Miyakogusa Predicted Gene
- Lj1g3v4729110.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v4729110.1 tr|G7IE43|G7IE43_MEDTR Lysine decarboxylase-like
protein OS=Medicago truncatula GN=MTR_1g105240 PE=4,89.24,0,no
description,NULL; seg,NULL; TIGR00730: TIGR00730 family
protein,Cytokinin riboside
5'-monophospha,NODE_61564_length_628_cov_26.076433.path1.1
(163 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G06300.1 | Symbols: | Putative lysine decarboxylase family p... 244 2e-65
AT2G37210.1 | Symbols: | lysine decarboxylase family protein | ... 237 2e-63
AT3G53450.1 | Symbols: | Putative lysine decarboxylase family p... 235 1e-62
AT2G35990.1 | Symbols: | Putative lysine decarboxylase family p... 230 3e-61
AT2G35990.3 | Symbols: | Putative lysine decarboxylase family p... 230 3e-61
AT2G35990.2 | Symbols: | Putative lysine decarboxylase family p... 230 3e-61
AT2G28305.1 | Symbols: LOG1, ATLOG1 | Putative lysine decarboxyl... 224 3e-59
AT2G37210.2 | Symbols: | lysine decarboxylase family protein | ... 222 7e-59
AT4G35190.1 | Symbols: | Putative lysine decarboxylase family p... 201 3e-52
AT5G11950.2 | Symbols: | Putative lysine decarboxylase family p... 186 5e-48
AT5G11950.1 | Symbols: | Putative lysine decarboxylase family p... 186 5e-48
AT5G03270.1 | Symbols: | lysine decarboxylase family protein | ... 171 2e-43
AT5G26140.1 | Symbols: LOG9, ATLOG9 | Putative lysine decarboxyl... 132 9e-32
>AT5G06300.1 | Symbols: | Putative lysine decarboxylase family
protein | chr5:1922042-1925278 REVERSE LENGTH=217
Length = 217
Score = 244 bits (623), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 123/160 (76%), Positives = 131/160 (81%), Gaps = 2/160 (1%)
Query: 1 MGLVSQAVHDGGRHVLGVIPTSLMPREITGAPIGEVRAVSNMHQRKAEMARQADAFIALP 60
MGLVSQAVH GGRHVLGVIP +LMPREITG IGEV+AV++MHQRKAEMARQADAFIALP
Sbjct: 53 MGLVSQAVHHGGRHVLGVIPKTLMPREITGETIGEVKAVADMHQRKAEMARQADAFIALP 112
Query: 61 GGYGTLEELLEVITWAQLGIHTKPVGLLNVDGFYNSLLCFIDKAVDEGFISPTARRIIVS 120
GGYGTLEELLEVITWAQLGIH KPVGLLNVDG+YNSLL FIDKAVDEGFISP ARRIIVS
Sbjct: 113 GGYGTLEELLEVITWAQLGIHRKPVGLLNVDGYYNSLLTFIDKAVDEGFISPMARRIIVS 172
Query: 121 APTAKXXXXXXXXXXXXXXXFASKLVWE--DRLTYVTESE 158
AP AK SKLVW+ DR++YV SE
Sbjct: 173 APNAKELVRQLEEYEPEFDEITSKLVWDEVDRISYVPGSE 212
>AT2G37210.1 | Symbols: | lysine decarboxylase family protein |
chr2:15624253-15626834 REVERSE LENGTH=215
Length = 215
Score = 237 bits (605), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 115/157 (73%), Positives = 130/157 (82%), Gaps = 1/157 (0%)
Query: 1 MGLVSQAVHDGGRHVLGVIPTSLMPREITGAPIGEVRAVSNMHQRKAEMARQADAFIALP 60
MGLVSQAVHDGGRHV+G+IP +LMPRE+TG +GEVRAV++MHQRKAEMA+ +DAFIALP
Sbjct: 58 MGLVSQAVHDGGRHVIGIIPKTLMPRELTGETVGEVRAVADMHQRKAEMAKHSDAFIALP 117
Query: 61 GGYGTLEELLEVITWAQLGIHTKPVGLLNVDGFYNSLLCFIDKAVDEGFISPTARRIIVS 120
GGYGTLEELLEVITWAQLGIH KPVGLLNVDG+YNSLL FIDKAV+EGFISPTAR IIVS
Sbjct: 118 GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPTAREIIVS 177
Query: 121 APTAKXXXXXXXXXXXXXXXFASKLVWE-DRLTYVTE 156
APTAK A+KL WE +R+ Y +E
Sbjct: 178 APTAKELVKKLEEYAPCHERVATKLCWEMERIGYSSE 214
>AT3G53450.1 | Symbols: | Putative lysine decarboxylase family
protein | chr3:19812977-19815430 REVERSE LENGTH=215
Length = 215
Score = 235 bits (599), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 114/157 (72%), Positives = 129/157 (82%), Gaps = 1/157 (0%)
Query: 1 MGLVSQAVHDGGRHVLGVIPTSLMPREITGAPIGEVRAVSNMHQRKAEMARQADAFIALP 60
MGLVSQAVHDGGRHV+GVIP +LMPRE+TG +GEVRAV++MHQRKAEMAR +DAFIALP
Sbjct: 58 MGLVSQAVHDGGRHVIGVIPKTLMPRELTGETVGEVRAVADMHQRKAEMARHSDAFIALP 117
Query: 61 GGYGTLEELLEVITWAQLGIHTKPVGLLNVDGFYNSLLCFIDKAVDEGFISPTARRIIVS 120
GGYGTLEELLEVITWAQLGIH KPVGLLNVDG+YNSLL FIDKAV+EGFIS AR+II+S
Sbjct: 118 GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISTNARQIIIS 177
Query: 121 APTAKXXXXXXXXXXXXXXXFASKLVWE-DRLTYVTE 156
APTAK A+KL WE +R+ Y +E
Sbjct: 178 APTAKELVKKLEEYSPCHESVATKLCWEIERIDYSSE 214
>AT2G35990.1 | Symbols: | Putative lysine decarboxylase family
protein | chr2:15114070-15116647 FORWARD LENGTH=213
Length = 213
Score = 230 bits (587), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 112/149 (75%), Positives = 120/149 (80%)
Query: 1 MGLVSQAVHDGGRHVLGVIPTSLMPREITGAPIGEVRAVSNMHQRKAEMARQADAFIALP 60
MGL+SQAVHDGGRHVLG+IP SL PREITG IGEV VS MHQRKAEM RQADAFIALP
Sbjct: 53 MGLISQAVHDGGRHVLGIIPKSLAPREITGESIGEVITVSTMHQRKAEMGRQADAFIALP 112
Query: 61 GGYGTLEELLEVITWAQLGIHTKPVGLLNVDGFYNSLLCFIDKAVDEGFISPTARRIIVS 120
GGYGT EELLEVITW+QLGIHTKPVGLLNVDGFY+SLL FIDKAVDEGF+S TARRIIVS
Sbjct: 113 GGYGTFEELLEVITWSQLGIHTKPVGLLNVDGFYDSLLTFIDKAVDEGFVSSTARRIIVS 172
Query: 121 APTAKXXXXXXXXXXXXXXXFASKLVWED 149
AP A F SK+VW++
Sbjct: 173 APNAPQLLQLLEEYVPKHDDFVSKMVWDN 201
>AT2G35990.3 | Symbols: | Putative lysine decarboxylase family
protein | chr2:15114733-15116647 FORWARD LENGTH=161
Length = 161
Score = 230 bits (586), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 112/149 (75%), Positives = 120/149 (80%)
Query: 1 MGLVSQAVHDGGRHVLGVIPTSLMPREITGAPIGEVRAVSNMHQRKAEMARQADAFIALP 60
MGL+SQAVHDGGRHVLG+IP SL PREITG IGEV VS MHQRKAEM RQADAFIALP
Sbjct: 1 MGLISQAVHDGGRHVLGIIPKSLAPREITGESIGEVITVSTMHQRKAEMGRQADAFIALP 60
Query: 61 GGYGTLEELLEVITWAQLGIHTKPVGLLNVDGFYNSLLCFIDKAVDEGFISPTARRIIVS 120
GGYGT EELLEVITW+QLGIHTKPVGLLNVDGFY+SLL FIDKAVDEGF+S TARRIIVS
Sbjct: 61 GGYGTFEELLEVITWSQLGIHTKPVGLLNVDGFYDSLLTFIDKAVDEGFVSSTARRIIVS 120
Query: 121 APTAKXXXXXXXXXXXXXXXFASKLVWED 149
AP A F SK+VW++
Sbjct: 121 APNAPQLLQLLEEYVPKHDDFVSKMVWDN 149
>AT2G35990.2 | Symbols: | Putative lysine decarboxylase family
protein | chr2:15114733-15116647 FORWARD LENGTH=161
Length = 161
Score = 230 bits (586), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 112/149 (75%), Positives = 120/149 (80%)
Query: 1 MGLVSQAVHDGGRHVLGVIPTSLMPREITGAPIGEVRAVSNMHQRKAEMARQADAFIALP 60
MGL+SQAVHDGGRHVLG+IP SL PREITG IGEV VS MHQRKAEM RQADAFIALP
Sbjct: 1 MGLISQAVHDGGRHVLGIIPKSLAPREITGESIGEVITVSTMHQRKAEMGRQADAFIALP 60
Query: 61 GGYGTLEELLEVITWAQLGIHTKPVGLLNVDGFYNSLLCFIDKAVDEGFISPTARRIIVS 120
GGYGT EELLEVITW+QLGIHTKPVGLLNVDGFY+SLL FIDKAVDEGF+S TARRIIVS
Sbjct: 61 GGYGTFEELLEVITWSQLGIHTKPVGLLNVDGFYDSLLTFIDKAVDEGFVSSTARRIIVS 120
Query: 121 APTAKXXXXXXXXXXXXXXXFASKLVWED 149
AP A F SK+VW++
Sbjct: 121 APNAPQLLQLLEEYVPKHDDFVSKMVWDN 149
>AT2G28305.1 | Symbols: LOG1, ATLOG1 | Putative lysine decarboxylase
family protein | chr2:12081186-12084307 FORWARD
LENGTH=213
Length = 213
Score = 224 bits (570), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 108/148 (72%), Positives = 122/148 (82%)
Query: 1 MGLVSQAVHDGGRHVLGVIPTSLMPREITGAPIGEVRAVSNMHQRKAEMARQADAFIALP 60
MGL+SQAV +GGRHV+GVIP +LMPREITG +GEV+AV++MHQRKAEMA+ +DAFIALP
Sbjct: 52 MGLISQAVFNGGRHVIGVIPKTLMPREITGETVGEVKAVADMHQRKAEMAKHSDAFIALP 111
Query: 61 GGYGTLEELLEVITWAQLGIHTKPVGLLNVDGFYNSLLCFIDKAVDEGFISPTARRIIVS 120
GGYGTLEELLEVITWAQLGIH KPVGLLNV+G+YNSLL FIDKAV+EGFISPTAR IIVS
Sbjct: 112 GGYGTLEELLEVITWAQLGIHDKPVGLLNVEGYYNSLLSFIDKAVEEGFISPTARHIIVS 171
Query: 121 APTAKXXXXXXXXXXXXXXXFASKLVWE 148
AP+AK ASK WE
Sbjct: 172 APSAKELVKKLEDYVPRHEKVASKKSWE 199
>AT2G37210.2 | Symbols: | lysine decarboxylase family protein |
chr2:15624253-15626834 REVERSE LENGTH=239
Length = 239
Score = 222 bits (566), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 114/181 (62%), Positives = 129/181 (71%), Gaps = 25/181 (13%)
Query: 1 MGLVSQAVHDGGRHVLGVIPTSLMPREITGAPIGEVRAVSNMHQRKAEMARQADAFIALP 60
MGLVSQAVHDGGRHV+G+IP +LMPRE+TG +GEVRAV++MHQRKAEMA+ +DAFIALP
Sbjct: 58 MGLVSQAVHDGGRHVIGIIPKTLMPRELTGETVGEVRAVADMHQRKAEMAKHSDAFIALP 117
Query: 61 ------------------------GGYGTLEELLEVITWAQLGIHTKPVGLLNVDGFYNS 96
GYGTLEELLEVITWAQLGIH KPVGLLNVDG+YNS
Sbjct: 118 EENNLVKLKNMLSWSSCSVKATLKSGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNS 177
Query: 97 LLCFIDKAVDEGFISPTARRIIVSAPTAKXXXXXXXXXXXXXXXFASKLVWE-DRLTYVT 155
LL FIDKAV+EGFISPTAR IIVSAPTAK A+KL WE +R+ Y +
Sbjct: 178 LLSFIDKAVEEGFISPTAREIIVSAPTAKELVKKLEEYAPCHERVATKLCWEMERIGYSS 237
Query: 156 E 156
E
Sbjct: 238 E 238
>AT4G35190.1 | Symbols: | Putative lysine decarboxylase family
protein | chr4:16746724-16748090 FORWARD LENGTH=228
Length = 228
Score = 201 bits (510), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 95/125 (76%), Positives = 106/125 (84%)
Query: 1 MGLVSQAVHDGGRHVLGVIPTSLMPREITGAPIGEVRAVSNMHQRKAEMARQADAFIALP 60
MGLVSQAVH+ G HVLG+IP +LM +EITG GEV AV++MH+RKAEMAR +D FIALP
Sbjct: 53 MGLVSQAVHEAGGHVLGIIPRTLMDKEITGETYGEVIAVADMHERKAEMARHSDCFIALP 112
Query: 61 GGYGTLEELLEVITWAQLGIHTKPVGLLNVDGFYNSLLCFIDKAVDEGFISPTARRIIVS 120
GGYGTLEELLEVI WAQLGIH KPVGLLNVDG+YN LL FIDKAVD+GFI P+ R I VS
Sbjct: 113 GGYGTLEELLEVIAWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRHIFVS 172
Query: 121 APTAK 125
AP AK
Sbjct: 173 APNAK 177
>AT5G11950.2 | Symbols: | Putative lysine decarboxylase family
protein | chr5:3855072-3856815 FORWARD LENGTH=216
Length = 216
Score = 186 bits (472), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 88/148 (59%), Positives = 111/148 (75%)
Query: 1 MGLVSQAVHDGGRHVLGVIPTSLMPREITGAPIGEVRAVSNMHQRKAEMARQADAFIALP 60
MGL+S+ V++GG HVLG+IP +LMP EI+G +G+VR V++MH+RKA MA++A+AFIALP
Sbjct: 54 MGLISRRVYEGGLHVLGIIPKALMPIEISGETVGDVRVVADMHERKAAMAQEAEAFIALP 113
Query: 61 GGYGTLEELLEVITWAQLGIHTKPVGLLNVDGFYNSLLCFIDKAVDEGFISPTARRIIVS 120
GGYGT+EELLE+ITW+QLGIH K VGLLNVDG+YN+LL D V+EGFI P AR I+VS
Sbjct: 114 GGYGTMEELLEMITWSQLGIHKKTVGLLNVDGYYNNLLALFDTGVEEGFIKPGARNIVVS 173
Query: 121 APTAKXXXXXXXXXXXXXXXFASKLVWE 148
APTAK AS W+
Sbjct: 174 APTAKELMEKMEEYTPSHMHVASHESWK 201
>AT5G11950.1 | Symbols: | Putative lysine decarboxylase family
protein | chr5:3855072-3856815 FORWARD LENGTH=216
Length = 216
Score = 186 bits (472), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 88/148 (59%), Positives = 111/148 (75%)
Query: 1 MGLVSQAVHDGGRHVLGVIPTSLMPREITGAPIGEVRAVSNMHQRKAEMARQADAFIALP 60
MGL+S+ V++GG HVLG+IP +LMP EI+G +G+VR V++MH+RKA MA++A+AFIALP
Sbjct: 54 MGLISRRVYEGGLHVLGIIPKALMPIEISGETVGDVRVVADMHERKAAMAQEAEAFIALP 113
Query: 61 GGYGTLEELLEVITWAQLGIHTKPVGLLNVDGFYNSLLCFIDKAVDEGFISPTARRIIVS 120
GGYGT+EELLE+ITW+QLGIH K VGLLNVDG+YN+LL D V+EGFI P AR I+VS
Sbjct: 114 GGYGTMEELLEMITWSQLGIHKKTVGLLNVDGYYNNLLALFDTGVEEGFIKPGARNIVVS 173
Query: 121 APTAKXXXXXXXXXXXXXXXFASKLVWE 148
APTAK AS W+
Sbjct: 174 APTAKELMEKMEEYTPSHMHVASHESWK 201
>AT5G03270.1 | Symbols: | lysine decarboxylase family protein |
chr5:781870-783997 FORWARD LENGTH=229
Length = 229
Score = 171 bits (433), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 92/139 (66%), Positives = 107/139 (76%), Gaps = 17/139 (12%)
Query: 1 MGLVSQAVHDGGR--------------HVLGVIPTSLMPREITGAPIGEVRAVSNMHQRK 46
MGLVSQAVHDGGR H + V T+ ++TG +GEV+ V++MHQRK
Sbjct: 63 MGLVSQAVHDGGRHNNNNNGNDDALFCHSVNVSQTN---SKLTGETVGEVKEVADMHQRK 119
Query: 47 AEMARQADAFIALPGGYGTLEELLEVITWAQLGIHTKPVGLLNVDGFYNSLLCFIDKAVD 106
A MA+ +DAFI LPGGYGTLEELLEVITWAQLGIH KPVGLLNVDG+Y++LL FIDKAV+
Sbjct: 120 AVMAKHSDAFITLPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYDALLLFIDKAVE 179
Query: 107 EGFISPTARRIIVSAPTAK 125
EGFI PTAR IIVSAPTA+
Sbjct: 180 EGFILPTARHIIVSAPTAR 198
>AT5G26140.1 | Symbols: LOG9, ATLOG9 | Putative lysine decarboxylase
family protein | chr5:9130796-9131636 FORWARD LENGTH=143
Length = 143
Score = 132 bits (332), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 68/122 (55%), Positives = 83/122 (68%), Gaps = 1/122 (0%)
Query: 28 ITGAPIGEVRAVSNMHQRKAEMARQADAFIALPGG-YGTLEELLEVITWAQLGIHTKPVG 86
I+G +GEVR VS+MH+RKA MA++A AFIAL G Y T+EELLE+ITWAQLGIH K VG
Sbjct: 6 ISGETVGEVRIVSDMHERKATMAQEAGAFIALLGERYETMEELLEMITWAQLGIHKKTVG 65
Query: 87 LLNVDGFYNSLLCFIDKAVDEGFISPTARRIIVSAPTAKXXXXXXXXXXXXXXXFASKLV 146
LLNVDG+YN+LL F D V+EGFI A I+VSAP+A+ AS
Sbjct: 66 LLNVDGYYNNLLAFFDTGVEEGFIKQGACNIVVSAPSARELMEKMELYTPSHKYIASHQS 125
Query: 147 WE 148
W+
Sbjct: 126 WK 127