Miyakogusa Predicted Gene

Lj1g3v4719680.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4719680.1 tr|B9HBX0|B9HBX0_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_561466 PE=4 SV=1,42.47,1e-16,PH
domain-like,NULL; SUBFAMILY NOT NAMED,NULL; TRANSCRIPTION FACTOR SMIF
(DECAPPING ENZYME DCP1),Dcp,CUFF.33043.1
         (356 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G08370.1 | Symbols: DCP1, ATDCP1 | decapping 1 | chr1:2638355...   249   3e-66

>AT1G08370.1 | Symbols: DCP1, ATDCP1 | decapping 1 |
           chr1:2638355-2640367 FORWARD LENGTH=367
          Length = 367

 Score =  249 bits (635), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 165/373 (44%), Positives = 202/373 (54%), Gaps = 35/373 (9%)

Query: 1   MSQ-KKLTPNLDRQSTKVLNLTVLRRMDPFIDEILFTAAHVSLYDFNIESNQWSRKNVEG 59
           MSQ  K+ PNLD+ ST++LNLTVL+R+DP+I+EIL TAAHV+ Y+FNIE +QWSRK+VEG
Sbjct: 1   MSQNGKIIPNLDQNSTRLLNLTVLQRIDPYIEEILITAAHVTFYEFNIELSQWSRKDVEG 60

Query: 60  SLFVVQRNPQVKPEFQFIVMNRRNTDNLKENLL-DFEYELKKPYLLYRNAKQEVNGIWFY 118
           SLFVV+R+ Q  P FQFIVMNRRNTDNL ENLL DFEYE++ PYLLYRNA QEVNGIWFY
Sbjct: 61  SLFVVKRSTQ--PRFQFIVMNRRNTDNLVENLLGDFEYEVQGPYLLYRNASQEVNGIWFY 118

Query: 119 NPDECEEVGNLFNRIIDEYPKAPPSTIMPSSNSEFEELEPVSIIRXXXXXXXXXXXXXNT 178
           N  ECEEV  LFNRI+  Y K        SS SEFEELE    +              + 
Sbjct: 119 NKRECEEVATLFNRILSAYSKVNQKPKASSSKSEFEELEAKPTMAVMDGPLEPSSTARDA 178

Query: 179 PEDYVFINSLNASKVTGNYASSVESFGRPYHSATV-------TSTVPNGLFTPAPSVQIP 231
           P+D  F+N  +++   GN AS   S   PY S+ +                  A   QI 
Sbjct: 179 PDDPAFVNFFSSTMNLGNTASG--SASGPYQSSAIPHQPHQPHQPTIAPPVAAAAPPQIQ 236

Query: 232 XXXXXXXXXXXETI---------NIGNQVTKLVNPSTF-----LAXXXXXXXXXXXXXXX 277
                       T+         +  N  T LV PS F     +A               
Sbjct: 237 SPPPLQSSSPLMTLFDNNPEVISSNSNIHTDLVTPSFFGPPRMMAQPHLIPGVSMPTAPP 296

Query: 278 VPPNAAVHHPLILPNQYGTPVFQHFXXXXXXXXXXXXXXXXXXRPVISRDKVRDALLSLV 337
           + PN A H        YGTPV Q F                   PVISRDKV++ALLSL+
Sbjct: 297 LNPNNASHQ----QRSYGTPVLQPFPPPTPPPSLAPAPTG----PVISRDKVKEALLSLL 348

Query: 338 QDDQFIDMVFQKL 350
           Q+D+FID + + L
Sbjct: 349 QEDEFIDKITRTL 361