Miyakogusa Predicted Gene
- Lj1g3v4721720.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v4721720.1 Non Chatacterized Hit- tr|I1ND38|I1ND38_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,28.79,1e-16,PPR,Pentatricopeptide repeat; SUBFAMILY NOT
NAMED,NULL; FAMILY NOT NAMED,NULL,CUFF.33041.1
(261 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G39710.1 | Symbols: EMB2745 | Tetratricopeptide repeat (TPR)-... 212 2e-55
AT3G18110.1 | Symbols: EMB1270 | Pentatricopeptide repeat (PPR) ... 64 1e-10
AT4G11690.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 60 1e-09
AT5G59900.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 59 5e-09
AT1G63230.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 58 8e-09
AT3G53700.1 | Symbols: MEE40 | Pentatricopeptide repeat (PPR) su... 56 3e-08
AT1G09680.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 56 3e-08
AT1G63130.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 55 3e-08
AT1G62680.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 55 4e-08
AT1G63630.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 55 4e-08
AT3G16890.1 | Symbols: PPR40 | pentatricopeptide (PPR) domain pr... 55 4e-08
AT5G01110.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 55 5e-08
AT1G63080.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 55 5e-08
AT1G62910.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 55 6e-08
AT1G13800.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 55 6e-08
AT1G62930.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 54 1e-07
AT1G03560.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 54 2e-07
AT1G62670.1 | Symbols: RPF2 | rna processing factor 2 | chr1:232... 53 2e-07
AT1G74900.1 | Symbols: OTP43 | Pentatricopeptide repeat (PPR) su... 53 3e-07
AT1G20300.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 52 3e-07
AT1G64583.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 52 4e-07
AT1G05670.2 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 52 4e-07
AT1G05670.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 52 4e-07
AT5G61990.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 52 6e-07
AT4G20090.1 | Symbols: EMB1025 | Pentatricopeptide repeat (PPR) ... 52 6e-07
AT1G63070.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 51 6e-07
AT5G16420.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 51 7e-07
AT1G63150.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 51 9e-07
AT1G77340.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 51 1e-06
AT1G62590.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 50 1e-06
AT2G06000.2 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 50 1e-06
AT2G06000.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 50 1e-06
AT4G01400.3 | Symbols: | FUNCTIONS IN: molecular_function unkno... 50 1e-06
AT1G63330.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 50 1e-06
AT5G57250.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 50 2e-06
AT2G16880.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 50 2e-06
AT3G07290.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 49 2e-06
AT1G02060.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 49 3e-06
AT5G08310.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 49 3e-06
AT2G01740.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 49 4e-06
AT5G55840.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 49 5e-06
AT4G31850.1 | Symbols: PGR3 | proton gradient regulation 3 | chr... 48 7e-06
AT1G22960.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 48 8e-06
AT5G16640.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 48 8e-06
AT1G07740.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 48 8e-06
>AT5G39710.1 | Symbols: EMB2745 | Tetratricopeptide repeat
(TPR)-like superfamily protein | chr5:15895729-15897972
FORWARD LENGTH=747
Length = 747
Score = 212 bits (540), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 111/229 (48%), Positives = 157/229 (68%), Gaps = 2/229 (0%)
Query: 23 DEDTYSSLMNEYFAQGNLEKAYALEFDMDHDRYMLPCVTMSVFLNGLNKKARPSEAKWIL 82
DE TY++L+N Y +G+LEKA L +M + VT SV +NGLNK++R EAK +L
Sbjct: 519 DEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLL 578
Query: 83 LGKIFDWCSRFPTYIIYDTLIENCSNDEFKSVVGLVKGFSKRGLVSKAARAHDTMLEGNY 142
L K+F + P+ + Y TLIENCSN EFKSVV L+KGF +G++++A + ++ML N+
Sbjct: 579 L-KLF-YEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNH 636
Query: 143 KPDGAVYNLLIFDHCRCLNVRKAYNMYMEMVHYGFVPHMFSALALIKALHYCGRQNEMSW 202
KPDG YN++I HCR ++RKAY +Y EMV GF+ H + +AL+KALH G+ NE++
Sbjct: 637 KPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKEGKVNELNS 696
Query: 203 VIQNTLRSCNLNEFELPKVLNEIDFPKCQINALLDVLAEIAMDGLLLDG 251
VI + LRSC L+E E KVL EI+ + ++ +LDVLAE+A DG L +G
Sbjct: 697 VIVHVLRSCELSEAEQAKVLVEINHREGNMDVVLDVLAEMAKDGFLPNG 745
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 19/172 (11%)
Query: 23 DEDTYSSLMNEYFAQGNLEKAYALEFDMDHDRYMLPCVTMSVFLNGLNKKARPSEAKWIL 82
+E TY++L++ + +G + +AY + +M+ + + VT + +NG +
Sbjct: 379 NERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALING-----------HCV 427
Query: 83 LGKIFDWCSRFPTYIIYDTLIENCSNDEFKSVVGLVKGFSKRGLVSKAARAHDTMLEGNY 142
GK+ D + + + + E + + S ++ GF + V +A R M+E
Sbjct: 428 TGKMEDAIA------VLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGI 481
Query: 143 KPDGAVYNLLIFDHCRCLNVRKAYNMYMEMVHYGFVPHMFSALALIKALHYC 194
KPD Y+ LI C ++A ++Y EM+ G P F+ ALI A YC
Sbjct: 482 KPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINA--YC 531
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 71/174 (40%), Gaps = 17/174 (9%)
Query: 26 TYSSLMNEYFAQGNLEKAYALEFDMDHDRYMLPCVTMSVFLNGLNKKARPSEAKWILLGK 85
TY++L+N + G +E A A+ DM V+ S L+G + EA +
Sbjct: 417 TYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREM 476
Query: 86 IFDWCSRFPTYIIYDTLIENCSNDEFKSVVGLVKGFSKRGLVSKAARAHDTMLEGNYKPD 145
+ P I Y +LI+ GF ++ +A ++ ML PD
Sbjct: 477 VEKGIK--PDTITYSSLIQ---------------GFCEQRRTKEACDLYEEMLRVGLPPD 519
Query: 146 GAVYNLLIFDHCRCLNVRKAYNMYMEMVHYGFVPHMFSALALIKALHYCGRQNE 199
Y LI +C ++ KA ++ EMV G +P + + LI L+ R E
Sbjct: 520 EFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTRE 573
>AT3G18110.1 | Symbols: EMB1270 | Pentatricopeptide repeat (PPR)
superfamily protein | chr3:6204940-6209691 REVERSE
LENGTH=1440
Length = 1440
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 88/201 (43%), Gaps = 18/201 (8%)
Query: 23 DEDTYSSLMNEYFAQGNLEKAYALEFDMDHDRYMLP-CVTMSVFLNGLNKKARPSEAKWI 81
DE TY+++++ Y QG L+ A L DM P +T +V ++ L K R EA
Sbjct: 401 DEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAA-A 459
Query: 82 LLGKIFDWCSRFPTYIIYDTLIENCSNDEFKSVVGLVKGFSKRGLVSKAARAHDTMLEGN 141
L+ ++ D + PT Y LI C G++K G +A ML
Sbjct: 460 LMSEMLDVGIK-PTLQTYSALI--C-------------GYAKAGKREEAEDTFSCMLRSG 503
Query: 142 YKPDGAVYNLLIFDHCRCLNVRKAYNMYMEMVHYGFVPHMFSALALIKALHYCGRQNEMS 201
KPD Y++++ R RKA+ +Y +M+ G P +I L R +++
Sbjct: 504 TKPDNLAYSVMLDVLLRGNETRKAWGLYRDMISDGHTPSYTLYELMILGLMKENRSDDIQ 563
Query: 202 WVIQNTLRSCNLNEFELPKVL 222
I++ C +N E+ VL
Sbjct: 564 KTIRDMEELCGMNPLEISSVL 584
>AT4G11690.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr4:7056254-7057954 FORWARD
LENGTH=566
Length = 566
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 89/211 (42%), Gaps = 23/211 (10%)
Query: 26 TYSSLMNEYFAQGNLEKAYALEFDMDHDRYMLPCVTMSVFLNGLNKKARPSEAKWILLGK 85
TY+ +MN+ G + A+ + +M VT + + GL ++ + +EA ++
Sbjct: 270 TYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQM 329
Query: 86 IFDWCSRFPTYIIYDTLIEN-CSNDEFKSVVGL-------------------VKGFSKRG 125
D + P I Y+TLI+ C + + L V GF ++G
Sbjct: 330 KSDGIN--PNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKG 387
Query: 126 LVSKAARAHDTMLEGNYKPDGAVYNLLIFDHCRCLNVRKAYNMYMEMVHYGFVPHMFSAL 185
S AA+ M E KP Y +LI R N+ KA + + M G VP + +
Sbjct: 388 DTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYS 447
Query: 186 ALIKALHYCGRQNEMSWVIQNTL-RSCNLNE 215
LI G+ NE S + ++ + ++C NE
Sbjct: 448 VLIHGFCIKGQMNEASRLFKSMVEKNCEPNE 478
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 91/205 (44%), Gaps = 22/205 (10%)
Query: 26 TYSSLMNEYFAQGNLEKAYALEFDMDHDRYMLPCVTMSVFLNGLNKKARPSEAKWILLGK 85
TY++L++ + G L KA +L D+ VT ++ ++G +K S A ++ K
Sbjct: 340 TYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMV--K 397
Query: 86 IFDWCSRFPTYIIYDTLIEN-CSNDEFKSVVGL-------------------VKGFSKRG 125
+ P+ + Y LI+ +D + + L + GF +G
Sbjct: 398 EMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKG 457
Query: 126 LVSKAARAHDTMLEGNYKPDGAVYNLLIFDHCRCLNVRKAYNMYMEMVHYGFVPHMFSAL 185
+++A+R +M+E N +P+ +YN +I +C+ + +A + EM P++ S
Sbjct: 458 QMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYR 517
Query: 186 ALIKALHYCGRQNEMSWVIQNTLRS 210
+I+ L + E +++ + S
Sbjct: 518 YMIEVLCKERKSKEAERLVEKMIDS 542
>AT5G59900.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:24123983-24126706 REVERSE
LENGTH=907
Length = 907
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 59/255 (23%), Positives = 101/255 (39%), Gaps = 31/255 (12%)
Query: 26 TYSSLMNEYFAQGNLEKAYALEFDMDHDRYMLPCVTMSVFLNG----------------- 68
TYS L++ + +G L+ A + +M L + +NG
Sbjct: 404 TYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEM 463
Query: 69 LNKKARPSEAKWILLGKIFDWCSRFP---TYIIYDTLIENCSNDEFKSVVGLVKGFSKRG 125
+NKK P+ + L + +CS+ +Y + + L+ G + G
Sbjct: 464 INKKLEPTVVTYTSL--MGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAG 521
Query: 126 LVSKAARAHDTMLEGNYKPDGAVYNLLIFDHCRCLNVRKAYNMYMEMVHYGFVPHMFSAL 185
L+ A + + M E N KP+ YN++I +C ++ KA+ EM G VP +S
Sbjct: 522 LIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYR 581
Query: 186 ALIKALHYCGRQNEMSWVIQNTLR-SCNLNEFELPKVLN--------EIDFPKCQINALL 236
LI L G+ +E + + +C LNE +L+ E CQ
Sbjct: 582 PLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQEMVQR 641
Query: 237 DVLAEIAMDGLLLDG 251
V ++ G+L+DG
Sbjct: 642 GVDLDLVCYGVLIDG 656
>AT1G63230.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:23451144-23452201 FORWARD
LENGTH=323
Length = 323
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 72/172 (41%), Gaps = 21/172 (12%)
Query: 26 TYSSLMNEYFAQGNLEKAYALEFDMDHDRYMLPCVTMSVFLNGLNKKARPSEAKWILLGK 85
TYS +++ + G A L DM + VT S +N L K+ + SEA+ I
Sbjct: 113 TYSGMIDSFCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEIY--- 169
Query: 86 IFDWCSR--FPTYIIYDTLIENCSNDEFKSVVGLVKGFSKRGLVSKAARAHDTMLEGNYK 143
D R FPT I Y+++I+ GF K+ ++ A R D+M +
Sbjct: 170 -GDMLRRGIFPTTITYNSMID---------------GFCKQDRLNDAKRMLDSMASKSCS 213
Query: 144 PDGAVYNLLIFDHCRCLNVRKAYNMYMEMVHYGFVPHMFSALALIKALHYCG 195
PD ++ LI +C+ V ++ EM G V + + LI G
Sbjct: 214 PDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVG 265
>AT3G53700.1 | Symbols: MEE40 | Pentatricopeptide repeat (PPR)
superfamily protein | chr3:19900303-19902567 FORWARD
LENGTH=754
Length = 754
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 83/204 (40%), Gaps = 22/204 (10%)
Query: 23 DEDTYSSLMNEYFAQGNLEKAYALEFDMDHDRYMLPCVTMSVFLNGLNKKARPSEAKWIL 82
DE TY+ L++ ++G L++A + M+ +T + ++G K + EA+ I
Sbjct: 434 DEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIF 493
Query: 83 LGKIFDWCSRFPTYIIYDTLIENCSNDEFKSVVGLVKGFSKRGLVSKAARAHDTMLEGNY 142
SR + Y+TLI+ G K V AA+ D M+
Sbjct: 494 DEMEVHGVSR--NSVTYNTLID---------------GLCKSRRVEDAAQLMDQMIMEGQ 536
Query: 143 KPDGAVYNLLIFDHCRCLNVRKAYNMYMEMVHYGFVPHMFSALALIKALHYCGRQNEMSW 202
KPD YN L+ CR +++KA ++ M G P + + LI L GR
Sbjct: 537 KPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVE---- 592
Query: 203 VIQNTLRSCNLNEFEL-PKVLNEI 225
V LRS + L P N +
Sbjct: 593 VASKLLRSIQMKGINLTPHAYNPV 616
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 74/171 (43%), Gaps = 16/171 (9%)
Query: 21 LSDEDTYSSLMNEYFAQGNLEKAYALEFDMDHDRYMLPCVTMSVFLNGLNKKARPSEAKW 80
+ DE T++++M Y +G+L+ A + M V+++V ++G K+ R +A
Sbjct: 221 VPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDA-L 279
Query: 81 ILLGKIFDWCSRFPTYIIYDTLIENCSNDEFKSVVGLVKGFSKRGLVSKAARAHDTMLEG 140
+ ++ + FP ++TL V G K G V A D ML+
Sbjct: 280 NFIQEMSNQDGFFPDQYTFNTL---------------VNGLCKAGHVKHAIEIMDVMLQE 324
Query: 141 NYKPDGAVYNLLIFDHCRCLNVRKAYNMYMEMVHYGFVPHMFSALALIKAL 191
Y PD YN +I C+ V++A + +M+ P+ + LI L
Sbjct: 325 GYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTL 375
>AT1G09680.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:3134107-3135930 REVERSE
LENGTH=607
Length = 607
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 89/224 (39%), Gaps = 29/224 (12%)
Query: 9 LDEDTNESLMEPLSDEDTYSSLMNEYFAQGNLEKAYALEFDMDHDRYMLPCVTMSVFLNG 68
DE T SL + ++++L+N Y GNL++ + L+ M+ R T S +N
Sbjct: 263 FDEITKRSLQPTVV---SFNTLINGYCKVGNLDEGFRLKHQMEKSRTRPDVFTYSALINA 319
Query: 69 LNKKARPSEAKWILLGKIFDWCSR--FPTYIIYDTLIENCSN--------DEFKSVVG-- 116
L K+ + A G + C R P +I+ TLI S + ++ ++
Sbjct: 320 LCKENKMDGAH----GLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQKMLSKG 375
Query: 117 ----------LVKGFSKRGLVSKAARAHDTMLEGNYKPDGAVYNLLIFDHCRCLNVRKAY 166
LV GF K G + A D M+ +PD Y LI CR +V A
Sbjct: 376 LQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGGDVETAL 435
Query: 167 NMYMEMVHYGFVPHMFSALALIKALHYCGRQNEMSWVIQNTLRS 210
+ EM G AL+ + GR + ++ LR+
Sbjct: 436 EIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRA 479
>AT1G63130.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:23412854-23414746 FORWARD
LENGTH=630
Length = 630
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 84/197 (42%), Gaps = 20/197 (10%)
Query: 19 EPLSDEDTYSSLMNEYFAQGNLEKAYALEFDMDHDRYMLPCVTMSVFLNGLNKKARPSEA 78
EP D T +SL+N + + A +L M Y T + ++GL + R SEA
Sbjct: 148 EP--DIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEA 205
Query: 79 KWILLGKIFDWCSRFPTYIIYDTLIENCSNDEFKSVVGLVKGFSKRGLVSKAARAHDTML 138
++ + C P + Y + V G KRG + A M
Sbjct: 206 VALVDRMVVKGCQ--PDLVTYGIV---------------VNGLCKRGDIDLALSLLKKME 248
Query: 139 EGNYKPDGAVYNLLIFDHCRCLNVRKAYNMYMEMVHYGFVPHMFSALALIKALHYCGRQN 198
+G +P +YN +I C NV A N++ EM + G P++ + +LI+ L GR +
Sbjct: 249 QGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWS 308
Query: 199 EMSWVIQNTL-RSCNLN 214
+ S ++ + + R N N
Sbjct: 309 DASRLLSDMIERKINPN 325
>AT1G62680.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:23208247-23209893 REVERSE
LENGTH=548
Length = 548
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 50/97 (51%)
Query: 113 SVVGLVKGFSKRGLVSKAARAHDTMLEGNYKPDGAVYNLLIFDHCRCLNVRKAYNMYMEM 172
++ LV GF +R VS A D M+E YKPD YN +I C+ V A++ + E+
Sbjct: 157 TIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEI 216
Query: 173 VHYGFVPHMFSALALIKALHYCGRQNEMSWVIQNTLR 209
G P++ + AL+ L R ++ + ++ + ++
Sbjct: 217 ERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIK 253
>AT1G63630.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:23587298-23588220 FORWARD
LENGTH=257
Length = 257
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 70/170 (41%), Gaps = 17/170 (10%)
Query: 26 TYSSLMNEYFAQGNLEKAYALEFDMDHDRYMLPCVTMSVFLNGLNKKARPSEAKWILLGK 85
TY+ +++ + G A L M + VT S +N K+ + SEA+ I +
Sbjct: 47 TYNCMIDSFCHSGRWSDADQLLRHMIEKQINPDIVTFSALINAFVKERKVSEAEEIY-KE 105
Query: 86 IFDWCSRFPTYIIYDTLIENCSNDEFKSVVGLVKGFSKRGLVSKAARAHDTMLEGNYKPD 145
+ W S FPT I Y+++I+ GF K+ V A R D+M PD
Sbjct: 106 MLRW-SIFPTTITYNSMID---------------GFCKQDRVDDAKRMLDSMASKGCSPD 149
Query: 146 GAVYNLLIFDHCRCLNVRKAYNMYMEMVHYGFVPHMFSALALIKALHYCG 195
++ LI +C+ V ++ EM G V + + LI G
Sbjct: 150 VVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVG 199
>AT3G16890.1 | Symbols: PPR40 | pentatricopeptide (PPR) domain
protein 40 | chr3:5768401-5770380 REVERSE LENGTH=659
Length = 659
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/204 (21%), Positives = 87/204 (42%), Gaps = 17/204 (8%)
Query: 26 TYSSLMNEYFAQGNLEKAYALEFDMDHDRYMLPCVTMSVFLNGLNKKARPSEAKWILLGK 85
T+++ ++ Y +G+++K + + + + +T S+ +N L + +A + +
Sbjct: 462 TFNTFLSGYSVRGDVKKVHGVLEKLLVHGFKPDVITFSLIINCLCRAKEIKDA-FDCFKE 520
Query: 86 IFDWCSRFPTYIIYDTLIENCSNDEFKSVVGLVKGFSKRGLVSKAARAHDTMLEGNYKPD 145
+ +W P I Y+ LI +C + G ++ + M E PD
Sbjct: 521 MLEWGIE-PNEITYNILIRSCCST---------------GDTDRSVKLFAKMKENGLSPD 564
Query: 146 GAVYNLLIFDHCRCLNVRKAYNMYMEMVHYGFVPHMFSALALIKALHYCGRQNEMSWVIQ 205
YN I C+ V+KA + M+ G P F+ LIKAL GR++E +
Sbjct: 565 LYAYNATIQSFCKMRKVKKAEELLKTMLRIGLKPDNFTYSTLIKALSESGRESEAREMFS 624
Query: 206 NTLRSCNLNEFELPKVLNEIDFPK 229
+ R + + +++ E+D K
Sbjct: 625 SIERHGCVPDSYTKRLVEELDLRK 648
>AT5G01110.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:42114-44303 REVERSE
LENGTH=729
Length = 729
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 75/189 (39%), Gaps = 22/189 (11%)
Query: 3 EKSIGPLDEDTNESLMEPL-SDEDTYSSLMNEYFAQGNLEKAYALEFDMDHDRYMLPCVT 61
K +G D+ NE L D T + L++ + GNL+ A L M R L VT
Sbjct: 458 RKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVT 517
Query: 62 MSVFLNGLNKKARPSEAKWILLGKIFDWCSR--FPTYIIYDTLIENCSNDEFKSVVGLVK 119
+ L+G K AK I D S+ PT I Y L V
Sbjct: 518 YNTLLDGFGKVGDIDTAKEIWA----DMVSKEILPTPISYSIL---------------VN 558
Query: 120 GFSKRGLVSKAARAHDTMLEGNYKPDGAVYNLLIFDHCRCLNVRKAYNMYMEMVHYGFVP 179
+G +++A R D M+ N KP + N +I +CR N + +M+ GFVP
Sbjct: 559 ALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVP 618
Query: 180 HMFSALALI 188
S LI
Sbjct: 619 DCISYNTLI 627
>AT1G63080.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:23388884-23390728 REVERSE
LENGTH=614
Length = 614
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 83/190 (43%), Gaps = 18/190 (9%)
Query: 26 TYSSLMNEYFAQGNLEKAYALEFDMDHDRYMLPCVTMSVFLNGLNKKARPSEAKWILLGK 85
T +SL+N + + +A AL M Y VT + ++GL + + SEA ++
Sbjct: 137 TLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERM 196
Query: 86 IFDWCSRFPTYIIYDTLIENCSNDEFKSVVGLVKGFSKRGLVSKAARAHDTMLEGNYKPD 145
+ C P + Y +I G KRG A + M +G + D
Sbjct: 197 VVKGCQ--PDLVTYGAVIN---------------GLCKRGEPDLALNLLNKMEKGKIEAD 239
Query: 146 GAVYNLLIFDHCRCLNVRKAYNMYMEMVHYGFVPHMFSALALIKALHYCGRQNEMSWVIQ 205
+Y+ +I C+ +V A N++ EM + G P +F+ +LI L GR ++ S ++
Sbjct: 240 VVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLS 299
Query: 206 NTL-RSCNLN 214
+ L R N N
Sbjct: 300 DMLERKINPN 309
>AT1G62910.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:23299060-23300958 FORWARD
LENGTH=632
Length = 632
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 84/197 (42%), Gaps = 20/197 (10%)
Query: 19 EPLSDEDTYSSLMNEYFAQGNLEKAYALEFDMDHDRYMLPCVTMSVFLNGLNKKARPSEA 78
EP D T SSL+N Y + A AL M Y T + ++GL + SEA
Sbjct: 150 EP--DIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEA 207
Query: 79 KWILLGKIFDWCSRFPTYIIYDTLIENCSNDEFKSVVGLVKGFSKRGLVSKAARAHDTML 138
++ + C P + Y T+ V G KRG + A M
Sbjct: 208 VALVDQMVQRGCQ--PDLVTYGTV---------------VNGLCKRGDIDLALSLLKKME 250
Query: 139 EGNYKPDGAVYNLLIFDHCRCLNVRKAYNMYMEMVHYGFVPHMFSALALIKALHYCGRQN 198
+G + D +YN +I C+ ++ A N++ EM + G P +F+ +LI L GR +
Sbjct: 251 KGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWS 310
Query: 199 EMSWVIQNTL-RSCNLN 214
+ S ++ + + R N N
Sbjct: 311 DASRLLSDMIERKINPN 327
>AT1G13800.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:4731056-4733707 REVERSE
LENGTH=883
Length = 883
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 78/196 (39%), Gaps = 15/196 (7%)
Query: 9 LDEDTNESLMEPLSDEDTYSSLMNEYFAQGNLEKAYALEFDMDHDRYMLPCVTMSVFLNG 68
LD + + D Y+ ++N Y +L+K YAL DM + VT +V L
Sbjct: 683 LDMKREMEAFDVIPDVVYYTIMINRYCHLNDLKKVYALFKDMKRREIVPDVVTYTVLLKN 742
Query: 69 LNKKARPSEAKWILLGK-------IFDWCSRF----PTYIIYDTLIENCSNDEFKSVVGL 117
++ E K + + DW + I+D +IE+ + + L
Sbjct: 743 KPERNLSREMKAFDVKPDVFYYTVLIDWQCKIGDLGEAKRIFDQMIESGVDPDAAPYTAL 802
Query: 118 VKGFSKRGLVSKAARAHDTMLEGNYKPDGAVYNLLIFDHCRCLNVRKAYNMYMEMVHYGF 177
+ K G + +A D M+E KPD Y LI CR V KA + EM+ G
Sbjct: 803 IACCCKMGYLKEAKMIFDRMIESGVKPDVVPYTALIAGCCRNGFVLKAVKLVKEMLEKGI 862
Query: 178 VPHMFSALALIKALHY 193
P S + A+HY
Sbjct: 863 KPTKAS----LSAVHY 874
>AT1G62930.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:23306534-23308423 FORWARD
LENGTH=629
Length = 629
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 84/197 (42%), Gaps = 20/197 (10%)
Query: 19 EPLSDEDTYSSLMNEYFAQGNLEKAYALEFDMDHDRYMLPCVTMSVFLNGLNKKARPSEA 78
EP D T SSL+N Y + +A AL M Y VT + ++GL + SEA
Sbjct: 147 EP--DIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEA 204
Query: 79 KWILLGKIFDWCSRFPTYIIYDTLIENCSNDEFKSVVGLVKGFSKRGLVSKAARAHDTML 138
++ + C P Y T +V G KRG + A M
Sbjct: 205 VALIDRMVARGCQ--PDLFTYGT---------------VVNGLCKRGDIDLALSLLKKME 247
Query: 139 EGNYKPDGAVYNLLIFDHCRCLNVRKAYNMYMEMVHYGFVPHMFSALALIKALHYCGRQN 198
+G + D +Y +I C NV A N++ EM + G P++ + +LI+ L GR +
Sbjct: 248 KGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWS 307
Query: 199 EMSWVIQNTL-RSCNLN 214
+ S ++ + + R N N
Sbjct: 308 DASRLLSDMIERKINPN 324
>AT1G03560.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr1:890428-892410 REVERSE
LENGTH=660
Length = 660
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 74/178 (41%), Gaps = 17/178 (9%)
Query: 22 SDEDTYSSLMNEYFAQGNLEKAYALEFDMDHDRYMLPCVTMSVFLNGLNKKARPSEAKWI 81
+D+ TY +++ +A + AL +MD +P S+ + GL K+ + +E
Sbjct: 290 ADKITYMTMIQACYADSDFGSCVALYQEMDEKGIQVPPHAFSLVIGGLCKEGKLNEG--- 346
Query: 82 LLGKIFDWCSRFPTYIIYDTLIENCSNDEFKSVVGLVKGFSKRGLVSKAARAHDTMLEGN 141
Y +++ +I S L+ G++K G V A R M++
Sbjct: 347 --------------YTVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEG 392
Query: 142 YKPDGAVYNLLIFDHCRCLNVRKAYNMYMEMVHYGFVPHMFSALALIKALHYCGRQNE 199
+KPD Y++++ C+ V +A + + G + +LI L GR +E
Sbjct: 393 FKPDVVTYSVVVNGLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDE 450
>AT1G62670.1 | Symbols: RPF2 | rna processing factor 2 |
chr1:23204773-23206665 REVERSE LENGTH=630
Length = 630
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 85/199 (42%), Gaps = 18/199 (9%)
Query: 26 TYSSLMNEYFAQGNLEKAYALEFDMDHDRYMLPCVTMSVFLNGLNKKARPSEAKWILLGK 85
T SSL+N Y + +A AL M Y VT + ++GL + SEA ++
Sbjct: 153 TLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRM 212
Query: 86 IFDWCSRFPTYIIYDTLIENCSNDEFKSVVGLVKGFSKRGLVSKAARAHDTMLEGNYKPD 145
+ C P + Y + V G KRG A + M +G +P
Sbjct: 213 VAKGCQ--PDLVTYGVV---------------VNGLCKRGDTDLAFNLLNKMEQGKLEPG 255
Query: 146 GAVYNLLIFDHCRCLNVRKAYNMYMEMVHYGFVPHMFSALALIKALHYCGRQNEMSWVIQ 205
+YN +I C+ ++ A N++ EM G P++ + +LI L GR ++ S ++
Sbjct: 256 VLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLS 315
Query: 206 NTL-RSCNLNEFELPKVLN 223
+ + R N + F +++
Sbjct: 316 DMIERKINPDVFTFSALID 334
>AT1G74900.1 | Symbols: OTP43 | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:28133933-28135381 FORWARD
LENGTH=453
Length = 453
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 82/196 (41%), Gaps = 25/196 (12%)
Query: 21 LSDEDTYSSLMNEYFAQGNLEKAYALEFDMDHDRYMLPCVTMSVFLNGLNKKARPSEAKW 80
D +++++++ +EKAY L F R+ + VT +V LNG R +A
Sbjct: 158 FQDLASFNTILDVLCKSKRVEKAYEL-FRALRGRFSVDTVTYNVILNGWCLIKRTPKALE 216
Query: 81 ILLGKIFDWCSRFPTYIIYDTLIE---------------------NCSNDEFKSVVGLVK 119
+L + + P Y+T+++ +C D + +V
Sbjct: 217 VLKEMVERGIN--PNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEID-VVTYTTVVH 273
Query: 120 GFSKRGLVSKAARAHDTMLEGNYKPDGAVYNLLIFDHCRCLNVRKAYNMYMEMVHYGFVP 179
GF G + +A D M+ P A YN +I C+ NV A M+ EMV G+ P
Sbjct: 274 GFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEP 333
Query: 180 HMFSALALIKALHYCG 195
++ + LI+ L + G
Sbjct: 334 NVTTYNVLIRGLFHAG 349
>AT1G20300.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:7029701-7031314 FORWARD
LENGTH=537
Length = 537
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 102/232 (43%), Gaps = 45/232 (19%)
Query: 25 DTYSSLMNEYFAQGNLEKAYALEFDMDHDRYMLP-CVTMSVFLNGLNKKARPSEAKWILL 83
+T++ L+ Y G +A F+ D +P + S+ ++ L++K R SEA+
Sbjct: 187 ETFTILIRRYVRAGLASEAVHC-FNRMEDYGCVPDKIAFSIVISNLSRKRRASEAQ---- 241
Query: 84 GKIFDWCS-RF-PTYIIYDTLIENCSNDEFKSVVGLVKGFSKRGLVSKAARAHDTMLEGN 141
FD RF P I+Y LV+G+ + G +S+A + M
Sbjct: 242 -SFFDSLKDRFEPDVIVY---------------TNLVRGWCRAGEISEAEKVFKEMKLAG 285
Query: 142 YKPDGAVYNLLIFDHCRCLNVRKAYNMYMEMVHYGFVPHMFSALALIKALHYCGRQ---- 197
+P+ Y+++I CRC + +A++++ +M+ G P+ + L++ GR
Sbjct: 286 IEPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRTEKVL 345
Query: 198 ---NEM------------SWVIQNTLRSCNLNEFELPKVLNEIDFPKCQINA 234
N+M +++I+ R NL KVLN + KC++NA
Sbjct: 346 QVYNQMKKLGCEPDTITYNFLIEAHCRDENLE--NAVKVLNTMIKKKCEVNA 395
>AT1G64583.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:23987202-23988740 REVERSE
LENGTH=512
Length = 512
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 73/172 (42%), Gaps = 23/172 (13%)
Query: 23 DEDTYSSLMNEYFAQGNLEKAYALEFDMDHDRYMLPCVTMSVFLNGLNKKARPSEAKWIL 82
D T+++L++ + QGNL++A L +M VT + +NGL R +AK
Sbjct: 245 DVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAK--- 301
Query: 83 LGKIFDWCSR---FPTYIIYDTLIENCSNDEFKSVVGLVKGFSKRGLVSKAARAHDTMLE 139
K FD + FP + Y+TLI GF K +V + + M
Sbjct: 302 --KTFDLMASKGCFPNVVTYNTLIS---------------GFCKFRMVDEGMKLFQRMSC 344
Query: 140 GNYKPDGAVYNLLIFDHCRCLNVRKAYNMYMEMVHYGFVPHMFSALALIKAL 191
+ D YN LI +C+ +R A +++ MV P + + L+ L
Sbjct: 345 EGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILLHGL 396
>AT1G05670.2 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr1:1698574-1700799 REVERSE
LENGTH=741
Length = 741
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 73/175 (41%), Gaps = 27/175 (15%)
Query: 22 SDEDTYSSLMNEYFAQGNLEKAYALEFDMDHDRYMLPCVTMSVFLNGLNKKARPSEAK-- 79
+D TY++LM+ Y G ++KA + +M VT +V +NG + +
Sbjct: 524 ADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKL 583
Query: 80 --WILLGKIFDWCSRFPTYIIYDTLIEN-CSNDEFKSVVGLVKGFSKRGLVSKAARAHDT 136
W+L I P +++L++ C + K+ + K RG+
Sbjct: 584 LNWMLAKGIA------PNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGV---------- 627
Query: 137 MLEGNYKPDGAVYNLLIFDHCRCLNVRKAYNMYMEMVHYGFVPHMFSALALIKAL 191
PDG Y L+ HC+ N+++A+ ++ EM GF + + LIK
Sbjct: 628 ------GPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGF 676
>AT1G05670.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr1:1698574-1700799 REVERSE
LENGTH=741
Length = 741
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 73/175 (41%), Gaps = 27/175 (15%)
Query: 22 SDEDTYSSLMNEYFAQGNLEKAYALEFDMDHDRYMLPCVTMSVFLNGLNKKARPSEAK-- 79
+D TY++LM+ Y G ++KA + +M VT +V +NG + +
Sbjct: 524 ADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKL 583
Query: 80 --WILLGKIFDWCSRFPTYIIYDTLIEN-CSNDEFKSVVGLVKGFSKRGLVSKAARAHDT 136
W+L I P +++L++ C + K+ + K RG+
Sbjct: 584 LNWMLAKGIA------PNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGV---------- 627
Query: 137 MLEGNYKPDGAVYNLLIFDHCRCLNVRKAYNMYMEMVHYGFVPHMFSALALIKAL 191
PDG Y L+ HC+ N+++A+ ++ EM GF + + LIK
Sbjct: 628 ------GPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGF 676
>AT5G61990.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:24900186-24903110 REVERSE
LENGTH=974
Length = 974
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 73/184 (39%), Gaps = 20/184 (10%)
Query: 21 LSDEDTYSSLMNEYFAQGNLEKAYALEFDMDHDRYMLPCVTMSVFLNGLNKKARPSEAKW 80
L D TY+ LMN F ++ A + +M + V +NG +K +A
Sbjct: 589 LGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASS 648
Query: 81 ILLGKIFDWCSRFPTYIIYDTLIENCSNDEFKSVVGLVKGFSKRGLVSKAARAHDTMLEG 140
I + + + P IIY+ L+ GF + G + KA D M
Sbjct: 649 IFDEMVEEGLT--PNVIIYNMLL---------------GGFCRSGEIEKAKELLDEMSVK 691
Query: 141 NYKPDGAVYNLLIFDHCRCLNVRKAYNMYMEMVHYGFVPHMFSALALIKALHYCGRQNEM 200
P+ Y +I +C+ ++ +A+ ++ EM G VP F L+ C R N++
Sbjct: 692 GLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDG---CCRLNDV 748
Query: 201 SWVI 204
I
Sbjct: 749 ERAI 752
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 72/167 (43%), Gaps = 19/167 (11%)
Query: 28 SSLMNEYFAQGNLEKAYALEFDMDHDRYMLPCVTMSVFLNGLNKKARPSEAKWILLGKIF 87
+ L+NEY +G + +A + M + T +V +NGL K + +A+ I
Sbjct: 561 TGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIF----- 615
Query: 88 DWCSRFPTYIIYDTLIENCSNDEFKSVVGLVKGFSKRGLVSKAARAHDTMLEGNYKPDGA 147
+ + + D F V L+ GFSK G + KA+ D M+E P+
Sbjct: 616 -----------REMRGKGIAPDVFSYGV-LINGFSKLGNMQKASSIFDEMVEEGLTPNVI 663
Query: 148 VYNLLIFDHCRCLNVRKAYNMYMEMVHYGFVPHMFSALALIKALHYC 194
+YN+L+ CR + KA + EM G P+ + +I YC
Sbjct: 664 IYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDG--YC 708
>AT4G20090.1 | Symbols: EMB1025 | Pentatricopeptide repeat (PPR)
superfamily protein | chr4:10868400-10870382 REVERSE
LENGTH=660
Length = 660
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 72/172 (41%), Gaps = 24/172 (13%)
Query: 23 DEDTYSSLMNEYFAQGNLEKAYALEFDMDHDRYMLPCVTMSVFLNGLNKKARPSEAKWIL 82
++ YS L++ F +G E+A +L M V SV ++GL ++ +P+EAK IL
Sbjct: 361 NQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEIL 420
Query: 83 LGKIFDWCSRFPTYIIYDTLIEN---------------------CSNDEFKSVVGLVKGF 121
I C P Y +L++ CS ++F V L+ G
Sbjct: 421 NRMIASGC--LPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSV-LIDGL 477
Query: 122 SKRGLVSKAARAHDTMLEGNYKPDGAVYNLLIFDHCRCLNVRKAYNMYMEMV 173
G V +A ML KPD Y+ +I C ++ A +Y EM+
Sbjct: 478 CGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEML 529
>AT1G63070.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:23385324-23387167 REVERSE LENGTH=590
Length = 590
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 82/189 (43%), Gaps = 18/189 (9%)
Query: 26 TYSSLMNEYFAQGNLEKAYALEFDMDHDRYMLPCVTMSVFLNGLNKKARPSEAKWILLGK 85
T +SL+N + + +A AL M Y VT + ++GL + + SEA ++
Sbjct: 147 TLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERM 206
Query: 86 IFDWCSRFPTYIIYDTLIENCSNDEFKSVVGLVKGFSKRGLVSKAARAHDTMLEGNYKPD 145
+ C P + Y +I G KRG A + M +G + D
Sbjct: 207 VVKGCQ--PDLVTYGAVIN---------------GLCKRGEPDLALNLLNKMEKGKIEAD 249
Query: 146 GAVYNLLIFDHCRCLNVRKAYNMYMEMVHYGFVPHMFSALALIKALHYCGRQNEMSWVIQ 205
+YN +I C+ ++ A++++ +M G P +F+ LI L GR ++ S ++
Sbjct: 250 VVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLS 309
Query: 206 NTLRSCNLN 214
+ L N+N
Sbjct: 310 DMLEK-NIN 317
>AT5G16420.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr5:5368034-5369641 FORWARD
LENGTH=535
Length = 535
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 78/171 (45%), Gaps = 26/171 (15%)
Query: 62 MSVFLNGLNKKARPSEAKWILLGKIFDWCSR--FPTYIIYDTLIENCSNDEFKSVVGLVK 119
+S ++ L K+ R +EA+ K+FD + P+ + Y+TLI
Sbjct: 369 LSTLIHWLCKEGRVTEAR-----KLFDEFEKGSIPSLLTYNTLI---------------A 408
Query: 120 GFSKRGLVSKAARAHDTMLEGNYKPDGAVYNLLIFDHCRCLNVRKAYNMYMEMVHYGFVP 179
G ++G +++A R D M E KP+ YN+LI + NV++ + EM+ G P
Sbjct: 409 GMCEKGELTEAGRLWDDMYERKCKPNAFTYNVLIEGLSKNGNVKEGVRVLEEMLEIGCFP 468
Query: 180 HMFSALALIKALHYCGRQNEMSWVIQNTLRSCNLN----EFELPKVLNEID 226
+ + L L + L G++ + ++ + + ++ E L K E+D
Sbjct: 469 NKTTFLILFEGLQKLGKEEDAMKIVSMAVMNGKVDKESWELFLKKFAGELD 519
>AT1G63150.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:23419399-23421288 FORWARD
LENGTH=629
Length = 629
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 79/190 (41%), Gaps = 19/190 (10%)
Query: 19 EPLSDEDTYSSLMNEYFAQGNLEKAYALEFDMDHDRYMLPCVTMSVFLNGLNKKARPSEA 78
EP D T SSL+N Y + A AL M Y T + ++GL + SEA
Sbjct: 150 EP--DIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEA 207
Query: 79 KWILLGKIFDWCSRFPTYIIYDTLIENCSNDEFKSVVGLVKGFSKRGLVSKAARAHDTML 138
++ + C P + Y T+ V G KRG + A + M
Sbjct: 208 VALVDQMVQRGCQ--PDLVTYGTV---------------VNGLCKRGDIDLALNLLNKME 250
Query: 139 EGNYKPDGAVYNLLIFDHCRCLNVRKAYNMYMEMVHYGFVPHMFSALALIKALHYCGRQN 198
K + ++N +I C+ +V A +++ EM G P++ + +LI L GR +
Sbjct: 251 AARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWS 310
Query: 199 EMSWVIQNTL 208
+ S ++ N L
Sbjct: 311 DASRLLSNML 320
>AT1G77340.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:29068620-29069828 REVERSE
LENGTH=402
Length = 402
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 71/178 (39%), Gaps = 23/178 (12%)
Query: 23 DEDTYSSLMNEYFAQGNLEKAYALEFDMDHDRYMLPCVTMSVFLNGLNKKARPSEAKWIL 82
+E +Y+ L+ F +++A +L M D T +V ++ L + SEA +
Sbjct: 224 NEVSYTQLIYGLFEAKKIDEALSLLVKMKDDNCCPNVRTYTVLIDALCGSGQKSEA--MN 281
Query: 83 LGKIFDWCSRFPTYIIYDTLIEN-CSNDEFKSVVGL-------------------VKGFS 122
L K P +Y LI++ CS D GL +KGF
Sbjct: 282 LFKQMSESGIKPDDCMYTVLIQSFCSGDTLDEASGLLEHMLENGLMPNVITYNALIKGFC 341
Query: 123 KRGLVSKAARAHDTMLEGNYKPDGAVYNLLIFDHCRCLNVRKAYNMYMEMVHYGFVPH 180
K+ V KA MLE N PD YN LI C N+ AY + M G VP+
Sbjct: 342 KKN-VHKAMGLLSKMLEQNLVPDLITYNTLIAGQCSSGNLDSAYRLLSLMEESGLVPN 398
>AT1G62590.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:23177294-23179198 REVERSE LENGTH=634
Length = 634
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 69/170 (40%), Gaps = 17/170 (10%)
Query: 26 TYSSLMNEYFAQGNLEKAYALEFDMDHDRYMLPCVTMSVFLNGLNKKARPSEAKWILLGK 85
TYSSL++ + G A L DM + VT + ++ K+ + EA+ +
Sbjct: 297 TYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKL---- 352
Query: 86 IFDWCSRFPTYIIYDTLIENCSNDEFKSVVGLVKGFSKRGLVSKAARAHDTMLEGNYKPD 145
YD +I+ + + + LV GF + KA + + M+ + PD
Sbjct: 353 -------------YDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPD 399
Query: 146 GAVYNLLIFDHCRCLNVRKAYNMYMEMVHYGFVPHMFSALALIKALHYCG 195
YN LI C+ V ++ EM H G V + LI+ L + G
Sbjct: 400 VVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDG 449
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 75/183 (40%), Gaps = 17/183 (9%)
Query: 26 TYSSLMNEYFAQGNLEKAYALEFDMDHDRYMLPCVTMSVFLNGLNKKARPSEAKWILLGK 85
T SSL+N Y + A AL M Y +T + ++GL + SEA ++
Sbjct: 157 TLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRM 216
Query: 86 IFDWCSRFPTYIIYDTLIENCSNDEFKSVVGLVKGFSKRGLVSKAARAHDTMLEGNYKPD 145
+ C P + Y + V G KRG A + M + D
Sbjct: 217 VQRGCQ--PNLVTYGVV---------------VNGLCKRGDTDLALNLLNKMEAAKIEAD 259
Query: 146 GAVYNLLIFDHCRCLNVRKAYNMYMEMVHYGFVPHMFSALALIKALHYCGRQNEMSWVIQ 205
++N +I C+ +V A N++ EM G P++ + +LI L GR ++ S ++
Sbjct: 260 VVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLS 319
Query: 206 NTL 208
+ +
Sbjct: 320 DMI 322
>AT2G06000.2 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr2:2328000-2329610 REVERSE
LENGTH=536
Length = 536
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 81/178 (45%), Gaps = 19/178 (10%)
Query: 23 DEDTYSSLMNEYFAQGNLEKAYALEFDMDHDRYMLP-CVTMSVFLNGLNKKARPSEAKWI 81
D T++SL++ Y G + + + L +M+ R M P T S+ +N L + R +A+
Sbjct: 346 DVVTFTSLIDGYCRVGQVSQGFRLWEEMN-ARGMFPNAFTYSILINALCNENRLLKARE- 403
Query: 82 LLGKIFDWCSRFPTYIIYDTLIENCSNDEFKSVVGLVKGFSKRGLVSKAARAHDTMLEGN 141
LLG++ P +Y+ +I+ GF K G V++A + M +
Sbjct: 404 LLGQLASK-DIIPQPFMYNPVID---------------GFCKAGKVNEANVIVEEMEKKK 447
Query: 142 YKPDGAVYNLLIFDHCRCLNVRKAYNMYMEMVHYGFVPHMFSALALIKALHYCGRQNE 199
KPD + +LI HC + +A +++ +MV G P + +L+ L G E
Sbjct: 448 CKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSPDKITVSSLLSCLLKAGMAKE 505
>AT2G06000.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr2:2328000-2329610 REVERSE
LENGTH=536
Length = 536
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 81/178 (45%), Gaps = 19/178 (10%)
Query: 23 DEDTYSSLMNEYFAQGNLEKAYALEFDMDHDRYMLP-CVTMSVFLNGLNKKARPSEAKWI 81
D T++SL++ Y G + + + L +M+ R M P T S+ +N L + R +A+
Sbjct: 346 DVVTFTSLIDGYCRVGQVSQGFRLWEEMN-ARGMFPNAFTYSILINALCNENRLLKARE- 403
Query: 82 LLGKIFDWCSRFPTYIIYDTLIENCSNDEFKSVVGLVKGFSKRGLVSKAARAHDTMLEGN 141
LLG++ P +Y+ +I+ GF K G V++A + M +
Sbjct: 404 LLGQLASK-DIIPQPFMYNPVID---------------GFCKAGKVNEANVIVEEMEKKK 447
Query: 142 YKPDGAVYNLLIFDHCRCLNVRKAYNMYMEMVHYGFVPHMFSALALIKALHYCGRQNE 199
KPD + +LI HC + +A +++ +MV G P + +L+ L G E
Sbjct: 448 CKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSPDKITVSSLLSCLLKAGMAKE 505
>AT4G01400.3 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 15 growth stages; CONTAINS
InterPro DOMAIN/s: Pentatricopeptide repeat
(InterPro:IPR002885); BEST Arabidopsis thaliana protein
match is: Pentatricopeptide repeat (PPR) superfamily
protein (TAIR:AT5G46100.1); Has 40053 Blast hits to
12380 proteins in 263 species: Archae - 4; Bacteria -
27; Metazoa - 366; Fungi - 374; Plants - 38347; Viruses
- 0; Other Eukaryotes - 935 (source: NCBI BLink). |
chr4:575843-577243 REVERSE LENGTH=466
Length = 466
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 99/247 (40%), Gaps = 24/247 (9%)
Query: 21 LSDEDTYSSLMNEYFAQGNLEKAYALEFDMDHDRYMLPCVTMSVFLNGLNKKARPSEAKW 80
+ D D+Y L+ + +G + A L DM + ++ ++ + LN L +K + EA
Sbjct: 222 VPDVDSYKILIQGFCRKGQVNGAMELLDDMLNKGFVPDRLSYTTLLNSLCRKTQLREAYK 281
Query: 81 ILLGKIFDWCSRFPTYIIYDTLIENCSNDEFKSVVGLVKGFSKRGLVSKAARAHDTMLEG 140
+L C+ P + Y+T+I GF + A + D ML
Sbjct: 282 LLCRMKLKGCN--PDLVHYNTMI---------------LGFCREDRAMDARKVLDDMLSN 324
Query: 141 NYKPDGAVYNLLIFDHCRCLNVRKAYNMYMEMVHYGFVPHMFSALALIKALHYCGRQNEM 200
P+ Y LI C + EM+ GF PH + L+K G+ E
Sbjct: 325 GCSPNSVSYRTLIGGLCDQGMFDEGKKYLEEMISKGFSPHFSVSNCLVKGFCSFGKVEEA 384
Query: 201 SWVIQNTLRS-----CNLNEFELPKVLNEIDFPKCQINALLDVLAEIAMDGLLLDGGK-- 253
V++ +++ + E +P + NE + K ++ V EI D ++D G
Sbjct: 385 CDVVEVVMKNGETLHSDTWEMVIPLICNEDESEKIKLFLEDAVKEEITGDTRIVDVGIGL 444
Query: 254 CSYASAK 260
SY S+K
Sbjct: 445 GSYLSSK 451
>AT1G63330.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:23489840-23491519 FORWARD
LENGTH=559
Length = 559
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 76/183 (41%), Gaps = 17/183 (9%)
Query: 26 TYSSLMNEYFAQGNLEKAYALEFDMDHDRYMLPCVTMSVFLNGLNKKARPSEAKWILLGK 85
T SSL+N Y + A AL M Y +T + ++GL + SEA ++
Sbjct: 82 TLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRM 141
Query: 86 IFDWCSRFPTYIIYDTLIENCSNDEFKSVVGLVKGFSKRGLVSKAARAHDTMLEGNYKPD 145
+ C P + Y + V G KRG + A + M + D
Sbjct: 142 VQRGCQ--PNLVTYGVV---------------VNGLCKRGDIDLAFNLLNKMEAAKIEAD 184
Query: 146 GAVYNLLIFDHCRCLNVRKAYNMYMEMVHYGFVPHMFSALALIKALHYCGRQNEMSWVIQ 205
++N +I C+ +V A N++ EM G P++ + +LI L GR ++ S ++
Sbjct: 185 VVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLS 244
Query: 206 NTL 208
+ +
Sbjct: 245 DMI 247
>AT5G57250.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:23195609-23198524 REVERSE
LENGTH=971
Length = 971
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 86/204 (42%), Gaps = 25/204 (12%)
Query: 6 IGPLDEDTNESLMEPLSDEDT------YSSLMNEYFAQGNLEKAYALEFDMDHDRYMLPC 59
+G +DE + L+ L DE YS+ ++ YF G L A + +M
Sbjct: 220 LGKVDEVRD--LVRRLEDEGFEFDCVFYSNWIHGYFKGGALVDALMQDREMVEKGMNRDV 277
Query: 60 VTMSVFLNGLNKKARPSEAKWILLGKIFDWCSRFPTYIIYDTLIENCSNDEFKSVVGLVK 119
V+ S+ ++GL+K+ EA LLGK+ P I Y +I +
Sbjct: 278 VSYSILIDGLSKEGNVEEALG-LLGKMIKEGVE-PNLITYTAII---------------R 320
Query: 120 GFSKRGLVSKAARAHDTMLEGNYKPDGAVYNLLIFDHCRCLNVRKAYNMYMEMVHYGFVP 179
G K G + +A + +L + D +Y LI CR N+ +A++M +M G P
Sbjct: 321 GLCKMGKLEEAFVLFNRILSVGIEVDEFLYVTLIDGICRKGNLNRAFSMLGDMEQRGIQP 380
Query: 180 HMFSALALIKALHYCGRQNEMSWV 203
+ + +I L GR +E V
Sbjct: 381 SILTYNTVINGLCMAGRVSEADEV 404
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 94/222 (42%), Gaps = 24/222 (10%)
Query: 26 TYSSLMNEYFAQGNLEKAYALEFDMDHDRYMLPC-VTMSVFLNGLNKKARPSEAKWILLG 84
TY+SL+N QG L +A L FD + ++P VT + ++ L K+ +A+ +L
Sbjct: 692 TYNSLINGLCQQGCLVEALRL-FDSLENIGLVPSEVTYGILIDNLCKEGLFLDAEKLLDS 750
Query: 85 KIFDWCSRFPTYIIYDTLIENCSNDEFKSVVGLVKGFSKRGLVSKAARAHDTMLEGNYKP 144
+ P IIY+++++ G+ K G A R + G P
Sbjct: 751 MVSKGL--VPNIIIYNSIVD---------------GYCKLGQTEDAMRVVSRKMMGRVTP 793
Query: 145 DGAVYNLLIFDHCRCLNVRKAYNMYMEMVHYGFVPHMFSALALIKALHYCGRQNEMSWVI 204
D + +I +C+ ++ +A +++ E F L LIK GR E ++
Sbjct: 794 DAFTVSSMIKGYCKKGDMEEALSVFTEFKDKNISADFFGFLFLIKGFCTKGRMEEARGLL 853
Query: 205 QNTLRSCNLNEFELPKVLNEIDFPKCQINALLDVLAEIAMDG 246
+ L S + + K++N +D + ++ L E+ G
Sbjct: 854 REMLVSES-----VVKLINRVDAELAESESIRGFLVELCEQG 890
>AT2G16880.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr2:7312262-7314493 REVERSE
LENGTH=743
Length = 743
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 74/191 (38%), Gaps = 32/191 (16%)
Query: 26 TYSSLMNEYFAQGNLEKAYALEFDMDHDRYMLPCVTMSVFLNGLNKKARPSEAKWIL--- 82
TY +L+ Y G+L A + +M + +T++ L+ L K+ + EA +L
Sbjct: 418 TYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKLDEAHNLLNSA 477
Query: 83 --LGKIFDWCSRFPTYIIYDTLI------ENCSN-----DEFKSVV---------GLVKG 120
G I D + Y TLI E DE K V L+ G
Sbjct: 478 HKRGFIVDE-------VTYGTLIMGFFREEKVEKALEMWDEMKKVKITPTVSTFNSLIGG 530
Query: 121 FSKRGLVSKAARAHDTMLEGNYKPDGAVYNLLIFDHCRCLNVRKAYNMYMEMVHYGFVPH 180
G A D + E PD + +N +I +C+ V KA+ Y E + + F P
Sbjct: 531 LCHHGKTELAMEKFDELAESGLLPDDSTFNSIILGYCKEGRVEKAFEFYNESIKHSFKPD 590
Query: 181 MFSALALIKAL 191
++ L+ L
Sbjct: 591 NYTCNILLNGL 601
>AT3G07290.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr3:2321740-2324382 REVERSE
LENGTH=880
Length = 880
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 85/205 (41%), Gaps = 24/205 (11%)
Query: 26 TYSSLMNEYFAQGNLEKAYALEFDMDHDRYMLPCV-TMSVFLNGLNKKARPSEAKWILLG 84
TY+ L+ +G ++KA+ L FD R P V T +V ++GL + + EA +
Sbjct: 303 TYTVLIKALCDRGLIDKAFNL-FDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRK 361
Query: 85 KIFDWCSRFPTYIIYDTLIENCSND-------EFKSVVG-------------LVKGFSKR 124
+ D FP+ I Y+ LI D E +V+ L++G +
Sbjct: 362 MVKDRI--FPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRV 419
Query: 125 GLVSKAARAHDTMLEGNYKPDGAVYNLLIFDHCRCLNVRKAYNMYMEMVHYGFVPHMFSA 184
G KA ML+ PD YN+LI CR ++ AY + M + P +
Sbjct: 420 GKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTF 479
Query: 185 LALIKALHYCGRQNEMSWVIQNTLR 209
A+I A G+ + S + LR
Sbjct: 480 TAIINAFCKQGKADVASAFLGLMLR 504
>AT1G02060.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:360918-363050 REVERSE
LENGTH=710
Length = 710
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 79/191 (41%), Gaps = 22/191 (11%)
Query: 23 DEDTYSSLMNEYFAQGNLEKAYALEFDMDHDRYMLPCVTMSVFLNGLNKKARPSEAKWIL 82
D T+++L+N + +++A+ + DM+ VT + ++GL + + A +L
Sbjct: 208 DSYTFNTLINGFCKNSMVDEAFRIFKDMELYHCNPDVVTYNTIIDGLCRAGKVKIAHNVL 267
Query: 83 LGKIFDWCSRFPTYIIYDTLIEN-CSNDEFKSVVGLVKGFSKRGLVSKA----------A 131
G + P + Y TL+ C E V + RGL A +
Sbjct: 268 SGMLKKATDVHPNVVSYTTLVRGYCMKQEIDEAVLVFHDMLSRGLKPNAVTYNTLIKGLS 327
Query: 132 RAH------DTMLEGN-----YKPDGAVYNLLIFDHCRCLNVRKAYNMYMEMVHYGFVPH 180
AH D ++ GN + PD +N+LI HC ++ A ++ EM++ P
Sbjct: 328 EAHRYDEIKDILIGGNDAFTTFAPDACTFNILIKAHCDAGHLDAAMKVFQEMLNMKLHPD 387
Query: 181 MFSALALIKAL 191
S LI+ L
Sbjct: 388 SASYSVLIRTL 398
>AT5G08310.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:2672756-2675254 REVERSE
LENGTH=832
Length = 832
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 65/159 (40%), Gaps = 27/159 (16%)
Query: 26 TYSSLMNEYFAQGNLEKAYALEFDMDHDRYMLPCVTMSVFLNGLNKKARPSEAKWILLGK 85
TY+S+++ + +G +++ + M D +T + ++GL RPSEA
Sbjct: 651 TYNSMIDGWCKEGEIDRGLSCIVRMYEDEKNPDVITYTSLIHGLCASGRPSEA------- 703
Query: 86 IFDWCSR-----FPTYIIYDTLIENCSNDEFKSVVGLVKGFSKRGLVSKAARAHDTMLEG 140
IF W +P I + + L++G K G +A M E
Sbjct: 704 IFRWNEMKGKDCYPNRITF---------------MALIQGLCKCGWSGEALVYFREMEEK 748
Query: 141 NYKPDGAVYNLLIFDHCRCLNVRKAYNMYMEMVHYGFVP 179
+PD AVY L+ N+ + ++ EMVH G P
Sbjct: 749 EMEPDSAVYLSLVSSFLSSENINAGFGIFREMVHKGRFP 787
>AT2G01740.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr2:326136-327815 REVERSE
LENGTH=559
Length = 559
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/194 (20%), Positives = 84/194 (43%), Gaps = 22/194 (11%)
Query: 26 TYSSLMNEYFAQGNLEKAYALEFDMDHDRYMLPCVTMSVFLNGLNKKARPSEAKWILLGK 85
T++ L++ Y G+LE A +L +M R L VT + ++G KK A+ +
Sbjct: 200 TFTCLIDGYCKAGDLEVAVSLYKEMRRVRMSLNVVTYTALIDGFCKKGEMQRAEEMYSRM 259
Query: 86 IFDWCSRFPTYIIYDTLIENC-----SNDEFKSVVG---------------LVKGFSKRG 125
+ D P ++Y T+I+ S++ K + ++ G G
Sbjct: 260 VEDRVE--PNSLVYTTIIDGFFQRGDSDNAMKFLAKMLNQGMRLDITAYGVIISGLCGNG 317
Query: 126 LVSKAARAHDTMLEGNYKPDGAVYNLLIFDHCRCLNVRKAYNMYMEMVHYGFVPHMFSAL 185
+ +A + M + + PD ++ ++ + + ++ A NMY +++ GF P + +
Sbjct: 318 KLKEATEIVEDMEKSDLVPDMVIFTTMMNAYFKSGRMKAAVNMYHKLIERGFEPDVVALS 377
Query: 186 ALIKALHYCGRQNE 199
+I + G+ +E
Sbjct: 378 TMIDGIAKNGQLHE 391
>AT5G55840.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:22598038-22601688 FORWARD
LENGTH=1136
Length = 1136
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 69/165 (41%), Gaps = 17/165 (10%)
Query: 26 TYSSLMNEYFAQGNLEKAYALEFDMDHDRYMLPCVTMSVFLNGLNKKARPSEAKWILLGK 85
TY+ +++ G L++A L +M D VT S +NG K R AK I+ +
Sbjct: 445 TYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVC-R 503
Query: 86 IFDWCSRFPTYIIYDTLIENCSNDEFKSVVGLVKGFSKRGLVSKAARAHDTMLEGNYKPD 145
I+ P IIY TLI NC + G + +A R ++ M+ + D
Sbjct: 504 IYR-VGLSPNGIIYSTLIYNCC---------------RMGCLKEAIRIYEAMILEGHTRD 547
Query: 146 GAVYNLLIFDHCRCLNVRKAYNMYMEMVHYGFVPHMFSALALIKA 190
+N+L+ C+ V +A M G +P+ S LI
Sbjct: 548 HFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLING 592
>AT4G31850.1 | Symbols: PGR3 | proton gradient regulation 3 |
chr4:15403020-15406358 FORWARD LENGTH=1112
Length = 1112
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 79/186 (42%), Gaps = 19/186 (10%)
Query: 26 TYSSLMNEYFAQGNLEKAYALEFDMDHDRYMLPCV-TMSVFLNGLNKKARPSEAKWILLG 84
T++ +++ GN++ A L +D+ DR P T ++GL+K R EAK + G
Sbjct: 857 THNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEG 916
Query: 85 KIFDWCSRFPTYIIYDTLIENCSNDEFKSVVGLVKGFSKRGLVSKAARAHDTMLEGNYKP 144
+ D+ R P IY+ LI GF K G A M++ +P
Sbjct: 917 -MLDYGCR-PNCAIYNILIN---------------GFGKAGEADAACALFKRMVKEGVRP 959
Query: 145 DGAVYNLLIFDHCRCLNVRKAYNMYMEMVHYGFVPHMFSALALIKALHYCGRQNEMSWVI 204
D Y++L+ C V + + + E+ G P + +I L R E + V+
Sbjct: 960 DLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEE-ALVL 1018
Query: 205 QNTLRS 210
N +++
Sbjct: 1019 FNEMKT 1024
>AT1G22960.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:8128086-8130242 REVERSE
LENGTH=718
Length = 718
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 66/164 (40%), Gaps = 19/164 (11%)
Query: 12 DTNESLMEPLSDED--TYSSLMNEYFAQGNLEKAYALEFDMDHDRYMLPCVTMSVFLNGL 69
D L+ ++ D +Y++LM+ Y G +A L D+ VT + ++GL
Sbjct: 360 DDARELLSSMAAPDVVSYNTLMHGYIKMGKFVEASLLFDDLRAGDIHPSIVTYNTLIDGL 419
Query: 70 NKKARPSEAKWILLGKIFDWCSRFPTYIIYDTLIENCSNDEFKSVVGLVKGFSKRGLVSK 129
+ A+ L + FP I Y TL VKGF K G +S
Sbjct: 420 CESGNLEGAQR--LKEEMTTQLIFPDVITYTTL---------------VKGFVKNGNLSM 462
Query: 130 AARAHDTMLEGNYKPDGAVYNLLIFDHCRCLNVRKAYNMYMEMV 173
A +D ML KPDG Y R + KA+ ++ EMV
Sbjct: 463 ATEVYDEMLRKGIKPDGYAYTTRAVGELRLGDSDKAFRLHEEMV 506
>AT5G16640.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:5461031-5462545 FORWARD
LENGTH=504
Length = 504
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 70/177 (39%), Gaps = 17/177 (9%)
Query: 23 DEDTYSSLMNEYFAQGNLEKAYALEFDMDHDRYMLPCVTMSVFLNGLNKKARPSEAKWIL 82
D TYS L+N Y +E L +M + VT ++ + G + + + A+ I
Sbjct: 325 DVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIF 384
Query: 83 LGKIFDWCSRFPTYIIYDTLIENCSNDEFKSVVGLVKGFSKRGLVSKAARAHDTMLEGNY 142
+F C P I Y+ L+ G G + KA M +
Sbjct: 385 RRMVF--CGVHPNIITYNVLLH---------------GLCDNGKIEKALVILADMQKNGM 427
Query: 143 KPDGAVYNLLIFDHCRCLNVRKAYNMYMEMVHYGFVPHMFSALALIKALHYCGRQNE 199
D YN++I C+ V A+++Y + G +P +++ ++ L+ G + E
Sbjct: 428 DADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTYTTMMLGLYKKGLRRE 484
>AT1G07740.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:2399117-2400496 REVERSE
LENGTH=459
Length = 459
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 64/155 (41%), Gaps = 17/155 (10%)
Query: 26 TYSSLMNEYFAQGNLEKAYALEFDMDHDRYMLPCVTMSVFLNGLNKKARPSEAKWILLGK 85
TY+SL+ ++ KA +L DM R VT + + GL K +EAK ++
Sbjct: 223 TYNSLIGFLCRNDDMGKAKSLLEDMIKKRIRPNAVTFGLLMKGLCCKGEYNEAKKLMFDM 282
Query: 86 IFDWCSRFPTYIIYDTLIENCSNDEFKSVVGLVKGFSKRGLVSKAARAHDTMLEGNYKPD 145
+ C P + Y L+ + KRG + +A M + KPD
Sbjct: 283 EYRGCK--PGLVNYGILMSD---------------LGKRGRIDEAKLLLGEMKKRRIKPD 325
Query: 146 GAVYNLLIFDHCRCLNVRKAYNMYMEMVHYGFVPH 180
+YN+L+ C V +AY + EM G P+
Sbjct: 326 VVIYNILVNHLCTECRVPEAYRVLTEMQMKGCKPN 360