: 121 KVVRKSLYDLFKLVILPGCKEDNQELITSLLMAYIFNAMTHLA 163
           K+VR   Y LF + I P CKEDNQ L+ SLLM YIF+AM H A
Sbjct: 121 KLVRDVFYQLFDIDIFPLCKEDNQGLMVSLLMPYIFSAMAHSA 163


>AT5G27010.1 | Symbols:  | ARM repeat superfamily protein |
           chr5:9503315-9507569 REVERSE LENGTH=863
          Length = 863

 Score =  191 bits (484), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 101/161 (62%), Positives = 119/161 (73%), Gaps = 2/161 (1%)

Query: 1   MTRPKANSKKQRGGGVDFKKIRRKIGRKLPPPKNTTNTEIKSKAIVLPEQSVAAEKTGLA 60
           M+R KA ++KQ+  G+DFKKI+RK+GRKLPPP N TNTEIKSKAI+L EQSVAAE+ G A
Sbjct: 1   MSRSKAPARKQQKKGIDFKKIKRKLGRKLPPPNNATNTEIKSKAIILHEQSVAAERDGFA 60

Query: 61  VNKKGLTLKELLQQTSHHNAKVRRDALTGIKDLFNKYPAELKLHKYAAVEKLRERIGDDD 120
            +KKGLTL EL  +T H NAKVR+DAL GIKDL   +PAEL  +KYA   KLRE I DDD
Sbjct: 61  TSKKGLTLLELKNRTGHPNAKVRKDALHGIKDLLKHHPAELLSNKYATTHKLRELITDDD 120

Query: 121 KVVRKSLYDLFKLVILPGCKED-NQELITSLLMAYIFNAMT 160
           K+VR   Y L   + L  CKED N+ L+ S LM YIF AMT
Sbjct: 121 KLVRDDFYTLLTGIFL-ACKEDINKGLMVSSLMPYIFTAMT 160


>AT4G04680.1 | Symbols:  | INVOLVED IN: biological_process unknown;
           LOCATED IN: endomembrane system; BEST Arabidopsis
           thaliana protein match is: ARM repeat superfamily
           protein (TAIR:AT5G06350.1); Has 30201 Blast hits to
           17322 proteins in 780 species: Archae - 12; Bacteria -
           1396; Metazoa - 17338; Fungi - 3422; Plants - 5037;
           Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
           BLink). | chr4:2372266-2373327 FORWARD LENGTH=261
          Length = 261

 Score =  160 bits (405), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 77/120 (64%), Positives = 95/120 (79%)

Query: 42  SKAIVLPEQSVAAEKTGLAVNKKGLTLKELLQQTSHHNAKVRRDALTGIKDLFNKYPAEL 101
           + A++L EQ+VAAEK+GLA +KKGLTLK+LL QTSH NAK+R+DAL G+KDL   +PAEL
Sbjct: 23  AAAMILAEQNVAAEKSGLATSKKGLTLKDLLPQTSHCNAKLRKDALNGLKDLLKNHPAEL 82

Query: 102 KLHKYAAVEKLRERIGDDDKVVRKSLYDLFKLVILPGCKEDNQELITSLLMAYIFNAMTH 161
           + HKYA ++KLRERI DDD +VR +LY LF+ VILP CK DNQ  + SLLM YI  AM H
Sbjct: 83  QSHKYAIIQKLRERIMDDDSLVRDALYQLFESVILPACKNDNQSPMVSLLMPYISCAMAH 142